mRNA_H-paniculata_contig2404.6508.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2404.6508.1 vs. uniprot
Match: D7FPZ9_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPZ9_ECTSI) HSP 1 Score: 176 bits (446), Expect = 3.890e-45 Identity = 103/233 (44.21%), Postives = 128/233 (54.94%), Query Frame = 1
Query: 2650 GGFAPLPISRILSEEMVRILALRRRDLHAVARDSPDLLHKAVAEACYMVDSAVSNASTHCLALCNMGRLLEGRGHPDEALLCFQEASSVHSSSAEAMCLRAANLRMKGNLEDAVFYFESALARDESHWPAWHGLGQTKAAQGMFTDAVEALSRWLEG---------------------DTTAAGVHKAAGLVQLGDAQKELGQDTHAQISYEQAAATDAGSSDAYFKLGTLLQ 3285
G P PI+R+L EE+ R+LAL RRDL VAR SP+LL AV ++ +M + AV A+ AL NMGRLLE RGHPDEALLCFQEAS+ RDESHW AW GLGQ K AQ + +AVEA S+WL+G + A A GLVQLG+A +LGQD A+ +YE+A + D S+A+F+LGTLLQ
Sbjct: 49 GMLLPAPIARVLHEEVFRVLALNRRDLDIVARVSPELLQSAVVKSFWMFEEAVFTAAARSHALSNMGRLLEDRGHPDEALLCFQEASTADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDESHWSAWCGLGQVKGAQAKYAEAVEAFSKWLQGGGGGEGGAAENGNTGSGAPQAEKVAGARFMAKGLVQLGEAHVKLGQDKQARSAYERAVSADENCSEAHFQLGTLLQ 281
BLAST of mRNA_H-paniculata_contig2404.6508.1 vs. uniprot
Match: A0A7S3HLQ1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLQ1_9STRA) HSP 1 Score: 100 bits (250), Expect = 5.330e-18 Identity = 67/235 (28.51%), Postives = 119/235 (50.64%), Query Frame = 1
Query: 16 EVVRVAGETIGISLYPRLMTILTVTED-LDPQRRSIGWVIRLMDEIYDSRQGVETGDTILKYFIASFAAEEDHFNLDGRMRRHTSFPTFAYNHLKNKHGVKHVVRSVCLDLVCNAHIHRRRHPEVEVFARFLEEFYGEKELYFFLDVRAQVQRMTRVC--CRRQKT------NTQTVWMSHADCVRVARGVFVDTTTLYFRDLIDTIESQASCDHEG-GHSKRISVSDFFYLAMV 690
+V VA E + + YPR ++ D + P++R WV++++++I+D R +E D E++ + D + FP F + G+K +V C DL+ N +++R+ + E+EVF RFL+EFY +L FFL VR+ + ++ + R QK + +W+S+ + VAR VF FRD + I Q + G S+RI ++++ +L++V
Sbjct: 94 DVTVVAPEHLEYNAYPRFTALIANNGDTVRPRQRPFTWVMKIVEDIFDHRFSLEKND---------IEREDESPSFDLML---LIFPVFVVRKIGTNVGLKTIVDQTCWDLLYNVNLYRKDYLELEVFGRFLQEFYDHDDLLFFLYVRSVLAKVLHISFKARWQKKFDGVSGQPKALWISYKEAAHVARIVFGSDNEGLFRDFMRLITPQMVGEKTASGDSRRIDITEYLHLSVV 316
BLAST of mRNA_H-paniculata_contig2404.6508.1 vs. uniprot
Match: A0A812U9B1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812U9B1_9DINO) HSP 1 Score: 101 bits (251), Expect = 6.240e-18 Identity = 60/200 (30.00%), Postives = 106/200 (53.00%), Query Frame = 1
Query: 52 SLYPRLMTILTVTEDLDPQRRSIGWVIRLMDEIYDSRQGVETGDTILKYFIASFAAEEDHFNLDGRMRRHTSFPTFAYNHLKNKHGVKHVVRSVCLDLVCNAHIHRRRHPEVEVFARFLEEFYGEKELYFFLDVRAQVQRMTRVCCRRQKTNT-----------QTVWMSHADCVRVARGVFVDTTTLYFRDLIDTIESQ 618
S+YP+ +++++ +++ P+ R + W++RL++EIYD+R +T + + A+ A + R + FP+F ++G+ ++ C DL+ N H R+ + EVEVFARFLEE+Y +L FFL VR+ VQ+ R R + T + ++MS +C VAR VF +R + ++S+
Sbjct: 96 SVYPKFYSLISLRDNIAPKLRPLSWLMRLIEEIYDNRYARDTAELREEAEGAAGATAAP-----PKSRGPSDFPSFVVEFFSKRYGLPQLIDQTCWDLLYNVHAARKEYLEVEVFARFLEEYYDPDDLLFFLYVRSVVQKELRFTFRSRWTELGKSVLGADKTPKAIFMSQRECQLVARVVFGAEGDPLYRTFMALVDSR 290
BLAST of mRNA_H-paniculata_contig2404.6508.1 vs. uniprot
Match: A0A482S8G9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S8G9_9ARCH) HSP 1 Score: 88.2 bits (217), Expect = 6.730e-15 Identity = 60/233 (25.75%), Postives = 118/233 (50.64%), Query Frame = 1
Query: 22 VRVAG-ETIGISLYPRLMTILTVTED-LDPQRRSIGWVIRLMDEIYDSRQGVETGDTILKYFIASFAAEEDHFNLDGRMRRHTSFPTFAYNHLKNKHGVKHVVRSVCLDLVCNAHIHRRRHPEVEVFARFLEEFYGEKELYFFLDVRAQVQRMTRVCCRRQKTN-------TQTVWMSHADCVRVARGVFVDTTTLYFRDLIDTIESQA-SCDHEGGHSKRISVSDFFYLAMV 690
VR+ G E + YPR +++ D + P+ R + W+++ ++++YD+R E + E+D D + FP F + G+K ++ +C D++ + + +RR + E+E+FARFL+EFY +L F+L VR+ + ++ V + + ++ WMS+ + V +AR VF + +RD I I Q + ++RI ++++ +L++V
Sbjct: 99 VRIVGVEPFDYTAYPRFSSLIANRGDTVKPKLRPLSWLMKHVEDVYDARFEHEKNEV---------EREDDSPAFDLIL---LIFPIFVVRKVGTNVGLKSLLDQMCWDILHSVNTYRRDYLELEIFARFLQEFYDHDDLLFYLYVRSVISKVLHVNFKNRWVKFDGPGRQPRSQWMSYREAVHIARIVFGSDSEDMYRDFILLITPQMIGSKTDTTDTRRIDITEYLHLSVV 319
BLAST of mRNA_H-paniculata_contig2404.6508.1 vs. uniprot
Match: A0A2R5G9E0_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G9E0_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 2.540e-14 Identity = 65/246 (26.42%), Postives = 117/246 (47.56%), Query Frame = 1
Query: 25 RVAGETIGISLYPRLMTILTVTEDLDPQRRSIGWVIRLMDEIYDSRQGVETGDTILKYFIASFAAEEDHFNLDGRMRRHTSFPTFAYNHLKNKHGVKHVVRSVCLDLVCNAHIHRRRHPEVEVFARFLEEFYGEKELYFFLDVRAQ----VQRMTRV------CCRRQKTNTQT---VWMSHADCVRVARGVFVDTTTLY----FRDLIDTIESQASCDHEGGHS-------KRISVSDFFYLAMV 690
R + + + Y + +++ + + L+P+ RS+ W+ L++++YD R V++ KY + FP F +HL ++G++ ++ V D+V + H HRR EVEVFARFLEE+Y ++L F+L VR+ VQR R +R T+T++ V++ + VA+ +F + + F L+D S D E G++ + V+ +LA+
Sbjct: 151 RKSADEEDFATYSKFCSLIEMRDKLEPRPRSLKWLNGLINDVYDDRAAVKS-----KYDLEELRI----------------FPVFVMDHLGKRYGLRQIIDQVAWDMVLSVHTHRRHRIEVEVFARFLEEYYDREDLRFYLRVRSITDNIVQRSVRAGWSKESVSQRSTTSTRSDIHVYLKWNEVEAVAKHLFGSSDSAERQETFLALVDENAMPLSSDAESGYAGDSETNAPLVEVAQLLHLAVA 375 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2404.6508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2404.6508.1 >prot_H-paniculata_contig2404.6508.1 ID=prot_H-paniculata_contig2404.6508.1|Name=mRNA_H-paniculata_contig2404.6508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1104bp RHEDDEVVRVAGETIGISLYPRLMTILTVTEDLDPQRRSIGWVIRLMDEIback to top mRNA from alignment at H-paniculata_contig2404:5574..14258+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2404.6508.1 ID=mRNA_H-paniculata_contig2404.6508.1|Name=mRNA_H-paniculata_contig2404.6508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8685bp|location=Sequence derived from alignment at H-paniculata_contig2404:5574..14258+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2404:5574..14258+ >mRNA_H-paniculata_contig2404.6508.1 ID=mRNA_H-paniculata_contig2404.6508.1|Name=mRNA_H-paniculata_contig2404.6508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6624bp|location=Sequence derived from alignment at H-paniculata_contig2404:5574..14258+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |