mRNA_H-paniculata_contig23876.6455.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23876.6455.1
Unique NamemRNA_H-paniculata_contig23876.6455.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI)

HSP 1 Score: 443 bits (1139), Expect = 2.060e-138
Identity = 243/344 (70.64%), Postives = 266/344 (77.33%), Query Frame = 1
Query:    1 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSVGTQILRS----------PLVFPAAIGGF---------TSDWGWGAGGGRERGGEXXRLRRGGGAYGGYRCGSSSSVLAGVVSRSLIAPLWAHDLSADLTGIDGHAAEYLARWSTPAEKVIRTASKLPLPVPDPAEADSTVNLMPELVSRLNRLRKSLR 975
            WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPL+HMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMC+LSRRQA+LYEEFM+RSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSP VLP L+L VGT++LRS          P  FP   GG          T+             G+      G G   G   GS  S   GV SRSLIAPLWAHDL   L G+D  + E L+R +TPAE V++  SKLPL +PDP + D ++NLMP+++ RL RLRK+LR
Sbjct: 1187 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLSHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCRLSRRQASLYEEFMARSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPFVLPPLDLGVGTRVLRSRSSSSSSWMPPCGFPTRFGGVLFEGTATAATAAXXXXXXXXXXXXGKLGSGEDGSGEKAGAGVGSRRSPDGGV-SRSLIAPLWAHDLRDGLPGLDVLSTELLSRRATPAEDVLKMPSKLPLCIPDPTQVDKSLNLMPQVLYRLTRLRKTLR 1529          
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE)

HSP 1 Score: 392 bits (1006), Expect = 1.510e-120
Identity = 236/406 (58.13%), Postives = 251/406 (61.82%), Query Frame = 1
Query:    1 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRS--------------------------------------------------------------------------------------RKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSVGTQILRS-----------PLVFPAAIGGFTSDWGWGA------GGGRERGGEXXRLRRGGGAYGGYRCGSSSSVLAGVVSRSLIAPLWAHDLSADLTGIDGHAAEYLARWSTPAEKVIRTASKLPLPVPDPAEA 909
            WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRS                                                                                      RKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMC+LSRRQA+LYEEFM+RSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSP VLP L+L VGTQ+LRS           P  FP   GG + +    A      G G + GGE  R             GS  S   GV SRSLIAPLWAHDL  DL G+D  + E L+R +TPAE V++  SKLPL +PDP  A
Sbjct: 1501 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSEDSDGGICMCRGRSFRSTKTRASSTSTSSHYHFPRIPPAATSNTAPPLPYLFPFPLDCHVCTSAPVCRYGGDSSTGGRYSSFFCRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCRLSRRQASLYEEFMARSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPFVLPPLDLGVGTQVLRSRSSSSSSSWIPPCGFPTRFGGVSFEGTQTAAADGKLGSGEDGGGENARAG----------VGSRRSPDGGV-SRSLIAPLWAHDLRDDLPGLDVLSTELLSRRATPAEDVLKMPSKLPLCIPDPTTA 1895          
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: A0A7R9ZI12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZI12_9STRA)

HSP 1 Score: 292 bits (748), Expect = 1.080e-93
Identity = 144/212 (67.92%), Postives = 171/212 (80.66%), Query Frame = 1
Query:    1 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAALQ-GGNFMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSV-------------GTQILRSPLVFP 594
            WY+LILDEAQNIKNF+SQRWQTL+ FN+QRRLLLTGTPLQN+LMELWSL+HFLMPH+FRSRKEFSYWFS P+  +VEG+  RNDDLI RLH ++RPF+LRRLKKDVE Q+PGK+EH+V C++SRRQ  LYEEFM+RSSTR ALQ GGN+MGMMN+LMQLRKVCNHPDLFE R + +P  +  L  +              G ++L S LV P
Sbjct:  123 WYYLILDEAQNIKNFQSQRWQTLVNFNTQRRLLLTGTPLQNNLMELWSLLHFLMPHIFRSRKEFSYWFSNPMNSIVEGNAARNDDLIGRLHGIIRPFVLRRLKKDVETQMPGKYEHIVKCQMSRRQMFLYEEFMARSSTRMALQKGGNYMGMMNVLMQLRKVCNHPDLFEPRTVITPFFMEPLNFATAACVVGPVGAAESGGELLSSRLVHP 334          
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: A0A835ZKJ3_9STRA (SNF2 family N-terminal domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKJ3_9STRA)

HSP 1 Score: 301 bits (770), Expect = 3.450e-93
Identity = 153/193 (79.27%), Postives = 166/193 (86.01%), Query Frame = 1
Query:    1 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAALQGGN-FMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSVGTQILR 576
            WYHLILDEA NIKNFKS RWQTLLTFNSQRRLLLTGTPLQN+LMELWSLMHFLMPHVF SR+EF+YWFSQPLT MVEGSR  + +L+ RLHSV+RPFLLRRLKK+V KQLP K EHVVMC+LSRRQA LYEEFMSRS+TRAAL GG  FMGMMN+LMQLRKVCNHPDLFE R   SP V   L  + GT I+R
Sbjct:  524 WYHLILDEAHNIKNFKSLRWQTLLTFNSQRRLLLTGTPLQNNLMELWSLMHFLMPHVFTSRREFAYWFSQPLTSMVEGSRGISGELVSRLHSVMRPFLLRRLKKEVAKQLPAKVEHVVMCRLSRRQAQLYEEFMSRSATRAALAGGGQFMGMMNVLMQLRKVCNHPDLFEPRTTASPFVAETLRYAPGTLIVR 716          
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: A0A7S3UX21_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX21_HETAK)

HSP 1 Score: 288 bits (738), Expect = 2.050e-92
Identity = 143/195 (73.33%), Postives = 163/195 (83.59%), Query Frame = 1
Query:    1 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAALQGG-NFMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSVGTQILRSP 582
            WY+LILDEA NIKNFKSQRWQT+L F++ RRLLLTGTPLQN+LMELWSLMHFLMPH+FRSRKEFSYWFS PL +MVEG +  ++DL+RRLH ++RPFLLRRLK DVEKQLPGK EHVV+  LS+RQ  LYEEFM+RSSTRAAL GG NFMGMMN+LMQLRKVCNHPDLFE R   +P  +P+L    G   L  P
Sbjct:   92 WYYLILDEAHNIKNFKSQRWQTMLNFSTARRLLLTGTPLQNNLMELWSLMHFLMPHIFRSRKEFSYWFSNPLNNMVEGGQAVSEDLVRRLHQIMRPFLLRRLKCDVEKQLPGKFEHVVLVTLSKRQQQLYEEFMARSSTRAALAGGGNFMGMMNVLMQLRKVCNHPDLFEPRPTRTPFFMPSLASLAGLPALVMP 286          
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: A0A7S2XTX0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTX0_9STRA)

HSP 1 Score: 289 bits (739), Expect = 2.690e-92
Identity = 141/199 (70.85%), Postives = 169/199 (84.92%), Query Frame = 1
Query:    7 HLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAAL-QGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSVGTQIL-----RSPL 585
            +LILDEAQNIKNF+SQRWQTL+ FN+QRRLLLTGTPLQN+LMELWSL+HFLMPHVFRSRKEFSYWFS P+ +++EG+  RNDDLI RLH ++RPF+LRRLKKDVE Q+PGK+EH+V C+LSRRQ  LYEEFM+RSSTR AL +GGNFMGMMN+LMQLRKVCNHPDLFE R + +P V   L ++    ++     +SPL
Sbjct:    1 YLILDEAQNIKNFQSQRWQTLVNFNTQRRLLLTGTPLQNNLMELWSLLHFLMPHVFRSRKEFSYWFSNPMNNIIEGNTSRNDDLIGRLHGIIRPFVLRRLKKDVETQMPGKYEHIVKCQLSRRQMFLYEEFMARSSTRVALNKGGNFMGMMNVLMQLRKVCNHPDLFEPRSVITPFVTEPLAITTAACVIGIMDHQSPL 199          
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: A0A4D9D1C0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1C0_9STRA)

HSP 1 Score: 306 bits (784), Expect = 8.630e-91
Identity = 152/186 (81.72%), Postives = 164/186 (88.17%), Query Frame = 1
Query:    1 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSV 558
            W+ LILDEA NIKNFKSQRWQTLLTFNS RRLLLTGTPLQN LMELWSLMHFLMPH+FRSRKEFSYWFS PL  MV+G+R  +D LIRRLH+++RPFLLRRLKKDVEKQLPGK EHVV+C LSRRQA LYEEFM+RSSTRAAL GGNFMGMMN+LMQLRKVCNHPDLFEAR I SP  +  L L V
Sbjct:  517 WFFLILDEAHNIKNFKSQRWQTLLTFNSHRRLLLTGTPLQNDLMELWSLMHFLMPHLFRSRKEFSYWFSNPLNSMVQGARALSDGLIRRLHTIMRPFLLRRLKKDVEKQLPGKFEHVVLCPLSRRQAHLYEEFMARSSTRAALAGGNFMGMMNVLMQLRKVCNHPDLFEARPIRSPYAMDPLALPV 702          
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: A0A1E7FQV3_9STRA (SNF2_N-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQV3_9STRA)

HSP 1 Score: 296 bits (757), Expect = 3.970e-90
Identity = 140/187 (74.87%), Postives = 168/187 (89.84%), Query Frame = 1
Query:    1 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAALQ-GGNFMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSV 558
            WY+LILDEAQNIKNF+SQRWQTL+ FN+QRRLLLTGTPLQNSLMELWSL+HFLMP++F+SRKEFSYWFS P+ +M+EG   RNDD+I+RLH ++RPF+LRRLKKDVE Q+PGK EH+V C+LSRRQ TLYEEF+SRSSTR AL+ GGNFMGMM +LMQLRKVCNHPDLFE R + +P +LP++ +SV
Sbjct:  302 WYYLILDEAQNIKNFQSQRWQTLINFNTQRRLLLTGTPLQNSLMELWSLLHFLMPYIFKSRKEFSYWFSNPMNNMIEGG-NRNDDVIKRLHGIIRPFVLRRLKKDVETQMPGKFEHIVKCQLSRRQMTLYEEFLSRSSTRKALKKGGNFMGMMTVLMQLRKVCNHPDLFEPRSVITPFILPSIPISV 487          
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: A0A397DHD3_9STRA (Helicase ATP-binding domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DHD3_9STRA)

HSP 1 Score: 284 bits (726), Expect = 5.780e-89
Identity = 136/185 (73.51%), Postives = 159/185 (85.95%), Query Frame = 1
Query:    1 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELS 555
            WY+LILDEA NIKN+KSQRWQTLLTFN+QRRLLLTGTPLQN+LMELW+LMHFLMPH+FRSR +FS+WFS P+  MVEG    ND L+ RLH+++RPF+LRRLKKDV KQ+PGK EHVV+C LS+RQ  LYE+FM+RSSTR AL GGNFMGMMN+LMQLRKVCNHPDLFEAR +  P  +  L +S
Sbjct:   62 WYYLILDEAHNIKNWKSQRWQTLLTFNTQRRLLLTGTPLQNNLMELWALMHFLMPHLFRSRAQFSHWFSTPMNAMVEGEAAVNDQLVSRLHNIIRPFVLRRLKKDVAKQMPGKFEHVVVCSLSKRQRFLYEDFMARSSTRKALSGGNFMGMMNVLMQLRKVCNHPDLFEARPVLCPFDMAPLTVS 246          
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: A0A448ZDW5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDW5_9STRA)

HSP 1 Score: 296 bits (759), Expect = 1.910e-87
Identity = 137/187 (73.26%), Postives = 170/187 (90.91%), Query Frame = 1
Query:    1 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAAL-QGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSV 558
            WY+LILDEAQNIKNF+SQRWQTL+ FN+QRRLLLTGTPLQN+LMELWSL+HFLMP++F+SRKEFSYWFS P+ +++EG+  +N D+I+RLH ++RPF+LRRLKK+VEKQ+PGK EH+V C+LSRRQ TLYEEF+SRSSTR AL QGGNFMGMMN+LMQLRKVCNHPDLFE R + +P VLP++ +++
Sbjct: 1094 WYYLILDEAQNIKNFQSQRWQTLINFNTQRRLLLTGTPLQNNLMELWSLLHFLMPYIFKSRKEFSYWFSNPMNNIIEGTANQNADVIKRLHGIIRPFVLRRLKKEVEKQMPGKFEHIVKCQLSRRQMTLYEEFLSRSSTRQALKQGGNFMGMMNVLMQLRKVCNHPDLFEPRSVVTPFVLPSISIAI 1280          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTP0_ECTSI2.060e-13870.64Similar to E1a binding protein P400 (Partial) (Fra... [more]
A0A6H5KKD6_9PHAE1.510e-12058.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9ZI12_9STRA1.080e-9367.92Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A835ZKJ3_9STRA3.450e-9379.27SNF2 family N-terminal domain-containing protein (... [more]
A0A7S3UX21_HETAK2.050e-9273.33Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2XTX0_9STRA2.690e-9270.85Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A4D9D1C0_9STRA8.630e-9181.72Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A1E7FQV3_9STRA3.970e-9074.87SNF2_N-domain-containing protein (Fragment) n=1 Ta... [more]
A0A397DHD3_9STRA5.780e-8973.51Helicase ATP-binding domain-containing protein n=2... [more]
A0A448ZDW5_9STRA1.910e-8773.26Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23876contigH-paniculata_contig23876:312..3758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score446.8
Seed ortholog evalue8.5e-123
Seed eggNOG ortholog2880.D7FTP0
KEGG koko:K11320
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0391@2759
Ec32 ortholog descriptionSNF2-related helicase/SANT domain protein
Ec32 orthologEc-11_001650.1
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons6
Model size975
Cds size975
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23876.6455.1prot_H-paniculata_contig23876.6455.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23876 312..3758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929681.765029-CDS-H-paniculata_contig23876:311..3801622929681.765029-CDS-H-paniculata_contig23876:311..380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23876 312..380 -
1691480965.2343614-CDS-H-paniculata_contig23876:311..3801691480965.2343614-CDS-H-paniculata_contig23876:311..380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23876 312..380 -
1622929681.7793858-CDS-H-paniculata_contig23876:581..7001622929681.7793858-CDS-H-paniculata_contig23876:581..700Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23876 582..700 -
1691480965.244752-CDS-H-paniculata_contig23876:581..7001691480965.244752-CDS-H-paniculata_contig23876:581..700Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23876 582..700 -
1622929681.7935617-CDS-H-paniculata_contig23876:1098..14051622929681.7935617-CDS-H-paniculata_contig23876:1098..1405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23876 1099..1405 -
1691480965.2530262-CDS-H-paniculata_contig23876:1098..14051691480965.2530262-CDS-H-paniculata_contig23876:1098..1405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23876 1099..1405 -
1622929681.8099172-CDS-H-paniculata_contig23876:2044..22121622929681.8099172-CDS-H-paniculata_contig23876:2044..2212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23876 2045..2212 -
1691480965.266622-CDS-H-paniculata_contig23876:2044..22121691480965.266622-CDS-H-paniculata_contig23876:2044..2212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23876 2045..2212 -
1622929681.8242614-CDS-H-paniculata_contig23876:2919..30521622929681.8242614-CDS-H-paniculata_contig23876:2919..3052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23876 2920..3052 -
1691480965.2748442-CDS-H-paniculata_contig23876:2919..30521691480965.2748442-CDS-H-paniculata_contig23876:2919..3052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23876 2920..3052 -
1622929681.8409464-CDS-H-paniculata_contig23876:3579..37581622929681.8409464-CDS-H-paniculata_contig23876:3579..3758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23876 3580..3758 -
1691480965.282863-CDS-H-paniculata_contig23876:3579..37581691480965.282863-CDS-H-paniculata_contig23876:3579..3758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23876 3580..3758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23876.6455.1

>prot_H-paniculata_contig23876.6455.1 ID=prot_H-paniculata_contig23876.6455.1|Name=mRNA_H-paniculata_contig23876.6455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=325bp
WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLM
HFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLR
RLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAALQGGNFMG
MMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSVGTQILRSPLVFPAA
IGGFTSDWGWGAGGGRERGGEEERLRRGGGAYGGYRCGSSSSVLAGVVSR
SLIAPLWAHDLSADLTGIDGHAAEYLARWSTPAEKVIRTASKLPLPVPDP
AEADSTVNLMPELVSRLNRLRKSLR
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mRNA from alignment at H-paniculata_contig23876:312..3758-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23876.6455.1 ID=mRNA_H-paniculata_contig23876.6455.1|Name=mRNA_H-paniculata_contig23876.6455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3447bp|location=Sequence derived from alignment at H-paniculata_contig23876:312..3758- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTACCACCTTATCCTGGACGAAGCTCAGAACATCAAGAATTTCAAGAG CCAAAGGTGGCAAACGCTTCTGACTTTCAACTCTCAAAGACGCCTCCTGC TGACCGGAACTCCCCTCCAGAACAGCCTCATGGAGCTGTGGTCTCTCATG CACTTTCTCATGCCGCATGTGTTCCGAAGGTTAGTTAGTTAGTTAGTTAG TTAGTTCGTTCATTCGTTCGTTTGTTTGTTGGTTCGAATTTCGTTTTTTT TTTTTAGGAAGGTTACCTGGTATGAATGTTGTTTCTAATTTTCGCTTTTT TTTTTTTTTTCCATATCTTTCCCTAGACGCGAAAATTGAATTTTGTTTCT CTTTTTGTTTTTGGCTTGTTTTATTGAGAACATACTGTTAATGTCGCGTG TGGCACCGAAAAATTCGAACAGTTGAAGGAAAGCCACAGAGCGTGTTTTT TTTTTGTTTTTTGCCTATTTACTTATACGCTAACTTGCGCCCTTCCCAAC AACAACAAAATATACCATAGTTTTTATGCTTCGCTTTTTTTTTTCTCCTA CTTTCCTACTTTTAAAAAAAATTGCTGTTTAAAAAGGCGCCAATTGTGTC CAGCAATTTTCGTATGGAAAGTGATCGATGTTTCTTCCCGCACGATTGCC TCGTTCGAATAACGGACGTACTCGTTTTTTTTTTTGTTTTTTTTTTCGTA CCTCAGTCGGAAAGAGTTCAGCTATTGGTTCTCGCAGCCCCTTACGCATA TGGTGGAGGGCTCGAGGGAGCGAAACGACGATTTGATCCGCCGGTTACAC TCCGTCGTGAGGCCCTTCCTCCTGCGACGTCTCAAAAAGGTACATACAAA AACACACTTGACGGAAAAAGGGTAGGAACTGCTTGCTGTGTCCGTATAGG TAGCGGTGGCAGTCGCAGTCGACCTGTGACGAGACTCATGGAGGTTACCA ACGTCAGAAACATGTGATGAAATGGGAACACGACCTGTATCTACCTACCT ACGTGTGTATCCTTGTACTCCACTTCGCCGTCCGCAATGACTCAAAAGGG TACGAACAAAAACAAGTCATTGAATTGTGACCGTTTTTTTTTCTTTTTTT TTTCATTTGGGTAGCTTTGCAATCGACCCGAGACGGATAAGTTAAACAGG TATAGCCAAAAAAGAACGGTGTTGTGACTGTCTTGGGTCTTTTTTGGTCT TTGAGATCCACAGTGAATAGCGTTGGAATCGACCTGCGACGACTCAAAAC AGGCACCAAAAGCAAACATATCGTTTAATTGTAACTGGCTGTATCCATCT GGATAGCGTTGCTGTCCACCTGCCACGACTCAGAACAGGTACAGGAAAAA AAAAGAAGAAAAAAGCGCGTGATTGTATACAAGTTAACTGTCTTTCGTTC AATCCATGGGGGGGGTAGCGTTCGTATGTTACCATTATGCTACGTTTTCA TTTTTCTGAAGCTTTGAACGACAGATCTTCCGTCGGCCCCTAACATTATT AATCAGAACAAAAAATATACATATTGTTGGACGAAAATGATGACAGGATG TTGAGAAACAGCTCCCCGGAAAGCACGAGCACGTGGTGATGTGCAAGCTC AGCCGACGACAGGCGACGCTGTACGAGGAGTTCATGTCGAGGTCGTCCAC ACGTGCGGCGCTGCAGGGCGGCAACTTCATGGGGATGATGAATATTCTCA TGCAGCTAAGAAAGGTAAATAAAGCGGGAGAGAGGGAAAGCACACACATG AACACATATATAAATAGTGATTTTGTGATGATGCACCTGTACCTTTTTTT TTTTTTTCAGTGTTGTGAAATCAACGTGTAGTGCTGGTAATAGAGAAATT TTGTTGAAAAATTCGTCTTTTCTGCCGTGTGGATGTAGCTCAGGCCATGA CTTGACCAAAAAGAAACGAGGTAATTGTGTAGCGGTTTTTCAGAGCTCCT CCAAGGAGTGTATGTGCAGTTTCGATTGGCGCAATTTCCATGGGCAAAAG GCGGACCCCTCGAAAGTTGATTTTGCCTCCAGAGTAACTTTGGATTTATC GATTGGGTTAAACATGGAAGCCGACCTTTCACTGAGGTGATTTGGGAGCG TGAAGGGGAACATACGAGGCTTATTGTTACGTAGGAGCGACCAAAGGTGG TGTGGTGAAAGGCATGGTTGGTTCCTTGGAATGTGGTTTGTTGGCGTGCG CACTTCAGTCTCTCTATCGTGGCGAATACTTTTATCAAGTGAACATGTAC TTTGGATGTCAGGTATTCATTCGGTTTTGACCTCGCCCGTCCCCCATCCC CCATCCCACTCTCCCCGCTCGATCTCGCACGCGCATAAACTGCCTTTCGC CAGGTTTGCAACCACCCTGACCTCTTCGAGGCCAGACAGATCGACAGCCC GCTTGTGCTGCCCGCCTTGGAGCTGAGTGTGGGAACGCAGATATTGCGTT CTCCTCTGGTGTTTCCAGCGGCGATCGGGGGCTTCACCTCGGACTGGGGA TGGGGGGCAGGGGGGGGGCGAGAAAGAGGAGGAGAAGAAGAGAGATTACG ACGCGGGGGGGGGGCATATGGGGGTTATAGATGTGGGAGTTCGAGCAGCG TGTTAGCGGGCGTGGTTTCTCGAAGCTTGATAGCTCCTCTCTGGGCACAC GACTTGAGCGGTGAGGGCGGGAGGGCGGAGGGTCGTTCATATAATACCTT CATTTGATCTATTTTGAGGTTATGCAGCTAAATATACCCTTCAATTGTGT ATGTATCCTCATAAGCAAAATCCGATCAAGTTAAGGGTGGTTGTTGCACG ATCGGTTTGAGCTGGAGCTCGCGCATGCACAGAATGTGTATTTGTATTCG TGGGTGTTTTGCCCTCTTGCTAGTGTCGTGGTTATGGTGACTGTCGCCTG TGCGGTTTCAGTGACGCTTTTGAGTTAGCATGGGAAGTCGTGGTGGAGTG GTCTTTTATCACTGATTTGCCTGCTGGCATTTTGCTTGCGTTATTCTTTC GTTGCTACTAAGTATCCCTTTTTTGTTGGATGAAAAAAAAAAATGGAAAA TTGAACAGCTGACCTGACGGGGATTGACGGCCACGCAGCGGAGTACCTGG CGCGGTGGTCCACTCCGGCGGAGAAGGTGATCAGAACGGCGAGCAAGCTG CCCCTGCCGGTGCCCGATCCCGCCGAGGTGAGGCTTTTGTTTTAGCTGTG GTAGAGGAAGGAGCATATTTAAAGCTTCGAAGGTGAACCGGCGATTCTGA TTCGATCAGGGGTGAACTGGACGTTGTTGATGATGATAATGGTGCTGTTG CTGTTGTCTGCATGATTTAACCGCCCCTGTTGCCCCCGCATGCGTAATAA CGTTTTATCTTTTTTCTATCCTTGGCAGGCGGACTCCACCGTCAACTTGA TGCCGGAGCTTGTCTCGCGGCTCAATCGACTGCGAAAGTCCTTGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig23876:312..3758-

>mRNA_H-paniculata_contig23876.6455.1 ID=mRNA_H-paniculata_contig23876.6455.1|Name=mRNA_H-paniculata_contig23876.6455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at H-paniculata_contig23876:312..3758- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTACCACCTTATCCTGGACGAAGCTCAGAACATCAAGAATTTCAAGAG
CCAAAGGTGGCAAACGCTTCTGACTTTCAACTCTCAAAGACGCCTCCTGC
TGACCGGAACTCCCCTCCAGAACAGCCTCATGGAGCTGTGGTCTCTCATG
CACTTTCTCATGCCGCATGTGTTCCGAAGTGGTACCACCTTATCCTGGAC
GAAGCTCAGAACATCAAGAATTTCAAGAGCCAAAGGTGGCAAACGCTTCT
GACTTTCAACTCTCAAAGACGCCTCCTGCTGACCGGAACTCCCCTCCAGA
ACAGCCTCATGGAGCTGTGGTCTCTCATGCACTTTCTCATGCCGCATGTG
TTCCGAAGTCGGAAAGAGTTCAGCTATTGGTTCTCGCAGCCCCTTACGCA
TATGGTGGAGGGCTCGAGGGAGCGAAACGACGATTTGATCCGCCGGTTAC
ACTCCGTCGTGAGGCCCTTCCTCCTGCGACGTCTCAAAAAGTCGGAAAGA
GTTCAGCTATTGGTTCTCGCAGCCCCTTACGCATATGGTGGAGGGCTCGA
GGGAGCGAAACGACGATTTGATCCGCCGGTTACACTCCGTCGTGAGGCCC
TTCCTCCTGCGACGTCTCAAAAAGGATGTTGAGAAACAGCTCCCCGGAAA
GCACGAGCACGTGGTGATGTGCAAGCTCAGCCGACGACAGGCGACGCTGT
ACGAGGAGTTCATGTCGAGGTCGTCCACACGTGCGGCGCTGCAGGGCGGC
AACTTCATGGGGATGATGAATATTCTCATGCAGCTAAGAAAGGATGTTGA
GAAACAGCTCCCCGGAAAGCACGAGCACGTGGTGATGTGCAAGCTCAGCC
GACGACAGGCGACGCTGTACGAGGAGTTCATGTCGAGGTCGTCCACACGT
GCGGCGCTGCAGGGCGGCAACTTCATGGGGATGATGAATATTCTCATGCA
GCTAAGAAAGGTTTGCAACCACCCTGACCTCTTCGAGGCCAGACAGATCG
ACAGCCCGCTTGTGCTGCCCGCCTTGGAGCTGAGTGTGGGAACGCAGATA
TTGCGTTCTCCTCTGGTGTTTCCAGCGGCGATCGGGGGCTTCACCTCGGA
CTGGGGATGGGGGGCAGGGGGGGGGCGAGAAAGAGGAGGAGAAGAAGAGA
GATTACGACGCGGGGGGGGGGCATATGGGGGTTATAGATGTGGGAGTTCG
AGCAGCGTGTTAGCGGGCGTGGTTTCTCGAAGCTTGATAGCTCCTCTCTG
GGCACACGACTTGAGCGGTTTGCAACCACCCTGACCTCTTCGAGGCCAGA
CAGATCGACAGCCCGCTTGTGCTGCCCGCCTTGGAGCTGAGTGTGGGAAC
GCAGATATTGCGTTCTCCTCTGGTGTTTCCAGCGGCGATCGGGGGCTTCA
CCTCGGACTGGGGATGGGGGGCAGGGGGGGGGCGAGAAAGAGGAGGAGAA
GAAGAGAGATTACGACGCGGGGGGGGGGCATATGGGGGTTATAGATGTGG
GAGTTCGAGCAGCGTGTTAGCGGGCGTGGTTTCTCGAAGCTTGATAGCTC
CTCTCTGGGCACACGACTTGAGCGCTGACCTGACGGGGATTGACGGCCAC
GCAGCGGAGTACCTGGCGCGGTGGTCCACTCCGGCGGAGAAGGTGATCAG
AACGGCGAGCAAGCTGCCCCTGCCGGTGCCCGATCCCGCCGAGCTGACCT
GACGGGGATTGACGGCCACGCAGCGGAGTACCTGGCGCGGTGGTCCACTC
CGGCGGAGAAGGTGATCAGAACGGCGAGCAAGCTGCCCCTGCCGGTGCCC
GATCCCGCCGAGGCGGACTCCACCGTCAACTTGATGCCGGAGCTTGTCTC
GCGGCTCAATCGACTGCGAAAGTCCTTGAGGGCGGACTCCACCGTCAACT
TGATGCCGGAGCTTGTCTCGCGGCTCAATCGACTGCGAAAGTCCTTGAGG
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