prot_H-paniculata_contig23917.6468.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig23917.6468.1
Unique Nameprot_H-paniculata_contig23917.6468.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length283
Homology
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: D8LKW8_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW8_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 5.620e-49
Identity = 111/180 (61.67%), Postives = 123/180 (68.33%), Query Frame = 0
Query:   29 DKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPMGCQIELNDDGTPAEIDPNDNTRPEGFTTNMPMVMANHXXXXXXXXXXXXXXXXXXXXXXXXXXXKTPTKNVPPAPAARISAVLPGLGKPLTVPVSARPLGARFAQAVARLGGPEPVFPAPEKSRPGSGGDG 208
            +KP+AEIEYAH+GTAVWDLGWHPVGHVLASGSNDHTVKFWVRNR GD MGC+ ELN+DGT AE+DP+D TRPEGFT +     A               XXXXXXXXXXXXX + PTK             LPGLGKPL VP+S  PLG RFAQ + RLGGPE     P+ S  G GG G
Sbjct:  325 EKPHAEIEYAHDGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRVGDTMGCKPELNEDGTAAEVDPDDTTRPEGFTPSPAATAA--------FAALDAAXXXXXXXXXXXXXPEIPTK-------------LPGLGKPLAVPLSKLPLGNRFAQTIVRLGGPELGAGDPDSSSRGKGGRG 483          
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: A0A6H5JUK6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK6_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.940e-25
Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 0
Query:   29 DKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPMGCQIEL 83
            +KP+AEIEYAH+GTAVWDLGWHPVGHVLASGSNDHTVKFWVRNR GD MGC+ E+
Sbjct:  171 EKPHAEIEYAHDGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRVGDTMGCKPEV 225          
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: A0A836CIR2_9STRA (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIR2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.800e-19
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 0
Query:   29 DKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPMGCQIELNDDGTPAE 91
            ++P A I  AH+ TAVWD+ WHP+GHV+A+GSNDHTVKFW RNR GDP+G + E++ DG P E
Sbjct:  325 EQPEAVIPQAHDDTAVWDISWHPLGHVVATGSNDHTVKFWARNRPGDPLGVEPEVDLDGNPVE 387          
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: T1EGA4_HELRO (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1EGA4_HELRO)

HSP 1 Score: 83.6 bits (205), Expect = 1.790e-14
Identity = 40/69 (57.97%), Postives = 45/69 (65.22%), Query Frame = 0
Query:   28 LDKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPMGCQIELNDDGTPAEIDPND 96
            +DK    IE AHE T VW L WHP+GH+LASGSNDHT KFW RNR GD M  +  LN    P  +D ND
Sbjct:  412 IDKEVGSIENAHE-TMVWSLDWHPLGHILASGSNDHTTKFWTRNRPGDLMRDRYNLNT--LPYGVDEND 477          
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: L8GUA6_ACACA (WD domain, G-beta repeat-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GUA6_ACACA)

HSP 1 Score: 83.2 bits (204), Expect = 2.930e-14
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:   28 LDKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPM 77
            LD P   I+ AHEG+ +WD+ WHP+GH+L SGSNDHT KFW RNR GDPM
Sbjct:  290 LDAPQGIIQNAHEGS-IWDMAWHPLGHILCSGSNDHTTKFWCRNRPGDPM 338          
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: A0A2P2I5D5_9CRUS (Pre-mRNA 3' end processing protein WDR33-like (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I5D5_9CRUS)

HSP 1 Score: 82.8 bits (203), Expect = 3.010e-14
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 0
Query:   29 DKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPMGCQIELN 84
            DK    I+ AH+G  +WDL WHP+GH+LASGSNDHT KFW RNR GD M  +  LN
Sbjct:  122 DKEVGNIDAAHDGI-IWDLAWHPLGHILASGSNDHTTKFWTRNRPGDKMRDKYNLN 176          
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: A0A1Y3ATQ8_EURMA (Uncharacterized protein (Fragment) n=1 Tax=Euroglyphus maynei TaxID=6958 RepID=A0A1Y3ATQ8_EURMA)

HSP 1 Score: 77.8 bits (190), Expect = 4.700e-14
Identity = 37/66 (56.06%), Postives = 43/66 (65.15%), Query Frame = 0
Query:   19 SFLFCLIFSLDKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPMGCQIELN 84
            S LF L+   DK    +E AHE + VW L WHP+GH+L SGSNDHT KFW RNR GD M  +  LN
Sbjct:   36 SILFWLV-GTDKEIGGMENAHE-SIVWSLSWHPLGHILTSGSNDHTCKFWTRNRPGDKMRDRYNLN 99          
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: A0A0B6YEB8_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6YEB8_9EUPU)

HSP 1 Score: 75.9 bits (185), Expect = 6.920e-14
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 0
Query:   29 DKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPMGCQIELN 84
            D     +E AHEG  VW + WHP+GH+LASGSNDH  KFW RNR GD M  +  LN
Sbjct:    6 DHEVGGMEEAHEGM-VWSVAWHPLGHILASGSNDHATKFWTRNRPGDEMRDKYNLN 60          
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: UPI000C76E6B7 (pre-mRNA 3' end processing protein WDR33-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C76E6B7)

HSP 1 Score: 81.6 bits (200), Expect = 7.330e-14
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 0
Query:   29 DKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPMGCQIELN 84
            +K   +IE AHE + VW L WHPVGH+L +GSNDHTVKFW RNR GDPM  +  LN
Sbjct:  198 EKEVGQIEQAHE-SIVWTLVWHPVGHILTTGSNDHTVKFWSRNRPGDPMRDKYNLN 252          
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Match: K3W5I3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5I3_GLOUD)

HSP 1 Score: 82.0 bits (201), Expect = 7.570e-14
Identity = 41/81 (50.62%), Postives = 51/81 (62.96%), Query Frame = 0
Query:   29 DKPYAEIEYAHEGTAVWDLGWHPVGHVLASGSNDHTVKFWVRNRTGDPM-----GCQIELND----DGTPAEIDPNDNTRP 100
            +   A I  AH+ TAVWD+ WHPVGHV+A+GSNDH+ KFW RNR GDPM     G Q  LN+       P+ IDP++   P
Sbjct:  351 ENALASIPQAHD-TAVWDIQWHPVGHVVATGSNDHSTKFWCRNRPGDPMDDKYNGGQTVLNEPDAMSSEPSRIDPSEEFLP 430          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23917.6468.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKW8_ECTSI5.620e-4961.67CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JUK6_9PHAE3.940e-2585.45CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CIR2_9STRA1.800e-1961.90WD40-repeat-containing domain protein (Fragment) n... [more]
T1EGA4_HELRO1.790e-1457.97Uncharacterized protein n=1 Tax=Helobdella robusta... [more]
L8GUA6_ACACA2.930e-1466.00WD domain, G-beta repeat-containing protein n=1 Ta... [more]
A0A2P2I5D5_9CRUS3.010e-1460.71Pre-mRNA 3' end processing protein WDR33-like (Fra... [more]
A0A1Y3ATQ8_EURMA4.700e-1456.06Uncharacterized protein (Fragment) n=1 Tax=Eurogly... [more]
A0A0B6YEB8_9EUPU6.920e-1457.14Uncharacterized protein (Fragment) n=1 Tax=Arion v... [more]
UPI000C76E6B77.330e-1462.50pre-mRNA 3' end processing protein WDR33-like n=1 ... [more]
K3W5I3_GLOUD7.570e-1450.62Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 28..69
e-value: 1.3E-5
score: 34.7
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 37..68
score: 10.275
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 22..129
e-value: 4.7E-7
score: 31.0
NoneNo IPR availablePANTHERPTHR22836WD40 REPEAT PROTEINcoord: 28..165
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..283
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availableTMHMMTMhelixcoord: 5..27
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 37..68
score: 8.65
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 39..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23917contigH-paniculata_contig23917:647..2016 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23917.6468.1mRNA_H-paniculata_contig23917.6468.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig23917 593..2016 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig23917.6468.1 ID=prot_H-paniculata_contig23917.6468.1|Name=mRNA_H-paniculata_contig23917.6468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=283bp
MLCLLLCFSCVRFFVFMFSFLFCLIFSLDKPYAEIEYAHEGTAVWDLGWH
PVGHVLASGSNDHTVKFWVRNRTGDPMGCQIELNDDGTPAEIDPNDNTRP
EGFTTNMPMVMANHNNNHHHHGHHQAQTPATPTTTSAAASSKTPTKNVPP
APAARISAVLPGLGKPLTVPVSARPLGARFAQAVARLGGPEPVFPAPEKS
RPGSGGDGGGNKGRKHNNSGSSGNRSGKDRGGARDRGVAGGGGGGKDGGG
SNNSNNSNRGPRSGRTDGGGSNNKNSGGGSARG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf