mRNA_H-paniculata_contig24011.6499.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24011.6499.1
Unique NamemRNA_H-paniculata_contig24011.6499.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24011.6499.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 55.1 bits (131), Expect = 1.750e-7
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   19 PLELVHTDIARPVDKP-FGGCRFAIIFVDDYSRMCELYTLRQKLE 150
            PLE+VHTDIA P D P  GG R+ + F+DD+SR C +Y L++K E
Sbjct: 1310 PLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSE 1354          
BLAST of mRNA_H-paniculata_contig24011.6499.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY)

HSP 1 Score: 55.1 bits (131), Expect = 1.750e-7
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   19 PLELVHTDIARPVDKP-FGGCRFAIIFVDDYSRMCELYTLRQKLE 150
            PLE+VHTDIA P D P  GG R+ + F+DD+SR C +Y L++K E
Sbjct:  388 PLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSE 432          
BLAST of mRNA_H-paniculata_contig24011.6499.1 vs. uniprot
Match: A0A8J6HPP1_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HPP1_TENMO)

HSP 1 Score: 53.5 bits (127), Expect = 6.100e-7
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1
Query:   10 TTEPLELVHTDIARPVD-KPFGGCRFAIIFVDDYSRMCELYTLRQKLE 150
            TTEPLELVHTD+  P+      G R+ + F+DD SR CE+Y +++K E
Sbjct:  390 TTEPLELVHTDVCGPMRVNSLAGLRYFVTFIDDKSRWCEVYFMKKKSE 437          
BLAST of mRNA_H-paniculata_contig24011.6499.1 vs. uniprot
Match: A0A8H8JVA7_9AGAM (Pol polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JVA7_9AGAM)

HSP 1 Score: 53.5 bits (127), Expect = 6.110e-7
Identity = 21/45 (46.67%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   10 TTEPLELVHTDIARPVDKPFGGCRFAIIFVDDYSRMCELYTLRQK 144
            T++PLEL+H+D+  P+D   GG R+ ++FVDDY+RM  +  L+ K
Sbjct:  139 TSQPLELLHSDVCGPLDASIGGVRYVLLFVDDYTRMAWVCLLKTK 183          
BLAST of mRNA_H-paniculata_contig24011.6499.1 vs. uniprot
Match: A0A1J3K4I8_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3K4I8_NOCCA)

HSP 1 Score: 53.5 bits (127), Expect = 6.120e-7
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1
Query:   10 TTEPLELVHTDIARPVDKP-FGGCRFAIIFVDDYSRMCELYTLRQK 144
            +T+ LE++HTDI  P D P FGG ++ I F+DD+SR C LY L +K
Sbjct:  481 STQLLEIIHTDICGPFDVPTFGGEKYFITFIDDFSRYCYLYLLHEK 526          
BLAST of mRNA_H-paniculata_contig24011.6499.1 vs. uniprot
Match: A0A4Y1REW6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REW6_PRUDU)

HSP 1 Score: 52.8 bits (125), Expect = 1.140e-6
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 1
Query:   19 PLELVHTDIARPV-DKPFGGCRFAIIFVDDYSRMCELYTLRQK 144
            PLEL+HTD+  P+ ++  GG ++ I F+DDYSRMC +Y LR K
Sbjct:  432 PLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNK 474          
BLAST of mRNA_H-paniculata_contig24011.6499.1 vs. uniprot
Match: A0A4Y1R3A1_PRUDU (BURP domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R3A1_PRUDU)

HSP 1 Score: 52.8 bits (125), Expect = 1.140e-6
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 1
Query:   19 PLELVHTDIARPV-DKPFGGCRFAIIFVDDYSRMCELYTLRQK 144
            PLEL+HTD+  P+ ++  GG ++ I F+DDYSRMC +Y LR K
Sbjct:  124 PLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNK 166          
BLAST of mRNA_H-paniculata_contig24011.6499.1 vs. uniprot
Match: A0A0V1D8H9_TRIBR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella britovi TaxID=45882 RepID=A0A0V1D8H9_TRIBR)

HSP 1 Score: 52.4 bits (124), Expect = 1.560e-6
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 1
Query:   19 PLELVHTDIARPV-DKPFGGCRFAIIFVDDYSRMCELYTLRQKLE 150
            PLEL+HTDI  P+     GG ++ + F+DDYSR CE+Y L+ + E
Sbjct:   35 PLELIHTDICGPMRQNSIGGSKYFVTFIDDYSRWCEIYFLKNRNE 79          
BLAST of mRNA_H-paniculata_contig24011.6499.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 52.4 bits (124), Expect = 1.570e-6
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 1
Query:   22 LELVHTDIARPVDKP-FGGCRFAIIFVDDYSRMCELYTLRQKLE 150
            LE+VHTDIA P D P  GG R+ + F+DD+SR C +Y L++K E
Sbjct:  390 LEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSE 433          
BLAST of mRNA_H-paniculata_contig24011.6499.1 vs. uniprot
Match: A0A8H8MSC5_9AGAM (Pol polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8MSC5_9AGAM)

HSP 1 Score: 52.0 bits (123), Expect = 2.140e-6
Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   10 TTEPLELVHTDIARPVDKPFGGCRFAIIFVDDYSRMCELYTLRQK 144
            T++PLEL+H+D+  P+D   GG R+ + FVDDY+RM  +  L+ K
Sbjct:  613 TSQPLELLHSDVCGPLDASIGGVRYVLSFVDDYTRMAWVCLLKTK 657          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24011.6499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A2WXP0_HIBSY1.750e-755.56Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10... [more]
A0A6A3BY51_HIBSY1.750e-755.56Histone acetyltransferase n=2 Tax=Hibiscus syriacu... [more]
A0A8J6HPP1_TENMO6.100e-750.00Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A8H8JVA7_9AGAM6.110e-746.67Pol polyprotein/retrotransposon n=1 Tax=Ceratobasi... [more]
A0A1J3K4I8_NOCCA6.120e-752.17Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1REW6_PRUDU1.140e-653.49Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1R3A1_PRUDU1.140e-653.49BURP domain-containing protein n=1 Tax=Prunus dulc... [more]
A0A0V1D8H9_TRIBR1.560e-648.89Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A2WSU7_HIBSY1.570e-654.55Integrase catalytic domain-containing protein n=2 ... [more]
A0A8H8MSC5_9AGAM2.140e-646.67Pol polyprotein/retrotransposon n=1 Tax=Ceratobasi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24011contigH-paniculata_contig24011:3568..3717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929689.3762279-CDS-H-paniculata_contig24011:3567..37171622929689.3762279-CDS-H-paniculata_contig24011:3567..3717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24011 3568..3717 +
1691480968.266564-CDS-H-paniculata_contig24011:3567..37171691480968.266564-CDS-H-paniculata_contig24011:3567..3717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24011 3568..3717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24011.6499.1prot_H-paniculata_contig24011.6499.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24011 3568..3717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24011.6499.1

>prot_H-paniculata_contig24011.6499.1 ID=prot_H-paniculata_contig24011.6499.1|Name=mRNA_H-paniculata_contig24011.6499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
EELTTEPLELVHTDIARPVDKPFGGCRFAIIFVDDYSRMCELYTLRQKLE
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mRNA from alignment at H-paniculata_contig24011:3568..3717+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24011.6499.1 ID=mRNA_H-paniculata_contig24011.6499.1|Name=mRNA_H-paniculata_contig24011.6499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at H-paniculata_contig24011:3568..3717+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAGCTGACGACCGAGCCGTTGGAGCTGGTGCACACCGATATAGCCAG ACCGGTGGATAAGCCCTTCGGAGGATGTCGCTTCGCCATCATCTTCGTCG ACGACTACAGCAGAATGTGCGAACTCTATACCTTGCGACAAAAGTTGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig24011:3568..3717+

>mRNA_H-paniculata_contig24011.6499.1 ID=mRNA_H-paniculata_contig24011.6499.1|Name=mRNA_H-paniculata_contig24011.6499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig24011:3568..3717+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAGCTGACGACCGAGCCGTTGGAGCTGGTGCACACCGATATAGCCAG
ACCGGTGGATAAGCCCTTCGGAGGATGTCGCTTCGCCATCATCTTCGTCG
ACGACTACAGCAGAATGTGCGAACTCTATACCTTGCGACAAAAGTTGGAG
GAAGAGCTGACGACCGAGCCGTTGGAGCTGGTGCACACCGATATAGCCAG
ACCGGTGGATAAGCCCTTCGGAGGATGTCGCTTCGCCATCATCTTCGTCG
ACGACTACAGCAGAATGTGCGAACTCTATACCTTGCGACAAAAGTTGGAG
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