mRNA_H-paniculata_contig2399.6488.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2399.6488.1
Unique NamemRNA_H-paniculata_contig2399.6488.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: D8LFL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFL9_ECTSI)

HSP 1 Score: 390 bits (1003), Expect = 2.900e-130
Identity = 211/311 (67.85%), Postives = 240/311 (77.17%), Query Frame = 1
Query:    7 FVVTDFDRETVLDAEVYLSMRSGEYWQNNPTANRLFMVLDNVSAPLEGDVELEVNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGKRLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAG-----------GGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGKKSED-PEAERVGPATVLLDRLREQEKEEDHFTYIVLTLRDKHVE 903
            FVVTDFDRETV+D  VY SMR+G+YW+ NP ANRLF+VLDN+SAPLEGDVELEV+YQPHFNTITKTG+A+FSK+PHAVAEL+DNSIQAT  N G R VE+EVE+G G+  SFLVV+DNGRGMNA GLKDFATYFLTQENRGVSGP  SS   +V   P           AG  + + G           GG+ G  KG ICSGFISKFGVGALQAGFYIGSCLTVVTKTA  P V EFVM+EAE+ERRA  N+AMF+DKI+ RN GK  E+ PEAER GPA  LL RLR +E  + HFTYIVLTLRD+H+E
Sbjct:    5 FVVTDFDRETVIDEAVYSSMRAGDYWRRNPKANRLFLVLDNISAPLEGDVELEVSYQPHFNTITKTGDAHFSKIPHAVAELVDNSIQATTDNPGPRTVEIEVELG-GRGGSFLVVKDNGRGMNAAGLKDFATYFLTQENRGVSGPLGSSTPAFVESQPSVSQGGSASGSAGGAQTANGKGKGPAAPRPHGGTPGKMKGSICSGFISKFGVGALQAGFYIGSCLTVVTKTARLPDVCEFVMNEAEFERRAETNSAMFRDKIKQRNPGKSREEGPEAERNGPAHELLGRLRAEEVGKSHFTYIVLTLRDQHME 314          
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: A0A6H5JXR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR4_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 6.140e-86
Identity = 166/302 (54.97%), Postives = 193/302 (63.91%), Query Frame = 1
Query:    1 ETFVVTDFDRETVLDAEVYLSMRSGEYWQNNPTANRLFMVLDNVSAPLEGDVELEVNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGKRLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAGGGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGK-KSEDPEAERVGPATVLLDRLREQEKEEDHFTYIVLTLRDKHVE 903
            E FVVTDFDRETV+D  VYLSMR+G+YW+ NP ANRLF+VLD+++ PLEGDVELEV+YQPHFNTITK+G+A+FSK+PHAVAEL+DNSIQAT  N G R VE+EVE+G G+  SFLVV+DNGRGMNA GLKDFATYFLTQ                                                                            VVTKTA  P V EFVM+EAE+ERRA  N+AMF+DKI+ RN GK ++E PEAER GPA  LL RLR QE  + HFTYIVLTLRD+HVE
Sbjct:   40 EEFVVTDFDRETVIDEAVYLSMRAGDYWRRNPKANRLFLVLDSINDPLEGDVELEVSYQPHFNTITKSGDAHFSKIPHAVAELVDNSIQATTDNVGPRTVEIEVELG-GRGGSFLVVKDNGRGMNASGLKDFATYFLTQ----------------------------------------------------------------------------VVTKTARLPDVCEFVMNEAEFERRAETNSAMFRDKIKQRNPGKSRAEGPEAERNGPAHELLGRLRAQEVGKSHFTYIVLTLRDQHVE 264          
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: D7FYN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYN6_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 4.650e-61
Identity = 133/300 (44.33%), Postives = 176/300 (58.67%), Query Frame = 1
Query:    4 TFVVTDFDRETVLDAEVYLSMRSGEYWQNNPTANRLFMVLDNVSAPLEGDVELEVNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGKRLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAGGGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGKKSEDPEAERVGPATVLLDRLREQEKEEDHFTYIVLTLRDKHVE 903
            +FVV   DR++V+  +VY SM SGEY       +R F+VLD++ A LE   ++ + + PH  T+   G ++ +++   VAELIDNSIQAT  NA +R VEVEV +  GK +SFLVVRDNG GM+AKGL+DFATY L  E RG+ GP  +      S             R G+R               I SG ISKFGVGAL+AGFYIGS + VVTK    P V+ FV+DE   ++R  N+  ++   + LR  G      E +       LL RLRE+E E DHFTYIVL+LR++HV+
Sbjct:   45 SFVVATSDRKSVITDDVYRSMVSGEYLGGQKQLDRTFLVLDHIGARLEVPAKMAIGFSPHIGTLLGAGASHLNRIDDGVAELIDNSIQATRGNA-ERKVEVEVVL-NGKSTSFLVVRDNGCGMHAKGLEDFATYALNMEARGMQGPTATGGGSSTSSV-----------RQGMRA--------------IGSGEISKFGVGALEAGFYIGSRIQVVTKAQGNPDVHVFVLDEDLLKQRQENDEPVYTGDVFLRPPG----GIEEQGSSALKKLLTRLREREPEMDHFTYIVLSLREEHVD 313          
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: A0A6P8HKA8_ACTTE (structural maintenance of chromosomes flexible hinge domain-containing protein 1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HKA8_ACTTE)

HSP 1 Score: 115 bits (288), Expect = 5.780e-25
Identity = 83/249 (33.33%), Postives = 121/249 (48.59%), Query Frame = 1
Query:  166 VNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGKRLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAGGGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGKKS--EDPEAERVGPATVLLDRLREQEKEEDHFTYIVLT-LRDKHVE 903
            + Y  H N +T++G  +FS    A  E +DNSIQAT  N  K +   ++E+    +     + DNG GM  +GLK FATYFL+Q +RG+  P++     ++                                      FISKFGVGA QAGFY+G  + VVTK    P V E  + + +  +RA +   +F+D   +RN G  S  E PE E+       L  L +QE + + FT +V+T L+D H+E
Sbjct:   90 LRYDVHPNALTQSGNYHFSSSYQAFCEFVDNSIQATAKNLEKDIPR-KIELHIFLKEKVAAIFDNGEGMTYEGLKAFATYFLSQADRGLEKPELDQIPAFLDS------------------------------------FISKFGVGATQAGFYLGDRIKVVTKRDDCPYVTEITISKEKLHQRANDGKPVFEDYRCIRNPGDMSTVETPEEEKC------LKDLIQQEMDHEQFTCVVITGLKDTHIE 295          
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: A7S888_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7S888_NEMVE)

HSP 1 Score: 114 bits (286), Expect = 1.070e-24
Identity = 83/247 (33.60%), Postives = 119/247 (48.18%), Query Frame = 1
Query:  166 VNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGKRLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAGGGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGKKSEDPEAERVGPATVLLDRLREQEKEEDHFTYIVLT-LRDKHVE 903
            + Y  H N +T++G  +F     A  E IDNSIQAT++N  +R +E  +++    +    VV DNG+GM  +GLK FATYFL+Q +RG+   QV     ++                                     G ISKFGVGA QAGFY+G  + VVTK    P V E  + + +  +RA     +F+D   +RN G    D     +      L  L E EK+   FTY+V+T ++D H+E
Sbjct:  186 LRYDVHPNALTQSGNYHFVSSYQAFCEFIDNSIQATNNNH-ERDLERNIKLQIHSKDRVAVVFDNGQGMFYEGLKAFATYFLSQADRGLEPDQVDQTPAFLD------------------------------------GMISKFGVGATQAGFYLGDRIKVVTKRVECPYVTEITISKEKLHQRADEGKPVFEDYRCIRNTG----DTSTLELDEEQRCLKELVESEKKFSQFTYVVITGIKDSHME 391          
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: UPI001CF32C8A (structural maintenance of chromosomes flexible hinge domain-containing protein 1-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF32C8A)

HSP 1 Score: 114 bits (285), Expect = 1.440e-24
Identity = 88/250 (35.20%), Postives = 122/250 (48.80%), Query Frame = 1
Query:  166 VNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGK---RLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAGGGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGKKSEDPEAERVGPATVLLDRLREQEKEEDHFTYIVLT-LRDKHVE 903
            + Y  H N +T++G  +FS    A AE IDNSIQAT  N  K   R++EV V +    +   +VV DNG GM  +GLK FATYFL+Q +RG+   +       V LTPG                                G ISKFGVGA QAGFY+G  + V+TK    P V E  + + + ++RA     +F+D   +RN G    D      G  T  L+ + + E     FT IV++ +RD H++
Sbjct:   90 MRYDVHPNALTQSGNYHFSASYQAFAEFIDNSIQATSINNTKDMDRVIEVHVFL----KDKLVVVFDNGEGMTYEGLKAFATYFLSQADRGLEREE-------VDLTPG-----------------------------YLDGAISKFGVGATQAGFYLGDRIKVITKKDECPFVTEITISKEKLQQRAKEGKPVFEDYRWIRNPG----DTSTLAPGEETRCLEDIIKGEAAYPQFTMIVISGIRDFHID 295          
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: UPI000A2A7652 (structural maintenance of chromosomes flexible hinge domain-containing protein 1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7652)

HSP 1 Score: 107 bits (268), Expect = 2.460e-22
Identity = 82/249 (32.93%), Postives = 116/249 (46.59%), Query Frame = 1
Query:  166 VNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGKRLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAGGGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGKKS--EDPEAERVGPATVLLDRLREQEKEEDHFTYIVLT-LRDKHVE 903
            + Y  H N +T++G  +FS    A  E +DNSIQAT +N  K L    +++    +     V DNG GM   GLK FATYFL+Q +RG+   ++     Y+                                     GFISKFGVGA QAGFY+G  + VVTK    P V E  + + +  +RA     +F+D   +RN G  S  E PE  +       L  L E E +   FT +V+T L++ H++
Sbjct:   92 LRYDVHPNALTQSGNYHFSSGYQAFCEFVDNSIQATATNHEKNLPRT-IDLHIFLKEKLAAVFDNGEGMTYDGLKAFATYFLSQADRGLERSELDQIPAYLD------------------------------------GFISKFGVGATQAGFYLGDRIKVVTKRDDCPYVTEITISKEKLHKRADEGKPVFEDYRCIRNPGDLSTLETPEERKC------LKELIENECKYKQFTCVVITGLKESHID 297          
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: UPI0009E56605 (structural maintenance of chromosomes flexible hinge domain-containing protein 1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E56605)

HSP 1 Score: 107 bits (267), Expect = 3.340e-22
Identity = 80/246 (32.52%), Postives = 114/246 (46.34%), Query Frame = 1
Query:  166 VNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGKRLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAGGGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGKKSEDPEAERVGPATVLLDRLREQEKEEDHFTYIVLT-LRDKHV 900
            + Y  H N +T++G  +FS    A  E IDNSIQAT +N   R +E  ++I    R   + + DNG GM  +GLK FATYFL+Q +RG+   +V     Y+                                     G ISKFGVGA QAGFY+G  + V+TK    P V E  + + + + RA     +F+D   +RN      D    + G     L  + E+E     FT I++T +RD H+
Sbjct:   90 MRYDVHPNALTQSGNYHFSASYQAFCEFIDNSIQATSTN-NCRDMERTIDIHIFLRDKLVAIFDNGEGMTYEGLKAFATYFLSQADRGLEKEEVDLIPAYLD------------------------------------GAISKFGVGATQAGFYLGDRIKVITKREECPYVTEIAISKEKLQERAKEGKPVFEDYRWIRNPS----DTSTLQPGEEERCLKDIIEREAAFSQFTMIIITGIRDIHI 294          
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: A0A2B4STX2_STYPI (Structural maintenance of chromosomes flexible hinge domain-containing protein 1 n=4 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4STX2_STYPI)

HSP 1 Score: 105 bits (263), Expect = 1.120e-21
Identity = 80/246 (32.52%), Postives = 114/246 (46.34%), Query Frame = 1
Query:  166 VNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGKRLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAGGGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGKKSEDPEAERVGPATVLLDRLREQEKEEDHFTYIVLT-LRDKHV 900
            + Y  H N +T++G  +FS    A  E IDNSIQAT +N  K + E  V+I    +   + + DNG GM  +GLK FATYFL+Q +RG+   +V     Y+                                     G ISKFGVGA QAGFY+G  + V+TK    P V E  + + + ++RA     +F+D   +RN      D      G     L  + E+E     FT I++T +RD H+
Sbjct:  129 MRYDVHPNALTQSGNYHFSASYQAFCEFIDNSIQATSTNNCKDM-ERTVDIHIFLKDKLVAIFDNGEGMTYEGLKAFATYFLSQVDRGLEKEEVDLIPAYLD------------------------------------GCISKFGVGATQAGFYLGDRIKVITKREECPYVTEISISKEKLQQRAKEGKPVFEDYRWIRNPS----DTSTLEPGEEERCLRDIIEREAAYSQFTMIIITGIRDIHI 333          
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Match: A0A4W4DSQ1_ELEEL (Structural maintenance of chromosomes flexible hinge domain containing 1 n=7 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4DSQ1_ELEEL)

HSP 1 Score: 101 bits (251), Expect = 4.120e-20
Identity = 85/301 (28.24%), Postives = 141/301 (46.84%), Query Frame = 1
Query:    1 ETFVVTDFDRETVLDAEVYLSMRSGEYWQNNPTANRLFMVLDNVSAPLEGDVELEVNYQPHFNTITKTGEANF------SKVPHAVAELIDNSIQATDSNAGKRLVEVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVSSYSGYVSLTPGGXXXXXXXSRAGLRRASAGGGSLGAKKGKICSGFISKFGVGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDKIRLRNAGKKSE-DPEAERVGPATVLLDRLREQEKEEDHFTYIVLT 882
            E FV+T  DR  + +A++              T  +   +L +V   L    +  + Y PH++TI ++G+  +      + +P+A AELIDN++ AT  N G R +++ +     +  S +VV DNGRGM AK L ++A Y L++ NR  +     S   YV  +P             + R+               +  IS FGVG  QA FYIG  + +++K    P V+EFVM + +++++  N   ++   I  R     S  + + ER       L  L  +E+ +D FT +V+T
Sbjct:    7 EKFVLTTTDRREI-NADL--------------TDGKTLHLLQSVDQELAVATQERIEYLPHYHTIVQSGQYEYYASEGRNALPYAFAELIDNALSATSKNPGVRSIDIRLLFDDTQGGSAVVVMDNGRGMTAKELNNWAVYRLSKFNRDYA----MSSGVYVRPSP-------------VPRS--------------LNSDISYFGVGGKQAVFYIGQSVRIISKPLGSPDVHEFVMSKEDFQKKEKNKEEIYSGVILNRKPADDSHVNTDEER------FLHSLVREEEGKDSFTAVVIT 255          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2399.6488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFL9_ECTSI2.900e-13067.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXR4_9PHAE6.140e-8654.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYN6_ECTSI4.650e-6144.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6P8HKA8_ACTTE5.780e-2533.33structural maintenance of chromosomes flexible hin... [more]
A7S888_NEMVE1.070e-2433.60Predicted protein n=2 Tax=Nematostella vectensis T... [more]
UPI001CF32C8A1.440e-2435.20structural maintenance of chromosomes flexible hin... [more]
UPI000A2A76522.460e-2232.93structural maintenance of chromosomes flexible hin... [more]
UPI0009E566053.340e-2232.52structural maintenance of chromosomes flexible hin... [more]
A0A2B4STX2_STYPI1.120e-2132.52Structural maintenance of chromosomes flexible hin... [more]
A0A4W4DSQ1_ELEEL4.120e-2028.24Structural maintenance of chromosomes flexible hin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2399contigH-paniculata_contig2399:394..5366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.8
Seed ortholog evalue3.6e-51
Seed eggNOG ortholog2880.D7FYN6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.inactivation of X chromosome by DNA methylation
EggNOG OGs28J2Q@1,2QREW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size903
Cds size903
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929686.321272-CDS-H-paniculata_contig2399:393..5131622929686.321272-CDS-H-paniculata_contig2399:393..513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2399 394..513 -
1691480967.1480632-CDS-H-paniculata_contig2399:393..5131691480967.1480632-CDS-H-paniculata_contig2399:393..513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2399 394..513 -
1622929686.3396482-CDS-H-paniculata_contig2399:1138..12761622929686.3396482-CDS-H-paniculata_contig2399:1138..1276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2399 1139..1276 -
1691480967.1588132-CDS-H-paniculata_contig2399:1138..12761691480967.1588132-CDS-H-paniculata_contig2399:1138..1276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2399 1139..1276 -
1622929686.3657439-CDS-H-paniculata_contig2399:1514..15841622929686.3657439-CDS-H-paniculata_contig2399:1514..1584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2399 1515..1584 -
1691480967.1716135-CDS-H-paniculata_contig2399:1514..15841691480967.1716135-CDS-H-paniculata_contig2399:1514..1584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2399 1515..1584 -
1622929686.3802192-CDS-H-paniculata_contig2399:2260..23331622929686.3802192-CDS-H-paniculata_contig2399:2260..2333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2399 2261..2333 -
1691480967.182065-CDS-H-paniculata_contig2399:2260..23331691480967.182065-CDS-H-paniculata_contig2399:2260..2333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2399 2261..2333 -
1622929686.4136863-CDS-H-paniculata_contig2399:3299..35341622929686.4136863-CDS-H-paniculata_contig2399:3299..3534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2399 3300..3534 -
1691480967.191708-CDS-H-paniculata_contig2399:3299..35341691480967.191708-CDS-H-paniculata_contig2399:3299..3534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2399 3300..3534 -
1622929686.4349434-CDS-H-paniculata_contig2399:4003..41301622929686.4349434-CDS-H-paniculata_contig2399:4003..4130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2399 4004..4130 -
1691480967.2082171-CDS-H-paniculata_contig2399:4003..41301691480967.2082171-CDS-H-paniculata_contig2399:4003..4130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2399 4004..4130 -
1622929686.4587216-CDS-H-paniculata_contig2399:5226..53661622929686.4587216-CDS-H-paniculata_contig2399:5226..5366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2399 5227..5366 -
1691480967.228072-CDS-H-paniculata_contig2399:5226..53661691480967.228072-CDS-H-paniculata_contig2399:5226..5366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2399 5227..5366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2399.6488.1prot_H-paniculata_contig2399.6488.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2399 394..5366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2399.6488.1

>prot_H-paniculata_contig2399.6488.1 ID=prot_H-paniculata_contig2399.6488.1|Name=mRNA_H-paniculata_contig2399.6488.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=301bp
ETFVVTDFDRETVLDAEVYLSMRSGEYWQNNPTANRLFMVLDNVSAPLEG
DVELEVNYQPHFNTITKTGEANFSKVPHAVAELIDNSIQATDSNAGKRLV
EVEVEIGTGKRSSFLVVRDNGRGMNAKGLKDFATYFLTQENRGVSGPQVS
SYSGYVSLTPGGGGGGGGRSRAGLRRASAGGGSLGAKKGKICSGFISKFG
VGALQAGFYIGSCLTVVTKTALQPQVYEFVMDEAEYERRAMNNTAMFKDK
IRLRNAGKKSEDPEAERVGPATVLLDRLREQEKEEDHFTYIVLTLRDKHV
E
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mRNA from alignment at H-paniculata_contig2399:394..5366-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2399.6488.1 ID=mRNA_H-paniculata_contig2399.6488.1|Name=mRNA_H-paniculata_contig2399.6488.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4973bp|location=Sequence derived from alignment at H-paniculata_contig2399:394..5366- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAACGTTCGTAGTAACAGACTTCGACCGAGAAACCGTTCTCGATGCGGA GGTGTACCTATCAATGCGGTCGGGAGAATACTGGCAAAACAACCCCACAG CGAACCGCCTGTTCATGGTGCTCGACAACGTCTCCGCGCCGTGAGTCGAT ATGGAACGTGTGAGATTCACATGGAGTATGGCAGAGTTCGGGTCTAACAG CACAGTGCAGTGCAGTAGTACATCAGTGCCGAACACGCTGTGGTGTTGGT ACACCCACCCCATCGCGGTACAGTGTTGATCCTGATGAACATTTATTACA GGATTCGATCGTCAGGCGTTTTCGGCTTAAAGGATGCCGTAGCAAGCTGA AAGATGGACCGCCTGCTGCCACACTTTCTCAGCCAAGTCTGGTTTCAAAT GGCGGCTATTTTGAGCGTGCAGGAGAAAATTTTGCCCAACGTACTGTCCT TTCTAAAACGATCCTCGTGTTCAGCCACATGGTCAAAACAGCTCCTCCTT TGGTGAAATGACAGGGCACATCCCACACTACAAGATGAAAAATACATGAA CTATGGAGCACACCATTCCGCGAACGATATACCCATGCGATCAAACAGTA CGAAGCAGGAAAAAAGAGCCAGCACATAGTATTTCCAAGATGTTTTAAGC AATCAGATTTTTCCGGATTTTACATGCGTATTTGCGTATCATTGCAGTTC TTTGTGCAAACGTTGACCTTCGCAGATGATGCAGGTGGCATCGTGCTCTA GGTGTGGAGTCATCAATTTCCTTGTGCCAATGCCCCCCCCTCCCATCCCC GCCTCCCTCCTCCAAATCAAAATCTCTGTTGAGCATCCGACTTGTCTTTG TTTTGAAGGCCTAACTCCAGATGTTAAGATGCCATCACGTTTCACCATAC TCGAGTAGAAAATACAGTAAACTAAAGGTCATTGTAAATTTGTCCTGGTG TGATGGCCCTGCTGGCGGCATCAAGAGTCTGCAGTTTAGAGACCTCGAGA GAGAAGAGTCATTGTTTTTGTAGTCTGCGAACGAGAGATATACTGTTTCT CAACGTCTACCCGTTGCATGTTCCTGGGGGACACCCGATGGGTCACCTGT CTTGTCTGTCTGTATCAGCAGTTAAGCATGTTCTTTTGTTGTTGAGGATG CTTTTTGATTTGAAAAAAAAAACATACGGAGATCAGTCTGTTCTTGTATT TGTCCGTGTGTTCTCTTCGCTTTGTTCGTGCCAAAGGCTGGAAGGGGACG TAGAGTTGGAAGTGAACTACCAGCCGCATTTCAACACCATCACCAAGACA GGAGAGGCAAATTTCAGCAAGGTGCCCCATGCTGTGGCGGAGCTTATCGA TAACTCTATTCAGGTAAGACTTGGGCCAATATCACCAAGGCAAGGAAGTC GGGAGGAAGGGGGGCGGAAACCGTGGGGGCGGGAGAGAGTAGCGGCACTG TGTCTGTTCTCCTTAATCTTTGGAGATCGAGTAGTAGGTCCTGTGCCTGA TGAATGCGTGAGTGGAGCATTCGGTTCAACCTTGTCTGAAGAGCGTCTGT TCAGAGAAACTGATACATACACCGGTGCGGTTTGGCCTTGGACGCAAGAA GCTTGGCTGTACAATTACCACAGACCCTCTCGGAGGAGTCGTGAACCCAC ACAGACTTGGGGAACGTCGGAACCGGTGTCTGTCGTTGCAGCTTGGGCTT GTGTGATGTTTGCTGGTGTCCGGAATACAATGCAGCACAATCTCTACCCG TCTGTCCTTCTCCCTCTCTTGTTCCTGGTGTTGAACATCCATCACCCCCT TCATCCCCTTCCGTCCCCTGTCTTTTTCACAGGCAACTGACTCCAATGCA GGGAAGCGCCTCGTAGAGGTGGAGGTGGAAATCGGCACCGGCAAGAGAAG TAGCTTTCTCGTGGTGCGGGACAACGGCCGTGGGATGAACGCCAAAGGCT TGAAGGACTTTGCCACCTATTTCCTTACCCAAGAGAATAGGGGTGTTTCT GGACCGCAGGTTAGCAGTTACAGTGGATACGTCAGTTTGACGCCCGGGGG GGGGGGGGGGGGGGGGGGTATATGGCAAGCCAGCAAGGGCTGCCTTCATT CGCGATTCGCCTTGCTAGAGCTACCATAATAATTCTATGGAAATTGTGTT CATGGTATTTGTGTAGGTCTTGCCAAGCCGAGTTGGTCTGCCTTGAATAA CGCTGGTTGTGCAGTCCGGGTACCCGATGTCTGCACCAAAAACAGGGGCT GTCGGCTTTCATTAAGACACCCATGGTGCTGAAAACGCTTTCGCCAGTAC ATTATTTTGCTGTGAAAAGCTGTATGTACGGTGTAGACGCAAAAAAGCCG GTGGAGATATAACGGGTATATTGGTAGGGTATGATAGCCACAATTTTCCA AAAGACGTCTTTCATCCTCCACCGCCGCCGCTGCCGCCGCCGCCGCGACG CAGATTCGTTGTTCATTTTCCTGATCTTTCCTTAGTACAGTTCATTCGTG GTGAAGCTTTCGTACGCCTGTGCATCAAGTGCATCAATTGAGGTCCTTTT GGCTCCTGTACTGCTTCTAAACGTTCGTATAGAAATTACGAAAGAGCGAG GAAAGGATGGCTCGCTCCTGTCTTTTTTAATTTATTTTACACAGTTTGGA CCACAAGTCTTCTACTTGCTGTGTATAATTTCCAGGAATTTGTCTACTTG ACCAAAGGAAAATGGAGTGAATTTAATACATACGTTACGGGACCCACGCA TATCAAAAGTTGGAGGTCAGGCTCAAACTGTGTTTTCCTGTTCGTTTTTT CGAAGCAAGAAAAACAGTCCTTTTTCGCGTCTTTGTACAGTTGCCGCCTG CTCCAGACTCAGCTGTTTCAAGTTCCCAAAGTCTCACGGCTTGTGTTCGT AAGAATCGTATTTCTTATGATAAGGTGGGTAGTGTAGCGCACAGGAGTGT GTGATCAATGAAGTAACACATTTATGTATCACACGGCGCACGTGGAACGG GGCTGCCACAGGCCCCGACTGTCGATGACGGAGGCAGGTCGCGCGCTGGC TTGAGGAGGGCAAGCGCCGGCGGAGGCAGCTTAGGCGCGAAAAAAGGGAA GATTTGGTGAGCTTTTGGAAAGAACTGTCCGCAGTATGCTTCCGTGGAAA CGGGGGCGGGCGGTGGGGGCGAGGCGTACTGATAGAGGCGTACTGATGTT TTCGATGCTGTCATTGTTGAACCATTGACCATTCGTTCTCAAAAGCTAGA AGCGTAAGAAGACAACAGATATTTGATTCATTGTTTTATGCGATACAGAA TTGTGACAGGCCAGGAAAGAGAGGATGAGAAAGGGATCACTTTGTTGCCT GAGCGTGGAAGCACTGTCACTCCGGGTGATTTTTCTCTAGAAATAAATTG TCTGCACGGTCAGTCGACGCAGGTTAATAAATTGGTGAAAATGTTAATAG AGCCAACCGTGTGGTTTTATTGAAAATCTGATCTGAAAAAGTGCGGGGAA ATGTTAGTAAAACCGGTGAAAAATGAAGTCTATTCCAAAAATCTTCCTGT GGGGGGCCCCTGCGCGGGGGGTATTTTCTCTTGAGGCCTCCGGTACGATT TTTACTGTAGCTTACTGCCCTGGCCATGAGTGTGTGCTACGAAATCCCAG GATACTAGGTATGTGCAATGGAAGTGATAAAGTGGCTTGCCTGGTGCGGT TGTATTTATTGGTAGGTCATGCGATGTCTTCCAACCCCCTCCCTCCCCCC TCGATCTCTTAATTGTCTGGACTTGCCTTCAGCTCTGGGTTCATTTCCAA GTTTGGGGTGGGCGCACTCCAGGCGGGGTTCTATATTGGATCGTGTCTTA CGGTAAGATGTCCCCCATTATATACCACCTTCATCTCGGATGTTGGATGC GGGTTCAAGTGTTGTCACTGTCTCTTATCCGTTTTGACGGAGCAGTTGTC GAATTCATTTGTTTGGGGCTCTCACCCTTTTGTTGATGCTTTTACTTTCA TGTATGTCATCATTAGACGGCTGTGTCGACTTCCACAAGTGGAAGTATTT TTCATTTGTTCCTTAGACACCTATCCTGTCATATATGCAGGTCGTGACGA AGACTGCACTTCAGCCGCAAGTGTACGAGTTCGTCATGGACGAGGCGGAG TACGAGCGGCGCGCGATGAACAACACGGCGATGTTCAAGGACAAGATCAG ACTGAGAAACGCGGGAAAAAAATCTGAGGTACTGACTGTCGCGGATACTA CAGGTGCTGTTCATGATCGATCAACAACTTTTGATTTTTTTCACTCAACC ATCGAAGGAATTCTCCTTGATCCTTTCGCTTCGGAATGCTTCAACCTGGC ACCCGCACGCACTCGTGAATGCCCATCATAGAGTACACAAAATAACGAAA GAGCGATTGACCGTTGGGCATCGCTCTAATCGGAACAAAGTTCCGTCCTC CCGAGGACACTGGTCAACGATCTAACATGAGAATGCCCCCCCCCCCTCCC TGATGACAAGAGTCCATCCTGCTCGATTCGAGGTTTCGTGTACAACTTTC TGCGCATCCTCGTGTTGAACCCGAGGCACACCTATTGTAACCTGCGCTTT GATTGAAAGTTCTCGCAATACACGGTTGAGAAATGAATACAGCATGTTGT GGTCATATATTACTCTTGAAAAAAAACGCCTCTTCCCATTGAAGATCAAC GGGGGCTGGGGGGAGGGTGATCTGAGTTGCACTTTCATGCTACTCGAAGA ACATTTTCGTTATGCTGAAACGGTTCCTGTTCCTCCCCACGTTTCTTCAA ACCCCAACGGTCATGCAACATTTTTCTTGTCTGCGGCTGAACGGCTCTAA TAGGACCCGGAGGCGGAGAGAGTGGGCCCGGCTACAGTGCTGCTAGACAG ACTCAGAGAGCAGGAAAAAGAAGAAGACCACTTCACGTACATTGTACTCA CTCTCAGGGACAAACACGTTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2399:394..5366-

>mRNA_H-paniculata_contig2399.6488.1 ID=mRNA_H-paniculata_contig2399.6488.1|Name=mRNA_H-paniculata_contig2399.6488.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1806bp|location=Sequence derived from alignment at H-paniculata_contig2399:394..5366- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAACGTTCGTAGTAACAGACTTCGACCGAGAAACCGTTCTCGATGCGGA
GGTGTACCTATCAATGCGGTCGGGAGAATACTGGCAAAACAACCCCACAG
CGAACCGCCTGTTCATGGTGCTCGACAACGTCTCCGCGCCGAAACGTTCG
TAGTAACAGACTTCGACCGAGAAACCGTTCTCGATGCGGAGGTGTACCTA
TCAATGCGGTCGGGAGAATACTGGCAAAACAACCCCACAGCGAACCGCCT
GTTCATGGTGCTCGACAACGTCTCCGCGCCGCTGGAAGGGGACGTAGAGT
TGGAAGTGAACTACCAGCCGCATTTCAACACCATCACCAAGACAGGAGAG
GCAAATTTCAGCAAGGTGCCCCATGCTGTGGCGGAGCTTATCGATAACTC
TATTCAGGCTGGAAGGGGACGTAGAGTTGGAAGTGAACTACCAGCCGCAT
TTCAACACCATCACCAAGACAGGAGAGGCAAATTTCAGCAAGGTGCCCCA
TGCTGTGGCGGAGCTTATCGATAACTCTATTCAGGCAACTGACTCCAATG
CAGGGAAGCGCCTCGTAGAGGTGGAGGTGGAAATCGGCACCGGCAAGAGA
AGTAGCTTTCTCGTGGTGCGGGACAACGGCCGTGGGATGAACGCCAAAGG
CTTGAAGGACTTTGCCACCTATTTCCTTACCCAAGAGAATAGGGGTGTTT
CTGGACCGCAGGTTAGCAGTTACAGTGGATACGTCAGTTTGACGCCCGGG
GGGGGGGGGGGGGGGGGGGGCAACTGACTCCAATGCAGGGAAGCGCCTCG
TAGAGGTGGAGGTGGAAATCGGCACCGGCAAGAGAAGTAGCTTTCTCGTG
GTGCGGGACAACGGCCGTGGGATGAACGCCAAAGGCTTGAAGGACTTTGC
CACCTATTTCCTTACCCAAGAGAATAGGGGTGTTTCTGGACCGCAGGTTA
GCAGTTACAGTGGATACGTCAGTTTGACGCCCGGGGGGGGGGGGGGGGGG
GGGGGCAGGTCGCGCGCTGGCTTGAGGAGGGCAAGCGCCGGCGGAGGCAG
CTTAGGCGCGAAAAAAGGGAAGATTTGGCAGGTCGCGCGCTGGCTTGAGG
AGGGCAAGCGCCGGCGGAGGCAGCTTAGGCGCGAAAAAAGGGAAGATTTG
CTCTGGGTTCATTTCCAAGTTTGGGGTGGGCGCACTCCAGGCGGGGTTCT
ATATTGGATCGTGTCTTACGCTCTGGGTTCATTTCCAAGTTTGGGGTGGG
CGCACTCCAGGCGGGGTTCTATATTGGATCGTGTCTTACGGTCGTGACGA
AGACTGCACTTCAGCCGCAAGTGTACGAGTTCGTCATGGACGAGGCGGAG
TACGAGCGGCGCGCGATGAACAACACGGCGATGTTCAAGGACAAGATCAG
ACTGAGAAACGCGGGAAAAAAATCTGAGGTCGTGACGAAGACTGCACTTC
AGCCGCAAGTGTACGAGTTCGTCATGGACGAGGCGGAGTACGAGCGGCGC
GCGATGAACAACACGGCGATGTTCAAGGACAAGATCAGACTGAGAAACGC
GGGAAAAAAATCTGAGGACCCGGAGGCGGAGAGAGTGGGCCCGGCTACAG
TGCTGCTAGACAGACTCAGAGAGCAGGAAAAAGAAGAAGACCACTTCACG
TACATTGTACTCACTCTCAGGGACAAACACGTTGAGGACCCGGAGGCGGA
GAGAGTGGGCCCGGCTACAGTGCTGCTAGACAGACTCAGAGAGCAGGAAA
AAGAAGAAGACCACTTCACGTACATTGTACTCACTCTCAGGGACAAACAC
GTTGAG
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