mRNA_H-paniculata_contig2391.6466.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: UPI000B797FC7 (uncharacterized protein LOC110699849 n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B797FC7) HSP 1 Score: 90.1 bits (222), Expect = 5.030e-19 Identity = 45/113 (39.82%), Postives = 68/113 (60.18%), Query Frame = 1
Query: 1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKSVKIDREAFDAAVE 339
G+NI + QPAQSPDLN+ DLG F S++S ++ +D LV+ VK YD +D + W +L N ++LKA GGN +++ H +K + +G LP+ V + +E AVE
Sbjct: 234 GFNIQFIFQPAQSPDLNVLDLGLFRSIQSLQYQFFPKDLDELVQKVKDSYDTFDPEVNKYIWVTLQNCMIKILKAKGGNKYKIPHMNKKKLENIGILPEIVVVQKEVVVEAVE 346
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: A0A6G0XDP2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XDP2_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 1.270e-18 Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = 1
Query: 1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKSVKIDREAFDAAVE 339
G + S+ QP SPD N+ DLGFFAS++S ++ ++D LV V +D Y A L + WQSL +++KA GGNDF++ H ++ R G L + D++A+ A+E
Sbjct: 67 GSDFSIAPQPPNSPDTNVLDLGFFASIQSLQYKHVPRSVDELVSCVMLEFDKYSMAKLSKIWQSLQLVLLEIVKAKGGNDFKLPHASKDRNARCGKLLDNAVCDKDAYQEAIE 179
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: UPI0019D5EA5F (uncharacterized protein LOC120691778 isoform X2 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5EA5F) HSP 1 Score: 87.0 bits (214), Expect = 1.760e-18 Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = 1
Query: 1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKSVKIDREAFDAAV 336
G++I L+ QP SPDLN+ DLGFFASL+S +D L++ V+ +D YD TL R + +L +V+K GGN +++ H + + +G LPKS+ DR+ ++ +
Sbjct: 142 GFDIRLINQPTNSPDLNVLDLGFFASLQSLTNERVSRNLDDLIDNVQKEFDNYDPTTLNREFLTLQGCMIEVMKDGGGNRYKISHMNKNRLEALGMLPKSLSCDRQLYEDVI 253
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: UPI0014935307 (uncharacterized protein LOC117833175 n=1 Tax=Setaria viridis TaxID=4556 RepID=UPI0014935307) HSP 1 Score: 88.2 bits (217), Expect = 1.800e-18 Identity = 41/113 (36.28%), Postives = 70/113 (61.95%), Query Frame = 1
Query: 1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKSVKIDREAFDAAVE 339
G +I L+ QP SPD+N+ DLGFFASL+S + M+ L+ VK+ Y+ YD ++ + +L +V+KA GGN +++ H ++ + +G LPKS+ DR+ +++ +E
Sbjct: 217 GLDIRLMNQPPNSPDMNVLDLGFFASLQSLTYTTISNNMNDLIANVKNEYENYDHRSIRNVFLTLQGCMIEVMKASGGNKYKIPHINKDRLEALGMLPKSLNCDRQIYESVME 329
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: A0A7S3GU94_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU94_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.870e-18 Identity = 45/116 (38.79%), Postives = 74/116 (63.79%), Query Frame = 1
Query: 1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGA--MDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEV-HHTETEKRQRVGSLPKSVKIDREAFDAAVE 339
GW+I++V Q AQSPDLN+ DLG F SLK +V + + GA +D L++ V+ +Y Y TL++ W + ++++A+G N ++ HH T R+ GS ++ ID +A++AAV+
Sbjct: 42 GWHITMVRQRAQSPDLNVMDLGLFHSLKVQVIQLKDGAHNIDELIQKVRVVYQQYSRDTLDQIWGHQVACWTEIMRAMGSNQYKAPHHGGTVSRKEEGSAV-NLSIDADAYNAAVD 156
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: UPI00053F8527 (uncharacterized protein LOC104897330 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F8527) HSP 1 Score: 89.0 bits (219), Expect = 2.520e-18 Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = 1
Query: 1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKSVKIDREAFDAAV 336
G+NI L+ QPAQSPDLN+ DLGFF ++++ ++ +D L+ V+ YD +D L+ W L ++LK GGN+F+ H K +R+G LP++V +D+ D AV
Sbjct: 392 GFNIQLINQPAQSPDLNVLDLGFFRAIQALQYQSFPKNLDELILRVQDCYDFFDPEVLKYTWLQLQYVMVEILKCKGGNNFKNPHHAKRKLERLGLLPENVTVDQAVIDEAV 503
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: UPI0019D68C4E (uncharacterized protein LOC120691778 isoform X1 n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D68C4E) HSP 1 Score: 87.0 bits (214), Expect = 2.600e-18 Identity = 42/112 (37.50%), Postives = 67/112 (59.82%), Query Frame = 1
Query: 1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKSVKIDREAFDAAV 336
G++I L+ QP SPDLN+ DLGFFASL+S +D L++ V+ +D YD TL R + +L +V+K GGN +++ H + + +G LPKS+ DR+ ++ +
Sbjct: 167 GFDIRLINQPTNSPDLNVLDLGFFASLQSLTNERVSRNLDDLIDNVQKEFDNYDPTTLNREFLTLQGCMIEVMKDGGGNRYKISHMNKNRLEALGMLPKSLSCDRQLYEDVI 278
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: A0A6G0PL40_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0PL40_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 2.880e-18 Identity = 43/113 (38.05%), Postives = 69/113 (61.06%), Query Frame = 1
Query: 1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKSVKIDREAFDAAVE 339
GWNI L QPA SPD N DLG+F+S+++ ++E +D L+ V+ YDA + L+ + +L + L+A G N++++ H +K +R+G LP+S+ D EAF AV+
Sbjct: 225 GWNIQLEFQPANSPDYNTLDLGYFSSIQALQYQEDCYNIDQLIRAVRKSYDALECEKLDNIFLTLQKVFECALRAGGSNEYKLPHIGKDKLRRLGKLPQSLPCDLEAFRYAVD 337
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: UPI00053F7236 (uncharacterized protein LOC104908485 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7236) HSP 1 Score: 85.9 bits (211), Expect = 5.950e-18 Identity = 43/113 (38.05%), Postives = 71/113 (62.83%), Query Frame = 1
Query: 1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKSVKIDREAFDAAVE 339
G+NI L+ QPAQSPDLN+ DLGFF ++++ +++ +D L+E V+ YD +D ++ W L ++LK GGN+++ H + +R+G LPK+V+ D+ D AV+
Sbjct: 152 GFNIKLIQQPAQSPDLNVLDLGFFRAIQALMYQTFPKNIDELIENVQDAYDKFDPNVVKYTWLKLHWVMVEILKVKGGNNYKNPHHGKARLERLGLLPKNVQFDQ-IVDEAVQ 263
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Match: A0A0P0V3R9_ORYSJ (Os01g0541250 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0V3R9_ORYSJ) HSP 1 Score: 84.7 bits (208), Expect = 1.020e-17 Identity = 43/109 (39.45%), Postives = 67/109 (61.47%), Query Frame = 1
Query: 1 GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYDAYDAATLERFWQSLFNRYNQVLKALGGNDFEVHHTETEKRQRVGSLPKSVKIDREAFD 327
G++I L+ QP SPD+N DLGFFASL+S +R MD L++ V+ + AYD L R + +L + +V+KA GGN +++ H E+ +R+ LP ++ D E +D
Sbjct: 123 GFDIRLMHQPPNSPDMNALDLGFFASLQSLTYRRISRNMDDLIDNVEQEFQAYDDNKLNRVFLTLQSCLLEVMKADGGNGYKIPHMGKERLERLDILPNTLSCDFELYD 231 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2391.6466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2391.6466.1 >prot_H-paniculata_contig2391.6466.1 ID=prot_H-paniculata_contig2391.6466.1|Name=mRNA_H-paniculata_contig2391.6466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp GWNISLVTQPAQSPDLNINDLGFFASLKSRVWRERYGAMDGLVEGVKSMYback to top mRNA from alignment at H-paniculata_contig2391:19291..19632- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2391.6466.1 ID=mRNA_H-paniculata_contig2391.6466.1|Name=mRNA_H-paniculata_contig2391.6466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at H-paniculata_contig2391:19291..19632- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2391:19291..19632- >mRNA_H-paniculata_contig2391.6466.1 ID=mRNA_H-paniculata_contig2391.6466.1|Name=mRNA_H-paniculata_contig2391.6466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig2391:19291..19632- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |