mRNA_H-paniculata_contig2395.6480.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2395.6480.1
Unique NamemRNA_H-paniculata_contig2395.6480.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2395.6480.1 vs. uniprot
Match: D8LIS9_ECTSI (Branched chain amino acid aminotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIS9_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 7.800e-21
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    4 PIVVDADLLRANPEGVLREMSEMLGIPYCAAQLSWPKGTKPYDGCWGYLWY 156
            PIV+DA+LLRANPEGVLRE+SEM GIPY   QLSW  G KPYDGCW Y+WY
Sbjct:  190 PIVIDAELLRANPEGVLREVSEMAGIPYAPEQLSWEAGPKPYDGCWAYVWY 240          
BLAST of mRNA_H-paniculata_contig2395.6480.1 vs. uniprot
Match: A0A7L7L719_9BACT (Uncharacterized protein n=1 Tax=Adhaeribacter radiodurans TaxID=2745197 RepID=A0A7L7L719_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 8.360e-11
Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    4 PIVVDADLLRANPEGVLREMSEMLGIPYCAAQLSWPKGTKPYDGCWGYLWYVR 162
            P+V+D + LR NPE VL+++ + LG+P+  A L+WP G +  DGCW   WY +
Sbjct:  127 PLVLDGNELRKNPEHVLQQLCDGLGLPFNQAMLNWPAGPRAEDGCWAPFWYAK 179          
BLAST of mRNA_H-paniculata_contig2395.6480.1 vs. uniprot
Match: UPI001BB77480 (Sulfotransferase family protein n=1 Tax=Cryomorphaceae bacterium TaxID=1898111 RepID=UPI001BB77480)

HSP 1 Score: 62.4 bits (150), Expect = 2.890e-10
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 1
Query:    4 PIVVDADLLRANPEGVLREMSEMLGIPYCAAQLSWPKGTKPYDGCWGYLWY 156
            P+V+D+  L  NPE +L ++ E LGIPY A  L WP G +P DG W   WY
Sbjct:  145 PLVIDSRELLVNPEAILEQVCERLGIPYTARMLQWPAGPRPEDGAWAPHWY 195          
BLAST of mRNA_H-paniculata_contig2395.6480.1 vs. uniprot
Match: A0A4V3AQX6_9RHOB (HAD family hydrolase n=1 Tax=Antarcticimicrobium luteum TaxID=2547397 RepID=A0A4V3AQX6_9RHOB)

HSP 1 Score: 61.2 bits (147), Expect = 7.560e-10
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    4 PIVVDADLLRANPEGVLREMSEMLGIPYCAAQLSWPKGTKPYDGCWGYLWY 156
            P+VVD+  +RA+PEG+LR++   +G+ +  A LSWP G KP DG W   WY
Sbjct:  145 PVVVDSADIRADPEGMLRQLCARIGLDWDPAMLSWPAGPKPEDGVWAAHWY 195          
BLAST of mRNA_H-paniculata_contig2395.6480.1 vs. uniprot
Match: A0A3C1KSR7_9GAMM (Sulfotransferase family protein n=6 Tax=Halieaceae TaxID=1706372 RepID=A0A3C1KSR7_9GAMM)

HSP 1 Score: 61.2 bits (147), Expect = 8.610e-10
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1
Query:    4 PIVVDADLLRANPEGVLREMSEMLGIPYCAAQLSWPKGTKPYDGCWGYLWYV 159
            P V+D+    A+PEGVLR + E +GIP+ AA LSWP G++  DG W   WY 
Sbjct:  154 PPVIDSAATLADPEGVLRALCERVGIPFSAAMLSWPAGSRDSDGVWAPHWYA 205          
BLAST of mRNA_H-paniculata_contig2395.6480.1 vs. uniprot
Match: A0A2P6V5B2_9CHLO (Aminotransferase class IV n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V5B2_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 2.600e-9
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    4 PIVVDADLLRANPEGVLREMSEMLGIPYCAAQLSWPKGTKPYDGCWGYLWY 156
            P+V+  DL+R +PEG+LR +   L +P+  A LSWP G+KPYDG W   WY
Sbjct:  162 PVVLSDDLVR-DPEGMLRALCAALELPFDPAMLSWPAGSKPYDGVWAPWWY 211          
BLAST of mRNA_H-paniculata_contig2395.6480.1 vs. uniprot
Match: UPI001FDEF5C7 (hypothetical protein n=1 Tax=Lewinella persica TaxID=70998 RepID=UPI001FDEF5C7)

HSP 1 Score: 58.9 bits (141), Expect = 5.790e-9
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 1
Query:   10 VVDADLLRANPEGVLREMSEMLGIPYCAAQLSWPKGTKPYDGCWGYLWYVR 162
            VVDA LL  NPE VL+++ + LG+ +  A LSWP G +P DG W   WY  
Sbjct:  156 VVDARLLLMNPERVLQQLCDRLGLTFTKAMLSWPAGPRPEDGTWAAHWYTN 206          
BLAST of mRNA_H-paniculata_contig2395.6480.1 vs. uniprot
Match: A0A7M3T711_9RHOB (HAD family hydrolase n=2 Tax=Pikeienuella piscinae TaxID=2748098 RepID=A0A7M3T711_9RHOB)

HSP 1 Score: 58.5 bits (140), Expect = 7.670e-9
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 1
Query:    4 PIVVDADLLRANPEGVLREMSEMLGIPYCAAQLSWPKGTKPYDGCWGYLWY 156
            P V++A+ +RANPEG+LR +   L IP+ A  LSWP G +  DG W   WY
Sbjct:  146 PPVIEAEDVRANPEGMLRALCAALDIPFDARMLSWPSGPRASDGVWAAHWY 196          
BLAST of mRNA_H-paniculata_contig2395.6480.1 vs. uniprot
Match: A0A3E1EFE4_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A3E1EFE4_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 1.390e-8
Identity = 26/52 (50.00%), Postives = 32/52 (61.54%), Query Frame = 1
Query:    1 RPIVVDADLLRANPEGVLREMSEMLGIPYCAAQLSWPKGTKPYDGCWGYLWY 156
            RP V+D+  L  NPE VLRE+ E +GIP+  A L W  G +P DG W   WY
Sbjct:  129 RPEVIDSRDLLLNPEAVLRELCERVGIPFDPAMLQWKAGPRPEDGPWARDWY 180          
BLAST of mRNA_H-paniculata_contig2395.6480.1 vs. uniprot
Match: A0A5C7FTB1_9BACT (Uncharacterized protein n=2 Tax=Lewinella aurantiaca TaxID=2602767 RepID=A0A5C7FTB1_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.760e-8
Identity = 25/49 (51.02%), Postives = 30/49 (61.22%), Query Frame = 1
Query:   10 VVDADLLRANPEGVLREMSEMLGIPYCAAQLSWPKGTKPYDGCWGYLWY 156
            VVDA LL  NPE VL ++ + LGIP+    LSW  G +P DG W   WY
Sbjct:  131 VVDARLLLLNPESVLSQLCDRLGIPFTPQMLSWEPGARPEDGIWAAHWY 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2395.6480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIS9_ECTSI7.800e-2176.47Branched chain amino acid aminotransferase n=2 Tax... [more]
A0A7L7L719_9BACT8.360e-1145.28Uncharacterized protein n=1 Tax=Adhaeribacter radi... [more]
UPI001BB774802.890e-1049.02Sulfotransferase family protein n=1 Tax=Cryomorpha... [more]
A0A4V3AQX6_9RHOB7.560e-1049.02HAD family hydrolase n=1 Tax=Antarcticimicrobium l... [more]
A0A3C1KSR7_9GAMM8.610e-1050.00Sulfotransferase family protein n=6 Tax=Halieaceae... [more]
A0A2P6V5B2_9CHLO2.600e-950.98Aminotransferase class IV n=1 Tax=Micractinium con... [more]
UPI001FDEF5C75.790e-949.02hypothetical protein n=1 Tax=Lewinella persica Tax... [more]
A0A7M3T711_9RHOB7.670e-949.02HAD family hydrolase n=2 Tax=Pikeienuella piscinae... [more]
A0A3E1EFE4_9BACT1.390e-850.00Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A5C7FTB1_9BACT1.760e-851.02Uncharacterized protein n=2 Tax=Lewinella aurantia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2395contigH-paniculata_contig2395:197..358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue5.2e-17
Seed eggNOG ortholog2880.D8LIS9
KEGG rclassRC00006,RC00036
KEGG koko:K00826
KEGG ReactionR01090,R01214,R02199,R10991
KEGG Pathwayko00270,ko00280,ko00290,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00270,map00280,map00290,map00770,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00019,M00036,M00119,M00570
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.branched-chain-amino-acid transaminase activity
EggNOG OGsCOG0115@1,KOG0975@2759
Ec32 ortholog descriptionbranched chain amino acid aminotransferase
Ec32 orthologEc-20_001390.1
EC2.6.1.42
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929685.306992-CDS-H-paniculata_contig2395:196..3581622929685.306992-CDS-H-paniculata_contig2395:196..358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2395 197..358 -
1691480966.7055821-CDS-H-paniculata_contig2395:196..3581691480966.7055821-CDS-H-paniculata_contig2395:196..358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2395 197..358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2395.6480.1prot_H-paniculata_contig2395.6480.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2395 197..358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2395.6480.1

>prot_H-paniculata_contig2395.6480.1 ID=prot_H-paniculata_contig2395.6480.1|Name=mRNA_H-paniculata_contig2395.6480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
RPIVVDADLLRANPEGVLREMSEMLGIPYCAAQLSWPKGTKPYDGCWGYL
WYVR
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mRNA from alignment at H-paniculata_contig2395:197..358-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2395.6480.1 ID=mRNA_H-paniculata_contig2395.6480.1|Name=mRNA_H-paniculata_contig2395.6480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at H-paniculata_contig2395:197..358- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACCTATTGTCGTGGACGCTGATCTCCTTCGAGCTAACCCGGAAGGGGT GCTGAGGGAAATGTCGGAAATGCTGGGTATACCGTACTGCGCGGCGCAGC TATCCTGGCCCAAGGGAACCAAGCCTTACGATGGCTGCTGGGGATACCTG TGGTACGTGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2395:197..358-

>mRNA_H-paniculata_contig2395.6480.1 ID=mRNA_H-paniculata_contig2395.6480.1|Name=mRNA_H-paniculata_contig2395.6480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig2395:197..358- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACCTATTGTCGTGGACGCTGATCTCCTTCGAGCTAACCCGGAAGGGGT
GCTGAGGGAAATGTCGGAAATGCTGGGTATACCGTACTGCGCGGCGCAGC
TATCCTGGCCCAAGGGAACCAAGCCTTACGATGGCTGCTGGGGATACCTG
TGGTACGTGAGGAGACCTATTGTCGTGGACGCTGATCTCCTTCGAGCTAA
CCCGGAAGGGGTGCTGAGGGAAATGTCGGAAATGCTGGGTATACCGTACT
GCGCGGCGCAGCTATCCTGGCCCAAGGGAACCAAGCCTTACGATGGCTGC
TGGGGATACCTGTGGTACGTGAGG
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