mRNA_H-paniculata_contig23920.6470.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: D7FJT5_ECTSI (Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT5_ECTSI) HSP 1 Score: 105 bits (262), Expect = 4.420e-25 Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 1
Query: 1 REELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQRASPQ 174
REELFAY INWQ+VE IIQ+KMRPWIVKKIIEYLGEEEKTLTEF+LTKLGQRA PQ
Sbjct: 707 REELFAYEINWQMVEQHNIIQSKMRPWIVKKIIEYLGEEEKTLTEFVLTKLGQRAKPQ 764
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: A0A7S2CNP4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CNP4_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 5.770e-16 Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1
Query: 10 LFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQRASP 171
LF++ I+W V++ I+ MRPWIVKKI+EYLGEEEKTL +FI+TKL Q ++P
Sbjct: 53 LFSFPIHWDVLDAHRIVATNMRPWIVKKIVEYLGEEEKTLIDFIITKLDQHSNP 106
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: K3WIU2_GLOUD (PWI domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIU2_GLOUD) HSP 1 Score: 78.2 bits (191), Expect = 1.770e-15 Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 7 ELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQRASPQ 174
ELF+Y I+W V+ I+ AKM PW+ KKIIEYLGEEE TL EFIL KL QRA P+
Sbjct: 464 ELFSYPIDWMAVDKHKIVAAKMAPWVAKKIIEYLGEEEPTLIEFILKKLDQRAKPE 519
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: A0A7S2XWQ2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWQ2_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 3.000e-14 Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 1
Query: 1 REELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQRASPQ 174
+ LFAY +NW +V ++ +K+RPW+ KKI EYLGEEE+TL +FI+++L +RA PQ
Sbjct: 150 KRALFAYKVNWDLVHKHDVVGSKLRPWVSKKITEYLGEEERTLIDFIVSQLMERAHPQ 207
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: UPI0009E27CDA (RNA-binding protein 25-like isoform X2 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E27CDA) HSP 1 Score: 73.9 bits (180), Expect = 5.520e-14 Identity = 32/57 (56.14%), Postives = 47/57 (82.46%), Query Frame = 1
Query: 1 REELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQRASP 171
+EELFAY ++W +V+ QG++ ++RPW+ KKIIEY+GEEE TLT+FI +K+ R+SP
Sbjct: 661 KEELFAYSLDWSIVD-QGLVDRRIRPWVNKKIIEYIGEEELTLTDFICSKVIARSSP 716
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: A0A835Z4I4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I4_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 5.530e-14 Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1
Query: 1 REELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQRASPQ 174
++ LFAY ++W VV + GI+ KMRPW+V+KI EYLGEEE TL +F+ KL RA PQ
Sbjct: 670 KDALFAYPLDWGVVTSHGIVANKMRPWVVRKIREYLGEEEPTLIDFVCAKLEARAPPQ 727
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: A0A2P6N0A1_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N0A1_9EUKA) HSP 1 Score: 73.6 bits (179), Expect = 7.520e-14 Identity = 28/57 (49.12%), Postives = 44/57 (77.19%), Query Frame = 1
Query: 1 REELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQRASP 171
+E++FAY I+W+ +E + II+ K+RPW+ KK +EYLG+EEKTL +I+ ++ QR P
Sbjct: 519 KEQVFAYPIDWETIEKENIIENKLRPWVTKKFVEYLGQEEKTLIAYIVNQIKQRTDP 575
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: A0A6B2L9W9_9EUKA (PWI domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L9W9_9EUKA) HSP 1 Score: 72.8 bits (177), Expect = 8.930e-14 Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1
Query: 1 REELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQRASPQ 174
+E LFAY+I+W +VE + I++ KMRPW+ KKI+E L EEE TL E+I KL +SPQ
Sbjct: 229 KEALFAYVIDWAIVEEKQIVEQKMRPWVTKKIVELLDEEEPTLIEYICKKLCDHSSPQ 286
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: A0A7S3ZNA8_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNA8_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.910e-13 Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 4 EELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQRASPQ 174
++LF ++W VE G++QAK+RPW+ KKI EYLGEEE TL +I + LG+RA P+
Sbjct: 425 DQLFKATVDWAAVERAGVVQAKLRPWVAKKIAEYLGEEEPTLINYICSCLGRRAKPE 481
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: A0A7S0I375_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I375_9EUKA) HSP 1 Score: 67.4 bits (163), Expect = 3.630e-13 Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1
Query: 1 REELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQR 162
R+EL+A + W VE G++ AK+RPW+ KK+ E +GEEE TL EF++ KLG+R
Sbjct: 13 RDELYATPVGWDAVERGGLLAAKIRPWLGKKVAELMGEEEDTLVEFVVGKLGER 66 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig23920.6470.1 >prot_H-paniculata_contig23920.6470.1 ID=prot_H-paniculata_contig23920.6470.1|Name=mRNA_H-paniculata_contig23920.6470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp REELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKback to top mRNA from alignment at H-paniculata_contig23920:3092..3265- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig23920.6470.1 ID=mRNA_H-paniculata_contig23920.6470.1|Name=mRNA_H-paniculata_contig23920.6470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig23920:3092..3265- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig23920:3092..3265- >mRNA_H-paniculata_contig23920.6470.1 ID=mRNA_H-paniculata_contig23920.6470.1|Name=mRNA_H-paniculata_contig23920.6470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig23920:3092..3265- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |