prot_H-paniculata_contig2385.6448.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2385.6448.1
Unique Nameprot_H-paniculata_contig2385.6448.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length187
Homology
BLAST of mRNA_H-paniculata_contig2385.6448.1 vs. uniprot
Match: D8LNC5_ECTSI (Nuclear nucleic acid-binding protein C1D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC5_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 3.170e-53
Identity = 92/129 (71.32%), Postives = 107/129 (82.95%), Query Frame = 0
Query:    1 MSREEVGACVSPADRAKLNLQMAYGVTSLFYMFLKTQGVSPSNHPVKAELDRIKGYFGRLQKVGKPPEERKLKIDAEASRRFINSALSGDNVWRDAQARNGSNSLPGSSAGAGIGRSNPAGQPVNNSAQ 129
            MSREEVG CVS  DRA LNLQ+AYGV+SLFYMFLKTQGVSPS HPVK ELDRI+GYFGRL+ VGKPPE+R LK+D +ASRRFIN+ALSGD+VW++A+  +   S     A AGIGR+NPAGQP + SAQ
Sbjct:   34 MSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNVGKPPEQRTLKVDQDASRRFINAALSGDSVWQNAKGTD-PKSAQQKRASAGIGRANPAGQPEDFSAQ 161          
BLAST of mRNA_H-paniculata_contig2385.6448.1 vs. uniprot
Match: A0A6B2LJS6_9EUKA (Nuclear nucleic acid-binding protein C1D n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LJS6_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 6.910e-18
Identity = 39/78 (50.00%), Postives = 59/78 (75.64%), Query Frame = 0
Query:   10 VSPADRAKLNLQMAYGVTSLFYMFLKTQGVSPSNHPVKAELDRIKGYFGRLQKVGKPPEERKLKIDAEASRRFINSAL 87
            ++P D AKLN+ +AY   +LFY+FLKTQGV  ++HPV  E++++K Y  +L+KV + PE  K++I+ EASRR I++AL
Sbjct:   23 LTPLDNAKLNITLAYTTYTLFYLFLKTQGVDTTDHPVINEINKVKSYIQKLKKVSEAPEGPKVRINQEASRRVISAAL 100          
BLAST of mRNA_H-paniculata_contig2385.6448.1 vs. uniprot
Match: A0A2D4BWA5_PYTIN (Nuclear nucleic acid-binding protein C1D n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWA5_PYTIN)

HSP 1 Score: 85.5 bits (210), Expect = 1.430e-17
Identity = 45/99 (45.45%), Postives = 68/99 (68.69%), Query Frame = 0
Query:    2 SREEVGACVSPADRAKLNLQMAYGVTSLFYMFLKTQGVSPSN---HPVKAELDRIKGYFGRLQKVGKPPEERKLKIDAEASRRFINSALSGDNVWRDAQ 97
            S EE  A +SP ++AK+ + +AY + +L Y++LKTQGVS  +     VK ELDR+KG+  +++   +  +   LK+D EAS+RFIN+ALSGD V+ DA+
Sbjct:   30 SLEEFLAELSPIEKAKVQVSLAYSINALLYVYLKTQGVSSKDIRQTHVKQELDRVKGFIKKIKDTEELAKGPTLKLDKEASQRFINNALSGDQVYVDAK 128          
BLAST of mRNA_H-paniculata_contig2385.6448.1 vs. uniprot
Match: A0A485LE36_9STRA (Nuclear nucleic acid-binding protein C1D n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LE36_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.390e-17
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 0
Query:    4 EEVGACVSPADRAKLNLQMAYGVTSLFYMFLKTQGVSPSN---HPVKAELDRIKGYFGRLQKVGKPPEERKLKIDAEASRRFINSALSGDNVWRDA 96
            EE+ A + P D+AK+ + +AY + +L Y+ LK QGVS  +     +K ELDR+KGY  +++   +  + RK +IDAEA+ RFIN ALS D V+ DA
Sbjct:   28 EELTATLPPIDKAKVQVGLAYSINALLYVLLKAQGVSSKDIRTTQIKQELDRVKGYIQKIKYSEEMAKGRKARIDAEAAGRFINHALSSDQVYTDA 123          
BLAST of mRNA_H-paniculata_contig2385.6448.1 vs. uniprot
Match: A0A835ZH36_9STRA (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH36_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.520e-17
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 0
Query:    2 SREEVGACVSPADRAKLNLQMAYGVTSLFYMFLKTQGVSPSNHPVKAELDRIKGYFGRLQKVGKPPEERKLKIDAEASRRFINSALSGD 90
            +REE+ + V+  + AKLN  MAYG++SL+YM L+T+G   ++H VK ELDRIKG  GRLQ V  P  +R + ++  A++RFI   L+G+
Sbjct:   46 TREELASQVTKQEMAKLNAAMAYGISSLYYMLLRTKGCDTTDHGVKKELDRIKGAMGRLQMVKVP--QRGIVVNVAAAQRFIKHGLAGN 132          
BLAST of mRNA_H-paniculata_contig2385.6448.1 vs. uniprot
Match: UPI0009E49D50 (nuclear nucleic acid-binding protein C1D-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E49D50)

HSP 1 Score: 82.8 bits (203), Expect = 2.420e-16
Identity = 38/78 (48.72%), Postives = 58/78 (74.36%), Query Frame = 0
Query:   10 VSPADRAKLNLQMAYGVTSLFYMFLKTQGVSPSNHPVKAELDRIKGYFGRLQKVGKPPEERKLKIDAEASRRFINSAL 87
            ++P   AKL+L +AY + S+F+M+L TQGV+P  HPVK+ELDRIK Y G++++  +  +E   +ID EA++RF+ SAL
Sbjct:   58 MNPLQSAKLDLVVAYAINSMFWMYLTTQGVNPRQHPVKSELDRIKKYMGKVKEATEK-KEASARIDKEAAKRFVKSAL 134          
BLAST of mRNA_H-paniculata_contig2385.6448.1 vs. uniprot
Match: A0A8K1CPI1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPI1_PYTOL)

HSP 1 Score: 81.6 bits (200), Expect = 3.320e-16
Identity = 41/96 (42.71%), Postives = 65/96 (67.71%), Query Frame = 0
Query:    4 EEVGACVSPADRAKLNLQMAYGVTSLFYMFLKTQGVSPSN---HPVKAELDRIKGYFGRLQKVGKPPEERKLKIDAEASRRFINSALSGDNVWRDA 96
            +E  A +SP D+AK+ + +AY + +L Y++LKTQGVS  +     VK EL+R+KG+  +++   +  +   LK+D EAS+RF+N+ALS D V+ DA
Sbjct:   32 DEFLAELSPVDKAKVQVSLAYSINALLYVYLKTQGVSSKDIRQTHVKQELERVKGFIKKIKDTEELAKGPSLKLDKEASKRFVNNALSRDQVYTDA 127          
BLAST of mRNA_H-paniculata_contig2385.6448.1 vs. uniprot
Match: A0A7S4U7T0_GUITH (Nuclear nucleic acid-binding protein C1D n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4U7T0_GUITH)

HSP 1 Score: 82.0 bits (201), Expect = 4.100e-16
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 0
Query:    4 EEVGACVSPADRAKLNLQMAYGVTSLFYMFLKTQGVSPSNHPVKAELDRIKGYFGRLQKV--GKPPEERKLKIDAEASRRFINSALSGD 90
            + + AC+ P  RAKLNL +AY + SLF+++LKTQG++   H V  EL R+K Y  +L+     +  E+ KLK++ +A+ RFI + LSG+
Sbjct:   65 DTLNACLEPVQRAKLNLMIAYTIDSLFFLYLKTQGIATEEHQVNEELARVKSYMSKLKDATAAQENEKSKLKLNKDAAARFIKAGLSGN 153          
BLAST of mRNA_H-paniculata_contig2385.6448.1 vs. uniprot
Match: A0A0L0GDR7_9EUKA (Nuclear nucleic acid-binding protein C1D n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GDR7_9EUKA)

HSP 1 Score: 81.6 bits (200), Expect = 5.170e-16
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 0
Query:    2 SREEVGACVSPADRAKLNLQMAYGVTSLFYMFLKTQGVSPSNHPVKAELDRIKGYFGRLQKVGKPPEERKLKIDAEASRRFINSAL 87
            ++EE+ A ++PA+RA+L L MAY  +S+F+M+L T GV P  H +K ELDR+K Y GRL++   P      K+D  A+ RFI   L
Sbjct:   37 NQEELKAKLTPAERAQLELAMAYAASSMFWMYLTTTGVDPRTHAIKGELDRVKAYMGRLKEATAPKNA--AKLDMAAAGRFIRGGL 120          
BLAST of mRNA_H-paniculata_contig2385.6448.1 vs. uniprot
Match: A0A024UHM0_9STRA (Nuclear nucleic acid-binding protein C1D n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UHM0_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.250e-16
Identity = 42/98 (42.86%), Postives = 65/98 (66.33%), Query Frame = 0
Query:    4 EEVGACVSPADRAKLNLQMAYGVTSLFYMFLKTQGVSPSNH---PVKAELDRIKGYFGRLQKVGKPPEERKLKIDAEASRRFINSALSGDNVWRDAQA 98
            +E+ A ++P D+AK+ + +AY + +L Y+ LK QGVS  +     VK ELDR+KGY  +++   +  + RK ++DAEA+ RFIN ALS D V+ +A A
Sbjct:   28 DELTAELAPIDKAKVQVGLAYSINALLYVLLKVQGVSSKDGRQTQVKQELDRVKGYVQKIKYSEEMAKGRKTRVDAEAAGRFINHALSSDQVYAEAVA 125          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2385.6448.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNC5_ECTSI3.170e-5371.32Nuclear nucleic acid-binding protein C1D n=1 Tax=E... [more]
A0A6B2LJS6_9EUKA6.910e-1850.00Nuclear nucleic acid-binding protein C1D n=1 Tax=A... [more]
A0A2D4BWA5_PYTIN1.430e-1745.45Nuclear nucleic acid-binding protein C1D n=2 Tax=P... [more]
A0A485LE36_9STRA5.390e-1744.79Nuclear nucleic acid-binding protein C1D n=1 Tax=A... [more]
A0A835ZH36_9STRA5.520e-1747.19Nuclear nucleic acid-binding protein C1D (Fragment... [more]
UPI0009E49D502.420e-1648.72nuclear nucleic acid-binding protein C1D-like n=1 ... [more]
A0A8K1CPI1_PYTOL3.320e-1642.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S4U7T0_GUITH4.100e-1642.70Nuclear nucleic acid-binding protein C1D n=1 Tax=G... [more]
A0A0L0GDR7_9EUKA5.170e-1645.35Nuclear nucleic acid-binding protein C1D n=1 Tax=S... [more]
A0A024UHM0_9STRA6.250e-1642.86Nuclear nucleic acid-binding protein C1D n=1 Tax=A... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007146Sas10/Utp3/C1DPFAMPF04000Sas10_Utp3coord: 13..59
e-value: 2.5E-9
score: 37.6
IPR011082Exosome-associated factor Rrp47/DNA strand repair C1DPANTHERPTHR15341SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSORcoord: 2..163
NoneNo IPR availablePANTHERPTHR15341:SF3NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1Dcoord: 2..163

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2385contigH-paniculata_contig2385:5017..6207 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2385.6448.1mRNA_H-paniculata_contig2385.6448.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2385 4346..8785 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2385.6448.1 ID=prot_H-paniculata_contig2385.6448.1|Name=mRNA_H-paniculata_contig2385.6448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp
MSREEVGACVSPADRAKLNLQMAYGVTSLFYMFLKTQGVSPSNHPVKAEL
DRIKGYFGRLQKVGKPPEERKLKIDAEASRRFINSALSGDNVWRDAQARN
GSNSLPGSSAGAGIGRSNPAGQPVNNSAQDGDKFVFVGIPLGTGRKKRGL
LSGRAKDDNGDADDDDSSKKATNKKSKHNVSRSHKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007146Sas10/Utp3/C1D
IPR011082Exosome-assoc_fac/DNA_repair