mRNA_H-paniculata_contig2399.6488.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: D8LFL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL9_ECTSI) HSP 1 Score: 390 bits (1003), Expect = 2.900e-130 Identity = 211/311 (67.85%), Postives = 240/311 (77.17%), Query Frame = 1
Query: 7 FVVTDFDRETVLDAEVYLSMRSGEYWQNNPTANRLFMVLDNVSAPLEGDVELEVNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGKRLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAG-----------GGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGKKSED-PEAERVGPATVLLDRLREQEKEEDHFTYIVLTLRDKHVE 903
FVVTDFDRETV+D VY SMR+G+YW+ NP ANRLF+VLDN+SAPLEGDVELEV+YQPHFNTITKTG+A+FSK+PHAVAEL+DNSIQAT N G R VE+EVE+G G+ SFLVV+DNGRGMNA GLKDFATYFLTQENRGVSGP SS +V P AG + + G GG+ G KG ICSGFISKFGVGALQAGFYIGSCLTVVTKTA P V EFVM+EAE+ERRA N+AMF+DKI+ RN GK E+ PEAER GPA LL RLR +E + HFTYIVLTLRD+H+E
Sbjct: 5 FVVTDFDRETVIDEAVYSSMRAGDYWRRNPKANRLFLVLDNISAPLEGDVELEVSYQPHFNTITKTGDAHFSKIPHAVAELVDNSIQATTDNPGPRTVEIEVELG-GRGGSFLVVKDNGRGMNAAGLKDFATYFLTQENRGVSGPLGSSTPAFVESQPSVSQGGSASGSAGGAQTANGKGKGPAAPRPHGGTPGKMKGSICSGFISKFGVGALQAGFYIGSCLTVVTKTARLPDVCEFVMNEAEFERRAETNSAMFRDKIKQRNPGKSREEGPEAERNGPAHELLGRLRAEEVGKSHFTYIVLTLRDQHME 314
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: A0A6H5JXR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR4_9PHAE) HSP 1 Score: 291 bits (745), Expect = 6.140e-86 Identity = 166/302 (54.97%), Postives = 193/302 (63.91%), Query Frame = 1
Query: 1 ETFVVTDFDRETVLDAEVYLSMRSGEYWQNNPTANRLFMVLDNVSAPLEGDVELEVNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGKRLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAGGGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGK-KSEDPEAERVGPATVLLDRLREQEKEEDHFTYIVLTLRDKHVE 903
E FVVTDFDRETV+D VYLSMR+G+YW+ NP ANRLF+VLD+++ PLEGDVELEV+YQPHFNTITK+G+A+FSK+PHAVAEL+DNSIQAT N G R VE+EVE+G G+ SFLVV+DNGRGMNA GLKDFATYFLTQ VVTKTA P V EFVM+EAE+ERRA N+AMF+DKI+ RN GK ++E PEAER GPA LL RLR QE + HFTYIVLTLRD+HVE
Sbjct: 40 EEFVVTDFDRETVIDEAVYLSMRAGDYWRRNPKANRLFLVLDSINDPLEGDVELEVSYQPHFNTITKSGDAHFSKIPHAVAELVDNSIQATTDNVGPRTVEIEVELG-GRGGSFLVVKDNGRGMNASGLKDFATYFLTQ----------------------------------------------------------------------------VVTKTARLPDVCEFVMNEAEFERRAETNSAMFRDKIKQRNPGKSRAEGPEAERNGPAHELLGRLRAQEVGKSHFTYIVLTLRDQHVE 264
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: D7FYN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYN6_ECTSI) HSP 1 Score: 208 bits (529), Expect = 4.650e-61 Identity = 133/300 (44.33%), Postives = 176/300 (58.67%), Query Frame = 1
Query: 4 TFVVTDFDRETVLDAEVYLSMRSGEYWQNNPTANRLFMVLDNVSAPLEGDVELEVNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGKRLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAGGGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGKKSEDPEAERVGPATVLLDRLREQEKEEDHFTYIVLTLRDKHVE 903
+FVV DR++V+ +VY SM SGEY +R F+VLD++ A LE ++ + + PH T+ G ++ +++ VAELIDNSIQAT NA +R VEVEV + GK +SFLVVRDNG GM+AKGL+DFATY L E RG+ GP + S R G+R I SG ISKFGVGAL+AGFYIGS + VVTK P V+ FV+DE ++R N+ ++ + LR G E + LL RLRE+E E DHFTYIVL+LR++HV+
Sbjct: 45 SFVVATSDRKSVITDDVYRSMVSGEYLGGQKQLDRTFLVLDHIGARLEVPAKMAIGFSPHIGTLLGAGASHLNRIDDGVAELIDNSIQATRGNA-ERKVEVEVVL-NGKSTSFLVVRDNGCGMHAKGLEDFATYALNMEARGMQGPTATGGGSSTSSV-----------RQGMRA--------------IGSGEISKFGVGALEAGFYIGSRIQVVTKAQGNPDVHVFVLDEDLLKQRQENDEPVYTGDVFLRPPG----GIEEQGSSALKKLLTRLREREPEMDHFTYIVLSLREEHVD 313
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: A0A6P8HKA8_ACTTE (structural maintenance of chromosomes flexible hinge domain-containing protein 1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HKA8_ACTTE) HSP 1 Score: 115 bits (288), Expect = 5.780e-25 Identity = 83/249 (33.33%), Postives = 121/249 (48.59%), Query Frame = 1
Query: 166 VNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGKRLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAGGGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGKKS--EDPEAERVGPATVLLDRLREQEKEEDHFTYIVLT-LRDKHVE 903
+ Y H N +T++G +FS A E +DNSIQAT N K + ++E+ + + DNG GM +GLK FATYFL+Q +RG+ P++ ++ FISKFGVGA QAGFY+G + VVTK P V E + + + +RA + +F+D +RN G S E PE E+ L L +QE + + FT +V+T L+D H+E
Sbjct: 90 LRYDVHPNALTQSGNYHFSSSYQAFCEFVDNSIQATAKNLEKDIPR-KIELHIFLKEKVAAIFDNGEGMTYEGLKAFATYFLSQADRGLEKPELDQIPAFLDS------------------------------------FISKFGVGATQAGFYLGDRIKVVTKRDDCPYVTEITISKEKLHQRANDGKPVFEDYRCIRNPGDMSTVETPEEEKC------LKDLIQQEMDHEQFTCVVITGLKDTHIE 295
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: A7S888_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7S888_NEMVE) HSP 1 Score: 114 bits (286), Expect = 1.070e-24 Identity = 83/247 (33.60%), Postives = 119/247 (48.18%), Query Frame = 1
Query: 166 VNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGKRLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAGGGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGKKSEDPEAERVGPATVLLDRLREQEKEEDHFTYIVLT-LRDKHVE 903
+ Y H N +T++G +F A E IDNSIQAT++N +R +E +++ + VV DNG+GM +GLK FATYFL+Q +RG+ QV ++ G ISKFGVGA QAGFY+G + VVTK P V E + + + +RA +F+D +RN G D + L L E EK+ FTY+V+T ++D H+E
Sbjct: 186 LRYDVHPNALTQSGNYHFVSSYQAFCEFIDNSIQATNNNH-ERDLERNIKLQIHSKDRVAVVFDNGQGMFYEGLKAFATYFLSQADRGLEPDQVDQTPAFLD------------------------------------GMISKFGVGATQAGFYLGDRIKVVTKRVECPYVTEITISKEKLHQRADEGKPVFEDYRCIRNTG----DTSTLELDEEQRCLKELVESEKKFSQFTYVVITGIKDSHME 391
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: UPI001CF32C8A (structural maintenance of chromosomes flexible hinge domain-containing protein 1-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF32C8A) HSP 1 Score: 114 bits (285), Expect = 1.440e-24 Identity = 88/250 (35.20%), Postives = 122/250 (48.80%), Query Frame = 1
Query: 166 VNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGK---RLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAGGGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGKKSEDPEAERVGPATVLLDRLREQEKEEDHFTYIVLT-LRDKHVE 903
+ Y H N +T++G +FS A AE IDNSIQAT N K R++EV V + + +VV DNG GM +GLK FATYFL+Q +RG+ + V LTPG G ISKFGVGA QAGFY+G + V+TK P V E + + + ++RA +F+D +RN G D G T L+ + + E FT IV++ +RD H++
Sbjct: 90 MRYDVHPNALTQSGNYHFSASYQAFAEFIDNSIQATSINNTKDMDRVIEVHVFL----KDKLVVVFDNGEGMTYEGLKAFATYFLSQADRGLEREE-------VDLTPG-----------------------------YLDGAISKFGVGATQAGFYLGDRIKVITKKDECPFVTEITISKEKLQQRAKEGKPVFEDYRWIRNPG----DTSTLAPGEETRCLEDIIKGEAAYPQFTMIVISGIRDFHID 295
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: UPI000A2A7652 (structural maintenance of chromosomes flexible hinge domain-containing protein 1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7652) HSP 1 Score: 107 bits (268), Expect = 2.460e-22 Identity = 82/249 (32.93%), Postives = 116/249 (46.59%), Query Frame = 1
Query: 166 VNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGKRLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAGGGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGKKS--EDPEAERVGPATVLLDRLREQEKEEDHFTYIVLT-LRDKHVE 903
+ Y H N +T++G +FS A E +DNSIQAT +N K L +++ + V DNG GM GLK FATYFL+Q +RG+ ++ Y+ GFISKFGVGA QAGFY+G + VVTK P V E + + + +RA +F+D +RN G S E PE + L L E E + FT +V+T L++ H++
Sbjct: 92 LRYDVHPNALTQSGNYHFSSGYQAFCEFVDNSIQATATNHEKNLPRT-IDLHIFLKEKLAAVFDNGEGMTYDGLKAFATYFLSQADRGLERSELDQIPAYLD------------------------------------GFISKFGVGATQAGFYLGDRIKVVTKRDDCPYVTEITISKEKLHKRADEGKPVFEDYRCIRNPGDLSTLETPEERKC------LKELIENECKYKQFTCVVITGLKESHID 297
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: UPI0009E56605 (structural maintenance of chromosomes flexible hinge domain-containing protein 1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E56605) HSP 1 Score: 107 bits (267), Expect = 3.340e-22 Identity = 80/246 (32.52%), Postives = 114/246 (46.34%), Query Frame = 1
Query: 166 VNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGKRLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAGGGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGKKSEDPEAERVGPATVLLDRLREQEKEEDHFTYIVLT-LRDKHV 900
+ Y H N +T++G +FS A E IDNSIQAT +N R +E ++I R + + DNG GM +GLK FATYFL+Q +RG+ +V Y+ G ISKFGVGA QAGFY+G + V+TK P V E + + + + RA +F+D +RN D + G L + E+E FT I++T +RD H+
Sbjct: 90 MRYDVHPNALTQSGNYHFSASYQAFCEFIDNSIQATSTN-NCRDMERTIDIHIFLRDKLVAIFDNGEGMTYEGLKAFATYFLSQADRGLEKEEVDLIPAYLD------------------------------------GAISKFGVGATQAGFYLGDRIKVITKREECPYVTEIAISKEKLQERAKEGKPVFEDYRWIRNPS----DTSTLQPGEEERCLKDIIEREAAFSQFTMIIITGIRDIHI 294
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: A0A2B4STX2_STYPI (Structural maintenance of chromosomes flexible hinge domain-containing protein 1 n=4 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4STX2_STYPI) HSP 1 Score: 105 bits (263), Expect = 1.120e-21 Identity = 80/246 (32.52%), Postives = 114/246 (46.34%), Query Frame = 1
Query: 166 VNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGKRLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAGGGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGKKSEDPEAERVGPATVLLDRLREQEKEEDHFTYIVLT-LRDKHV 900
+ Y H N +T++G +FS A E IDNSIQAT +N K + E V+I + + + DNG GM +GLK FATYFL+Q +RG+ +V Y+ G ISKFGVGA QAGFY+G + V+TK P V E + + + ++RA +F+D +RN D G L + E+E FT I++T +RD H+
Sbjct: 129 MRYDVHPNALTQSGNYHFSASYQAFCEFIDNSIQATSTNNCKDM-ERTVDIHIFLKDKLVAIFDNGEGMTYEGLKAFATYFLSQVDRGLEKEEVDLIPAYLD------------------------------------GCISKFGVGATQAGFYLGDRIKVITKREECPYVTEISISKEKLQQRAKEGKPVFEDYRWIRNPS----DTSTLEPGEEERCLRDIIEREAAYSQFTMIIITGIRDIHI 333
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: A0A4W4DSQ1_ELEEL (Structural maintenance of chromosomes flexible hinge domain containing 1 n=7 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4DSQ1_ELEEL) HSP 1 Score: 101 bits (251), Expect = 4.120e-20 Identity = 85/301 (28.24%), Postives = 141/301 (46.84%), Query Frame = 1
Query: 1 ETFVVTDFDRETVLDAEVYLSMRSGEYWQNNPTANRLFMVLDNVSAPLEGDVELEVNYQPHFNTITKTGEANF------SKVPHAVAELIDNSIQATDSNAGKRLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAGGGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGKKSE-DPEAERVGPATVLLDRLREQEKEEDHFTYIVLT 882
E FV+T DR + +A++ T + +L +V L + + Y PH++TI ++G+ + + +P+A AELIDN++ AT N G R +++ + + S +VV DNGRGM AK L ++A Y L++ NR + S YV +P + R+ + IS FGVG QA FYIG + +++K P V+EFVM + +++++ N ++ I R S + + ER L L +E+ +D FT +V+T
Sbjct: 7 EKFVLTTTDRREI-NADL--------------TDGKTLHLLQSVDQELAVATQERIEYLPHYHTIVQSGQYEYYASEGRNALPYAFAELIDNALSATSKNPGVRSIDIRLLFDDTQGGSAVVVMDNGRGMTAKELNNWAVYRLSKFNRDYA----MSSGVYVRPSP-------------VPRS--------------LNSDISYFGVGGKQAVFYIGQSVRIISKPLGSPDVHEFVMSKEDFQKKEKNKEEIYSGVILNRKPADDSHVNTDEER------FLHSLVREEEGKDSFTAVVIT 255 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2399.6488.1 >prot_H-paniculata_contig2399.6488.1 ID=prot_H-paniculata_contig2399.6488.1|Name=mRNA_H-paniculata_contig2399.6488.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=301bp ETFVVTDFDRETVLDAEVYLSMRSGEYWQNNPTANRLFMVLDNVSAPLEGback to top mRNA from alignment at H-paniculata_contig2399:394..5366- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2399.6488.1 ID=mRNA_H-paniculata_contig2399.6488.1|Name=mRNA_H-paniculata_contig2399.6488.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4973bp|location=Sequence derived from alignment at H-paniculata_contig2399:394..5366- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2399:394..5366- >mRNA_H-paniculata_contig2399.6488.1 ID=mRNA_H-paniculata_contig2399.6488.1|Name=mRNA_H-paniculata_contig2399.6488.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1806bp|location=Sequence derived from alignment at H-paniculata_contig2399:394..5366- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |