mRNA_H-paniculata_contig23876.6455.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: D7FTP0_ECTSI (Similar to E1a binding protein P400 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTP0_ECTSI) HSP 1 Score: 443 bits (1139), Expect = 2.060e-138 Identity = 243/344 (70.64%), Postives = 266/344 (77.33%), Query Frame = 1
Query: 1 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSVGTQILRS----------PLVFPAAIGGF---------TSDWGWGAGGGRERGGEXXRLRRGGGAYGGYRCGSSSSVLAGVVSRSLIAPLWAHDLSADLTGIDGHAAEYLARWSTPAEKVIRTASKLPLPVPDPAEADSTVNLMPELVSRLNRLRKSLR 975
WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPL+HMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMC+LSRRQA+LYEEFM+RSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSP VLP L+L VGT++LRS P FP GG T+ G+ G G G GS S GV SRSLIAPLWAHDL L G+D + E L+R +TPAE V++ SKLPL +PDP + D ++NLMP+++ RL RLRK+LR
Sbjct: 1187 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLSHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCRLSRRQASLYEEFMARSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPFVLPPLDLGVGTRVLRSRSSSSSSWMPPCGFPTRFGGVLFEGTATAATAAXXXXXXXXXXXXGKLGSGEDGSGEKAGAGVGSRRSPDGGV-SRSLIAPLWAHDLRDGLPGLDVLSTELLSRRATPAEDVLKMPSKLPLCIPDPTQVDKSLNLMPQVLYRLTRLRKTLR 1529
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: A0A6H5KKD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD6_9PHAE) HSP 1 Score: 392 bits (1006), Expect = 1.510e-120 Identity = 236/406 (58.13%), Postives = 251/406 (61.82%), Query Frame = 1
Query: 1 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRS--------------------------------------------------------------------------------------RKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSVGTQILRS-----------PLVFPAAIGGFTSDWGWGA------GGGRERGGEXXRLRRGGGAYGGYRCGSSSSVLAGVVSRSLIAPLWAHDLSADLTGIDGHAAEYLARWSTPAEKVIRTASKLPLPVPDPAEA 909
WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRS RKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMC+LSRRQA+LYEEFM+RSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSP VLP L+L VGTQ+LRS P FP GG + + A G G + GGE R GS S GV SRSLIAPLWAHDL DL G+D + E L+R +TPAE V++ SKLPL +PDP A
Sbjct: 1501 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSEDSDGGICMCRGRSFRSTKTRASSTSTSSHYHFPRIPPAATSNTAPPLPYLFPFPLDCHVCTSAPVCRYGGDSSTGGRYSSFFCRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCRLSRRQASLYEEFMARSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPFVLPPLDLGVGTQVLRSRSSSSSSSWIPPCGFPTRFGGVSFEGTQTAAADGKLGSGEDGGGENARAG----------VGSRRSPDGGV-SRSLIAPLWAHDLRDDLPGLDVLSTELLSRRATPAEDVLKMPSKLPLCIPDPTTA 1895
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: A0A7R9ZI12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZI12_9STRA) HSP 1 Score: 292 bits (748), Expect = 1.080e-93 Identity = 144/212 (67.92%), Postives = 171/212 (80.66%), Query Frame = 1
Query: 1 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAALQ-GGNFMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSV-------------GTQILRSPLVFP 594
WY+LILDEAQNIKNF+SQRWQTL+ FN+QRRLLLTGTPLQN+LMELWSL+HFLMPH+FRSRKEFSYWFS P+ +VEG+ RNDDLI RLH ++RPF+LRRLKKDVE Q+PGK+EH+V C++SRRQ LYEEFM+RSSTR ALQ GGN+MGMMN+LMQLRKVCNHPDLFE R + +P + L + G ++L S LV P
Sbjct: 123 WYYLILDEAQNIKNFQSQRWQTLVNFNTQRRLLLTGTPLQNNLMELWSLLHFLMPHIFRSRKEFSYWFSNPMNSIVEGNAARNDDLIGRLHGIIRPFVLRRLKKDVETQMPGKYEHIVKCQMSRRQMFLYEEFMARSSTRMALQKGGNYMGMMNVLMQLRKVCNHPDLFEPRTVITPFFMEPLNFATAACVVGPVGAAESGGELLSSRLVHP 334
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: A0A835ZKJ3_9STRA (SNF2 family N-terminal domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKJ3_9STRA) HSP 1 Score: 301 bits (770), Expect = 3.450e-93 Identity = 153/193 (79.27%), Postives = 166/193 (86.01%), Query Frame = 1
Query: 1 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAALQGGN-FMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSVGTQILR 576
WYHLILDEA NIKNFKS RWQTLLTFNSQRRLLLTGTPLQN+LMELWSLMHFLMPHVF SR+EF+YWFSQPLT MVEGSR + +L+ RLHSV+RPFLLRRLKK+V KQLP K EHVVMC+LSRRQA LYEEFMSRS+TRAAL GG FMGMMN+LMQLRKVCNHPDLFE R SP V L + GT I+R
Sbjct: 524 WYHLILDEAHNIKNFKSLRWQTLLTFNSQRRLLLTGTPLQNNLMELWSLMHFLMPHVFTSRREFAYWFSQPLTSMVEGSRGISGELVSRLHSVMRPFLLRRLKKEVAKQLPAKVEHVVMCRLSRRQAQLYEEFMSRSATRAALAGGGQFMGMMNVLMQLRKVCNHPDLFEPRTTASPFVAETLRYAPGTLIVR 716
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: A0A7S3UX21_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX21_HETAK) HSP 1 Score: 288 bits (738), Expect = 2.050e-92 Identity = 143/195 (73.33%), Postives = 163/195 (83.59%), Query Frame = 1
Query: 1 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAALQGG-NFMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSVGTQILRSP 582
WY+LILDEA NIKNFKSQRWQT+L F++ RRLLLTGTPLQN+LMELWSLMHFLMPH+FRSRKEFSYWFS PL +MVEG + ++DL+RRLH ++RPFLLRRLK DVEKQLPGK EHVV+ LS+RQ LYEEFM+RSSTRAAL GG NFMGMMN+LMQLRKVCNHPDLFE R +P +P+L G L P
Sbjct: 92 WYYLILDEAHNIKNFKSQRWQTMLNFSTARRLLLTGTPLQNNLMELWSLMHFLMPHIFRSRKEFSYWFSNPLNNMVEGGQAVSEDLVRRLHQIMRPFLLRRLKCDVEKQLPGKFEHVVLVTLSKRQQQLYEEFMARSSTRAALAGGGNFMGMMNVLMQLRKVCNHPDLFEPRPTRTPFFMPSLASLAGLPALVMP 286
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: A0A7S2XTX0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTX0_9STRA) HSP 1 Score: 289 bits (739), Expect = 2.690e-92 Identity = 141/199 (70.85%), Postives = 169/199 (84.92%), Query Frame = 1
Query: 7 HLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAAL-QGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSVGTQIL-----RSPL 585
+LILDEAQNIKNF+SQRWQTL+ FN+QRRLLLTGTPLQN+LMELWSL+HFLMPHVFRSRKEFSYWFS P+ +++EG+ RNDDLI RLH ++RPF+LRRLKKDVE Q+PGK+EH+V C+LSRRQ LYEEFM+RSSTR AL +GGNFMGMMN+LMQLRKVCNHPDLFE R + +P V L ++ ++ +SPL
Sbjct: 1 YLILDEAQNIKNFQSQRWQTLVNFNTQRRLLLTGTPLQNNLMELWSLLHFLMPHVFRSRKEFSYWFSNPMNNIIEGNTSRNDDLIGRLHGIIRPFVLRRLKKDVETQMPGKYEHIVKCQLSRRQMFLYEEFMARSSTRVALNKGGNFMGMMNVLMQLRKVCNHPDLFEPRSVITPFVTEPLAITTAACVIGIMDHQSPL 199
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: A0A4D9D1C0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1C0_9STRA) HSP 1 Score: 306 bits (784), Expect = 8.630e-91 Identity = 152/186 (81.72%), Postives = 164/186 (88.17%), Query Frame = 1
Query: 1 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSV 558
W+ LILDEA NIKNFKSQRWQTLLTFNS RRLLLTGTPLQN LMELWSLMHFLMPH+FRSRKEFSYWFS PL MV+G+R +D LIRRLH+++RPFLLRRLKKDVEKQLPGK EHVV+C LSRRQA LYEEFM+RSSTRAAL GGNFMGMMN+LMQLRKVCNHPDLFEAR I SP + L L V
Sbjct: 517 WFFLILDEAHNIKNFKSQRWQTLLTFNSHRRLLLTGTPLQNDLMELWSLMHFLMPHLFRSRKEFSYWFSNPLNSMVQGARALSDGLIRRLHTIMRPFLLRRLKKDVEKQLPGKFEHVVLCPLSRRQAHLYEEFMARSSTRAALAGGNFMGMMNVLMQLRKVCNHPDLFEARPIRSPYAMDPLALPV 702
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: A0A1E7FQV3_9STRA (SNF2_N-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQV3_9STRA) HSP 1 Score: 296 bits (757), Expect = 3.970e-90 Identity = 140/187 (74.87%), Postives = 168/187 (89.84%), Query Frame = 1
Query: 1 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAALQ-GGNFMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSV 558
WY+LILDEAQNIKNF+SQRWQTL+ FN+QRRLLLTGTPLQNSLMELWSL+HFLMP++F+SRKEFSYWFS P+ +M+EG RNDD+I+RLH ++RPF+LRRLKKDVE Q+PGK EH+V C+LSRRQ TLYEEF+SRSSTR AL+ GGNFMGMM +LMQLRKVCNHPDLFE R + +P +LP++ +SV
Sbjct: 302 WYYLILDEAQNIKNFQSQRWQTLINFNTQRRLLLTGTPLQNSLMELWSLLHFLMPYIFKSRKEFSYWFSNPMNNMIEGG-NRNDDVIKRLHGIIRPFVLRRLKKDVETQMPGKFEHIVKCQLSRRQMTLYEEFLSRSSTRKALKKGGNFMGMMTVLMQLRKVCNHPDLFEPRSVITPFILPSIPISV 487
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: A0A397DHD3_9STRA (Helicase ATP-binding domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DHD3_9STRA) HSP 1 Score: 284 bits (726), Expect = 5.780e-89 Identity = 136/185 (73.51%), Postives = 159/185 (85.95%), Query Frame = 1
Query: 1 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAALQGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELS 555
WY+LILDEA NIKN+KSQRWQTLLTFN+QRRLLLTGTPLQN+LMELW+LMHFLMPH+FRSR +FS+WFS P+ MVEG ND L+ RLH+++RPF+LRRLKKDV KQ+PGK EHVV+C LS+RQ LYE+FM+RSSTR AL GGNFMGMMN+LMQLRKVCNHPDLFEAR + P + L +S
Sbjct: 62 WYYLILDEAHNIKNWKSQRWQTLLTFNTQRRLLLTGTPLQNNLMELWALMHFLMPHLFRSRAQFSHWFSTPMNAMVEGEAAVNDQLVSRLHNIIRPFVLRRLKKDVAKQMPGKFEHVVVCSLSKRQRFLYEDFMARSSTRKALSGGNFMGMMNVLMQLRKVCNHPDLFEARPVLCPFDMAPLTVS 246
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Match: A0A448ZDW5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDW5_9STRA) HSP 1 Score: 296 bits (759), Expect = 1.910e-87 Identity = 137/187 (73.26%), Postives = 170/187 (90.91%), Query Frame = 1
Query: 1 WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFRSRKEFSYWFSQPLTHMVEGSRERNDDLIRRLHSVVRPFLLRRLKKDVEKQLPGKHEHVVMCKLSRRQATLYEEFMSRSSTRAAL-QGGNFMGMMNILMQLRKVCNHPDLFEARQIDSPLVLPALELSV 558
WY+LILDEAQNIKNF+SQRWQTL+ FN+QRRLLLTGTPLQN+LMELWSL+HFLMP++F+SRKEFSYWFS P+ +++EG+ +N D+I+RLH ++RPF+LRRLKK+VEKQ+PGK EH+V C+LSRRQ TLYEEF+SRSSTR AL QGGNFMGMMN+LMQLRKVCNHPDLFE R + +P VLP++ +++
Sbjct: 1094 WYYLILDEAQNIKNFQSQRWQTLINFNTQRRLLLTGTPLQNNLMELWSLLHFLMPYIFKSRKEFSYWFSNPMNNIIEGTANQNADVIKRLHGIIRPFVLRRLKKEVEKQMPGKFEHIVKCQLSRRQMTLYEEFLSRSSTRQALKQGGNFMGMMNVLMQLRKVCNHPDLFEPRSVVTPFVLPSISIAI 1280 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23876.6455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig23876.6455.1 >prot_H-paniculata_contig23876.6455.1 ID=prot_H-paniculata_contig23876.6455.1|Name=mRNA_H-paniculata_contig23876.6455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=325bp WYHLILDEAQNIKNFKSQRWQTLLTFNSQRRLLLTGTPLQNSLMELWSLMback to top mRNA from alignment at H-paniculata_contig23876:312..3758- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig23876.6455.1 ID=mRNA_H-paniculata_contig23876.6455.1|Name=mRNA_H-paniculata_contig23876.6455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3447bp|location=Sequence derived from alignment at H-paniculata_contig23876:312..3758- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig23876:312..3758- >mRNA_H-paniculata_contig23876.6455.1 ID=mRNA_H-paniculata_contig23876.6455.1|Name=mRNA_H-paniculata_contig23876.6455.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at H-paniculata_contig23876:312..3758- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |