mRNA_H-paniculata_contig2391.6466.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2391.6466.1
Unique NamemRNA_H-paniculata_contig2391.6466.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: UPI000B797FC7 (uncharacterized protein LOC110699849 n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B797FC7)

HSP 1 Score: 90.1 bits (222), Expect = 5.030e-19
Identity = 45/113 (39.82%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKSVKIDREAFDAAVE 339
            G+NI  + QPAQSPDLN+ DLG F S++S  ++     +D LV+ VK  YD +D    +  W +L N   ++LKA GGN +++ H   +K + +G LP+ V + +E    AVE
Sbjct:  234 GFNIQFIFQPAQSPDLNVLDLGLFRSIQSLQYQFFPKDLDELVQKVKDSYDTFDPEVNKYIWVTLQNCMIKILKAKGGNKYKIPHMNKKKLENIGILPEIVVVQKEVVVEAVE 346          
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: A0A6G0XDP2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XDP2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.270e-18
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKSVKIDREAFDAAVE 339
            G + S+  QP  SPD N+ DLGFFAS++S  ++    ++D LV  V   +D Y  A L + WQSL     +++KA GGNDF++ H   ++  R G L  +   D++A+  A+E
Sbjct:   67 GSDFSIAPQPPNSPDTNVLDLGFFASIQSLQYKHVPRSVDELVSCVMLEFDKYSMAKLSKIWQSLQLVLLEIVKAKGGNDFKLPHASKDRNARCGKLLDNAVCDKDAYQEAIE 179          
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: UPI0019D5EA5F (uncharacterized protein LOC120691778 isoform X2 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5EA5F)

HSP 1 Score: 87.0 bits (214), Expect = 1.760e-18
Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = 1
Query:    1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKSVKIDREAFDAAV 336
            G++I L+ QP  SPDLN+ DLGFFASL+S         +D L++ V+  +D YD  TL R + +L     +V+K  GGN +++ H    + + +G LPKS+  DR+ ++  +
Sbjct:  142 GFDIRLINQPTNSPDLNVLDLGFFASLQSLTNERVSRNLDDLIDNVQKEFDNYDPTTLNREFLTLQGCMIEVMKDGGGNRYKISHMNKNRLEALGMLPKSLSCDRQLYEDVI 253          
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: UPI0014935307 (uncharacterized protein LOC117833175 n=1 Tax=Setaria viridis TaxID=4556 RepID=UPI0014935307)

HSP 1 Score: 88.2 bits (217), Expect = 1.800e-18
Identity = 41/113 (36.28%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKSVKIDREAFDAAVE 339
            G +I L+ QP  SPD+N+ DLGFFASL+S  +      M+ L+  VK+ Y+ YD  ++   + +L     +V+KA GGN +++ H   ++ + +G LPKS+  DR+ +++ +E
Sbjct:  217 GLDIRLMNQPPNSPDMNVLDLGFFASLQSLTYTTISNNMNDLIANVKNEYENYDHRSIRNVFLTLQGCMIEVMKASGGNKYKIPHINKDRLEALGMLPKSLNCDRQIYESVME 329          
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: A0A7S3GU94_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU94_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.870e-18
Identity = 45/116 (38.79%), Postives = 74/116 (63.79%), Query Frame = 1
Query:    1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGA--MDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEV-HHTETEKRQRVGSLPKSVKIDREAFDAAVE 339
            GW+I++V Q AQSPDLN+ DLG F SLK +V + + GA  +D L++ V+ +Y  Y   TL++ W      + ++++A+G N ++  HH  T  R+  GS   ++ ID +A++AAV+
Sbjct:   42 GWHITMVRQRAQSPDLNVMDLGLFHSLKVQVIQLKDGAHNIDELIQKVRVVYQQYSRDTLDQIWGHQVACWTEIMRAMGSNQYKAPHHGGTVSRKEEGSAV-NLSIDADAYNAAVD 156          
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: UPI00053F8527 (uncharacterized protein LOC104897330 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F8527)

HSP 1 Score: 89.0 bits (219), Expect = 2.520e-18
Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKSVKIDREAFDAAV 336
            G+NI L+ QPAQSPDLN+ DLGFF ++++  ++     +D L+  V+  YD +D   L+  W  L     ++LK  GGN+F+  H    K +R+G LP++V +D+   D AV
Sbjct:  392 GFNIQLINQPAQSPDLNVLDLGFFRAIQALQYQSFPKNLDELILRVQDCYDFFDPEVLKYTWLQLQYVMVEILKCKGGNNFKNPHHAKRKLERLGLLPENVTVDQAVIDEAV 503          
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: UPI0019D68C4E (uncharacterized protein LOC120691778 isoform X1 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D68C4E)

HSP 1 Score: 87.0 bits (214), Expect = 2.600e-18
Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = 1
Query:    1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKSVKIDREAFDAAV 336
            G++I L+ QP  SPDLN+ DLGFFASL+S         +D L++ V+  +D YD  TL R + +L     +V+K  GGN +++ H    + + +G LPKS+  DR+ ++  +
Sbjct:  167 GFDIRLINQPTNSPDLNVLDLGFFASLQSLTNERVSRNLDDLIDNVQKEFDNYDPTTLNREFLTLQGCMIEVMKDGGGNRYKISHMNKNRLEALGMLPKSLSCDRQLYEDVI 278          
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: A0A6G0PL40_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0PL40_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.880e-18
Identity = 43/113 (38.05%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKSVKIDREAFDAAVE 339
            GWNI L  QPA SPD N  DLG+F+S+++  ++E    +D L+  V+  YDA +   L+  + +L   +   L+A G N++++ H   +K +R+G LP+S+  D EAF  AV+
Sbjct:  225 GWNIQLEFQPANSPDYNTLDLGYFSSIQALQYQEDCYNIDQLIRAVRKSYDALECEKLDNIFLTLQKVFECALRAGGSNEYKLPHIGKDKLRRLGKLPQSLPCDLEAFRYAVD 337          
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: UPI00053F7236 (uncharacterized protein LOC104908485 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7236)

HSP 1 Score: 85.9 bits (211), Expect = 5.950e-18
Identity = 43/113 (38.05%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKSVKIDREAFDAAVE 339
            G+NI L+ QPAQSPDLN+ DLGFF ++++ +++     +D L+E V+  YD +D   ++  W  L     ++LK  GGN+++  H    + +R+G LPK+V+ D+   D AV+
Sbjct:  152 GFNIKLIQQPAQSPDLNVLDLGFFRAIQALMYQTFPKNIDELIENVQDAYDKFDPNVVKYTWLKLHWVMVEILKVKGGNNYKNPHHGKARLERLGLLPKNVQFDQ-IVDEAVQ 263          
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: A0A0P0V3R9_ORYSJ (Os01g0541250 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0V3R9_ORYSJ)

HSP 1 Score: 84.7 bits (208), Expect = 1.020e-17
Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKSVKIDREAFD 327
            G++I L+ QP  SPD+N  DLGFFASL+S  +R     MD L++ V+  + AYD   L R + +L +   +V+KA GGN +++ H   E+ +R+  LP ++  D E +D
Sbjct:  123 GFDIRLMHQPPNSPDMNALDLGFFASLQSLTYRRISRNMDDLIDNVEQEFQAYDDNKLNRVFLTLQSCLLEVMKADGGNGYKIPHMGKERLERLDILPNTLSCDFELYD 231          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000B797FC75.030e-1939.82uncharacterized protein LOC110699849 n=2 Tax=Cheno... [more]
A0A6G0XDP2_9STRA1.270e-1838.05Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI0019D5EA5F1.760e-1837.50uncharacterized protein LOC120691778 isoform X2 n=... [more]
UPI00149353071.800e-1836.28uncharacterized protein LOC117833175 n=1 Tax=Setar... [more]
A0A7S3GU94_9STRA1.870e-1838.79Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
UPI00053F85272.520e-1839.29uncharacterized protein LOC104897330 n=1 Tax=Beta ... [more]
UPI0019D68C4E2.600e-1837.50uncharacterized protein LOC120691778 isoform X1 n=... [more]
A0A6G0PL40_9STRA2.880e-1838.05Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
UPI00053F72365.950e-1838.05uncharacterized protein LOC104908485 n=1 Tax=Beta ... [more]
A0A0P0V3R9_ORYSJ1.020e-1739.45Os01g0541250 protein n=1 Tax=Oryza sativa subsp. j... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2391contigH-paniculata_contig2391:19291..19632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score88.2
Seed ortholog evalue2.7e-15
Seed eggNOG ortholog161934.XP_010682491.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2EA2H@1,2SGC1@2759,380US@33090
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Exons1
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929683.4486337-CDS-H-paniculata_contig2391:19290..196321622929683.4486337-CDS-H-paniculata_contig2391:19290..19632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2391 19291..19632 -
1691480966.0774431-CDS-H-paniculata_contig2391:19290..196321691480966.0774431-CDS-H-paniculata_contig2391:19290..19632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2391 19291..19632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2391.6466.1prot_H-paniculata_contig2391.6466.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2391 19291..19632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2391.6466.1

>prot_H-paniculata_contig2391.6466.1 ID=prot_H-paniculata_contig2391.6466.1|Name=mRNA_H-paniculata_contig2391.6466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMY
DAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKS
VKIDREAFDAAVE*
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mRNA from alignment at H-paniculata_contig2391:19291..19632-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2391.6466.1 ID=mRNA_H-paniculata_contig2391.6466.1|Name=mRNA_H-paniculata_contig2391.6466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at H-paniculata_contig2391:19291..19632- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTGGAACATCAGTCTCGTAACTCAGCCTGCACAGTCACCAGATCTCAA CATCAACGATTTGGGGTTCTTTGCATCTCTGAAAAGTAGGGTTTGGAGGG AGCGCTACGGTGCGATGGACGGCCTTGTGGAGGGGGTAAAGAGCATGTAC GATGCGTACGACGCGGCAACCTTAGAGAGGTTTTGGCAGAGCCTCTTTAA TCGGTATAATCAGGTCTTGAAGGCGCTAGGAGGTAACGATTTCGAAGTAC ATCACACCGAAACCGAGAAAAGGCAGCGTGTGGGAAGTCTGCCAAAATCG GTCAAAATCGACCGAGAGGCTTTCGACGCGGCGGTAGAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2391:19291..19632-

>mRNA_H-paniculata_contig2391.6466.1 ID=mRNA_H-paniculata_contig2391.6466.1|Name=mRNA_H-paniculata_contig2391.6466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig2391:19291..19632- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTGGAACATCAGTCTCGTAACTCAGCCTGCACAGTCACCAGATCTCAA
CATCAACGATTTGGGGTTCTTTGCATCTCTGAAAAGTAGGGTTTGGAGGG
AGCGCTACGGTGCGATGGACGGCCTTGTGGAGGGGGTAAAGAGCATGTAC
GATGCGTACGACGCGGCAACCTTAGAGAGGTTTTGGCAGAGCCTCTTTAA
TCGGTATAATCAGGTCTTGAAGGCGCTAGGAGGTAACGATTTCGAAGTAC
ATCACACCGAAACCGAGAAAAGGCAGCGTGTGGGAAGTCTGCCAAAATCG
GTCAAAATCGACCGAGAGGCTTTCGACGCGGCGGTAGAATGAGGGTGGAA
CATCAGTCTCGTAACTCAGCCTGCACAGTCACCAGATCTCAACATCAACG
ATTTGGGGTTCTTTGCATCTCTGAAAAGTAGGGTTTGGAGGGAGCGCTAC
GGTGCGATGGACGGCCTTGTGGAGGGGGTAAAGAGCATGTACGATGCGTA
CGACGCGGCAACCTTAGAGAGGTTTTGGCAGAGCCTCTTTAATCGGTATA
ATCAGGTCTTGAAGGCGCTAGGAGGTAACGATTTCGAAGTACATCACACC
GAAACCGAGAAAAGGCAGCGTGTGGGAAGTCTGCCAAAATCGGTCAAAAT
CGACCGAGAGGCTTTCGACGCGGCGGTAGAATGA
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