mRNA_H-paniculata_contig23920.6470.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23920.6470.1
Unique NamemRNA_H-paniculata_contig23920.6470.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: D7FJT5_ECTSI (Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT5_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 4.420e-25
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 1
Query:    1 REELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQRASPQ 174
            REELFAY INWQ+VE   IIQ+KMRPWIVKKIIEYLGEEEKTLTEF+LTKLGQRA PQ
Sbjct:  707 REELFAYEINWQMVEQHNIIQSKMRPWIVKKIIEYLGEEEKTLTEFVLTKLGQRAKPQ 764          
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: A0A7S2CNP4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CNP4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.770e-16
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1
Query:   10 LFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQRASP 171
            LF++ I+W V++   I+   MRPWIVKKI+EYLGEEEKTL +FI+TKL Q ++P
Sbjct:   53 LFSFPIHWDVLDAHRIVATNMRPWIVKKIVEYLGEEEKTLIDFIITKLDQHSNP 106          
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: K3WIU2_GLOUD (PWI domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIU2_GLOUD)

HSP 1 Score: 78.2 bits (191), Expect = 1.770e-15
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    7 ELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQRASPQ 174
            ELF+Y I+W  V+   I+ AKM PW+ KKIIEYLGEEE TL EFIL KL QRA P+
Sbjct:  464 ELFSYPIDWMAVDKHKIVAAKMAPWVAKKIIEYLGEEEPTLIEFILKKLDQRAKPE 519          
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: A0A7S2XWQ2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWQ2_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.000e-14
Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 REELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQRASPQ 174
            +  LFAY +NW +V    ++ +K+RPW+ KKI EYLGEEE+TL +FI+++L +RA PQ
Sbjct:  150 KRALFAYKVNWDLVHKHDVVGSKLRPWVSKKITEYLGEEERTLIDFIVSQLMERAHPQ 207          
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: UPI0009E27CDA (RNA-binding protein 25-like isoform X2 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E27CDA)

HSP 1 Score: 73.9 bits (180), Expect = 5.520e-14
Identity = 32/57 (56.14%), Postives = 47/57 (82.46%), Query Frame = 1
Query:    1 REELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQRASP 171
            +EELFAY ++W +V+ QG++  ++RPW+ KKIIEY+GEEE TLT+FI +K+  R+SP
Sbjct:  661 KEELFAYSLDWSIVD-QGLVDRRIRPWVNKKIIEYIGEEELTLTDFICSKVIARSSP 716          
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: A0A835Z4I4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.530e-14
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    1 REELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQRASPQ 174
            ++ LFAY ++W VV + GI+  KMRPW+V+KI EYLGEEE TL +F+  KL  RA PQ
Sbjct:  670 KDALFAYPLDWGVVTSHGIVANKMRPWVVRKIREYLGEEEPTLIDFVCAKLEARAPPQ 727          
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: A0A2P6N0A1_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N0A1_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 7.520e-14
Identity = 28/57 (49.12%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    1 REELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQRASP 171
            +E++FAY I+W+ +E + II+ K+RPW+ KK +EYLG+EEKTL  +I+ ++ QR  P
Sbjct:  519 KEQVFAYPIDWETIEKENIIENKLRPWVTKKFVEYLGQEEKTLIAYIVNQIKQRTDP 575          
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: A0A6B2L9W9_9EUKA (PWI domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L9W9_9EUKA)

HSP 1 Score: 72.8 bits (177), Expect = 8.930e-14
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    1 REELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQRASPQ 174
            +E LFAY+I+W +VE + I++ KMRPW+ KKI+E L EEE TL E+I  KL   +SPQ
Sbjct:  229 KEALFAYVIDWAIVEEKQIVEQKMRPWVTKKIVELLDEEEPTLIEYICKKLCDHSSPQ 286          
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: A0A7S3ZNA8_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNA8_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.910e-13
Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    4 EELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQRASPQ 174
            ++LF   ++W  VE  G++QAK+RPW+ KKI EYLGEEE TL  +I + LG+RA P+
Sbjct:  425 DQLFKATVDWAAVERAGVVQAKLRPWVAKKIAEYLGEEEPTLINYICSCLGRRAKPE 481          
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Match: A0A7S0I375_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I375_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 3.630e-13
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1
Query:    1 REELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTKLGQR 162
            R+EL+A  + W  VE  G++ AK+RPW+ KK+ E +GEEE TL EF++ KLG+R
Sbjct:   13 RDELYATPVGWDAVERGGLLAAKIRPWLGKKVAELMGEEEDTLVEFVVGKLGER 66          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23920.6470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJT5_ECTSI4.420e-2586.21Splicing factor PWI domain-containing protein / RN... [more]
A0A7S2CNP4_9STRA5.770e-1659.26Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
K3WIU2_GLOUD1.770e-1564.29PWI domain-containing protein n=1 Tax=Globisporang... [more]
A0A7S2XWQ2_9STRA3.000e-1451.72Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI0009E27CDA5.520e-1456.14RNA-binding protein 25-like isoform X2 n=2 Tax=Orb... [more]
A0A835Z4I4_9STRA5.530e-1456.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2P6N0A1_9EUKA7.520e-1449.12Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A6B2L9W9_9EUKA8.930e-1455.17PWI domain-containing protein n=1 Tax=Arcella inte... [more]
A0A7S3ZNA8_9STRA1.910e-1352.63Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S0I375_9EUKA3.630e-1351.85Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23920contigH-paniculata_contig23920:3092..3265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue4.9e-21
Seed eggNOG ortholog2880.D7FJT5
Preferred nameSNU71
KEGG koko:K12822
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005685,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0010941,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0030532,GO:0031323,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1903311,GO:1990904
EggNOG free text desc.mRNA processing
EggNOG OGsKOG2253@1,KOG2253@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929683.7202501-CDS-H-paniculata_contig23920:3091..32651622929683.7202501-CDS-H-paniculata_contig23920:3091..3265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23920 3092..3265 -
1691480966.206444-CDS-H-paniculata_contig23920:3091..32651691480966.206444-CDS-H-paniculata_contig23920:3091..3265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23920 3092..3265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23920.6470.1prot_H-paniculata_contig23920.6470.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23920 3092..3265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23920.6470.1

>prot_H-paniculata_contig23920.6470.1 ID=prot_H-paniculata_contig23920.6470.1|Name=mRNA_H-paniculata_contig23920.6470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
REELFAYLINWQVVETQGIIQAKMRPWIVKKIIEYLGEEEKTLTEFILTK
LGQRASPQ
back to top

mRNA from alignment at H-paniculata_contig23920:3092..3265-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23920.6470.1 ID=mRNA_H-paniculata_contig23920.6470.1|Name=mRNA_H-paniculata_contig23920.6470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig23920:3092..3265- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGAGGAGTTGTTCGCTTATCTAATCAACTGGCAGGTGGTTGAGACGCA GGGTATCATACAGGCCAAGATGAGGCCTTGGATCGTAAAGAAGATTATAG AGTACCTAGGAGAGGAGGAGAAGACACTGACCGAGTTTATTCTAACCAAG CTCGGACAGCGCGCATCACCGCAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig23920:3092..3265-

>mRNA_H-paniculata_contig23920.6470.1 ID=mRNA_H-paniculata_contig23920.6470.1|Name=mRNA_H-paniculata_contig23920.6470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig23920:3092..3265- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTGAGGAGTTGTTCGCTTATCTAATCAACTGGCAGGTGGTTGAGACGCA
GGGTATCATACAGGCCAAGATGAGGCCTTGGATCGTAAAGAAGATTATAG
AGTACCTAGGAGAGGAGGAGAAGACACTGACCGAGTTTATTCTAACCAAG
CTCGGACAGCGCGCATCACCGCAGCGTGAGGAGTTGTTCGCTTATCTAAT
CAACTGGCAGGTGGTTGAGACGCAGGGTATCATACAGGCCAAGATGAGGC
CTTGGATCGTAAAGAAGATTATAGAGTACCTAGGAGAGGAGGAGAAGACA
CTGACCGAGTTTATTCTAACCAAGCTCGGACAGCGCGCATCACCGCAG
back to top