mRNA_H-paniculata_contig23917.6468.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: D8LKW8_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW8_ECTSI) HSP 1 Score: 181 bits (460), Expect = 2.600e-48 Identity = 111/180 (61.67%), Postives = 123/180 (68.33%), Query Frame = 1
Query: 139 DKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPMGCQIELNDDGTPAEIDPNDNTRPEGFTTNMPMVMANHXXXXXXXXXXXXXXXXXXXXXXXXXXXKTPTKNVPPAPAARISAVLPGLGKPLTVPVSARPLGARFAQAVARLGGPEPVFPAPEKSRPGSGGDG 678
+KP+AEIEYAH+GTAVWDLGWHPVGHVLASGSNDHTVKFWVRNR GD MGC+ ELN+DGT AE+DP+D TRPEGFT + A XXXXXXXXXXXXX + PTK LPGLGKPL VP+S PLG RFAQ + RLGGPE P+ S G GG G
Sbjct: 325 EKPHAEIEYAHDGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRVGDTMGCKPELNEDGTAAEVDPDDTTRPEGFTPSPAATAA--------FAALDAAXXXXXXXXXXXXXPEIPTK-------------LPGLGKPLAVPLSKLPLGNRFAQTIVRLGGPELGAGDPDSSSRGKGGRG 483
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: A0A6H5JUK6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK6_9PHAE) HSP 1 Score: 114 bits (284), Expect = 1.530e-24 Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 1
Query: 139 DKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPMGCQIEL 303
+KP+AEIEYAH+GTAVWDLGWHPVGHVLASGSNDHTVKFWVRNR GD MGC+ E+
Sbjct: 171 EKPHAEIEYAHDGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRVGDTMGCKPEV 225
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: A0A836CIR2_9STRA (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR2_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 6.550e-19 Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1
Query: 139 DKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPMGCQIELNDDGTPAE 327
++P A I AH+ TAVWD+ WHP+GHV+A+GSNDHTVKFW RNR GDP+G + E++ DG P E
Sbjct: 325 EQPEAVIPQAHDDTAVWDISWHPLGHVVATGSNDHTVKFWARNRPGDPLGVEPEVDLDGNPVE 387
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: T1EGA4_HELRO (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1EGA4_HELRO) HSP 1 Score: 82.4 bits (202), Expect = 6.050e-14 Identity = 40/69 (57.97%), Postives = 45/69 (65.22%), Query Frame = 1
Query: 136 LDKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPMGCQIELNDDGTPAEIDPND 342
+DK IE AHE T VW L WHP+GH+LASGSNDHT KFW RNR GD M + LN P +D ND
Sbjct: 412 IDKEVGSIENAHE-TMVWSLDWHPLGHILASGSNDHTTKFWTRNRPGDLMRDRYNLNT--LPYGVDEND 477
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: L8GUA6_ACACA (WD domain, G-beta repeat-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GUA6_ACACA) HSP 1 Score: 82.0 bits (201), Expect = 9.940e-14 Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query: 136 LDKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPM 285
LD P I+ AHEG+ +WD+ WHP+GH+L SGSNDHT KFW RNR GDPM
Sbjct: 290 LDAPQGIIQNAHEGS-IWDMAWHPLGHILCSGSNDHTTKFWCRNRPGDPM 338
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: A0A2P2I5D5_9CRUS (Pre-mRNA 3' end processing protein WDR33-like (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I5D5_9CRUS) HSP 1 Score: 81.6 bits (200), Expect = 1.010e-13 Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 1
Query: 139 DKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPMGCQIELN 306
DK I+ AH+G +WDL WHP+GH+LASGSNDHT KFW RNR GD M + LN
Sbjct: 122 DKEVGNIDAAHDGI-IWDLAWHPLGHILASGSNDHTTKFWTRNRPGDKMRDKYNLN 176
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: A0A1Y3ATQ8_EURMA (Uncharacterized protein (Fragment) n=1 Tax=Euroglyphus maynei TaxID=6958 RepID=A0A1Y3ATQ8_EURMA) HSP 1 Score: 76.3 bits (186), Expect = 2.240e-13 Identity = 33/56 (58.93%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 139 DKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPMGCQIELN 306
DK +E AHE + VW L WHP+GH+L SGSNDHT KFW RNR GD M + LN
Sbjct: 45 DKEIGGMENAHE-SIVWSLSWHPLGHILTSGSNDHTCKFWTRNRPGDKMRDRYNLN 99
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: A0A0B6YEB8_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6YEB8_9EUPU) HSP 1 Score: 74.7 bits (182), Expect = 2.360e-13 Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 139 DKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPMGCQIELN 306
D +E AHEG VW + WHP+GH+LASGSNDH KFW RNR GD M + LN
Sbjct: 6 DHEVGGMEEAHEGM-VWSVAWHPLGHILASGSNDHATKFWTRNRPGDEMRDKYNLN 60
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: UPI000C76E6B7 (pre-mRNA 3' end processing protein WDR33-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C76E6B7) HSP 1 Score: 80.5 bits (197), Expect = 2.450e-13 Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 1
Query: 139 DKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPMGCQIELN 306
+K +IE AHE + VW L WHPVGH+L +GSNDHTVKFW RNR GDPM + LN
Sbjct: 198 EKEVGQIEQAHE-SIVWTLVWHPVGHILTTGSNDHTVKFWSRNRPGDPMRDKYNLN 252
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: K3W5I3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5I3_GLOUD) HSP 1 Score: 80.9 bits (198), Expect = 2.560e-13 Identity = 41/77 (53.25%), Postives = 50/77 (64.94%), Query Frame = 1
Query: 151 AEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPM-----GCQIELND----DGTPAEIDPNDNTRP 354
A I AH+ TAVWD+ WHPVGHV+A+GSNDH+ KFW RNR GDPM G Q LN+ P+ IDP++ P
Sbjct: 355 ASIPQAHD-TAVWDIQWHPVGHVVATGSNDHSTKFWCRNRPGDPMDDKYNGGQTVLNEPDAMSSEPSRIDPSEEFLP 430 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig23917.6468.1 >prot_H-paniculata_contig23917.6468.1 ID=prot_H-paniculata_contig23917.6468.1|Name=mRNA_H-paniculata_contig23917.6468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=283bp MLCLLLCFSCVRFFVFMFSFLFCLIFSLDKPYAEIEYAHEGTAVWDLGWHback to top mRNA from alignment at H-paniculata_contig23917:593..2016+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig23917.6468.1 ID=mRNA_H-paniculata_contig23917.6468.1|Name=mRNA_H-paniculata_contig23917.6468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1424bp|location=Sequence derived from alignment at H-paniculata_contig23917:593..2016+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig23917:593..2016+ >mRNA_H-paniculata_contig23917.6468.1 ID=mRNA_H-paniculata_contig23917.6468.1|Name=mRNA_H-paniculata_contig23917.6468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at H-paniculata_contig23917:593..2016+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |