prot_H-paniculata_contig23833.6442.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig23833.6442.1
Unique Nameprot_H-paniculata_contig23833.6442.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length147
Homology
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A7D9L0S1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9L0S1_PARCT)

HSP 1 Score: 92.4 bits (228), Expect = 2.090e-20
Identity = 50/145 (34.48%), Postives = 85/145 (58.62%), Query Frame = 0
Query:    1 MSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPF-VRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGR-RENVDEFKHNISQRCRMRDFGSCA 143
            M+++R +  LA + +  +  M+V  AYLNAP++ EL+++ P  F+   +D  + V +LRKSLY L Q+ R+WN+ L   LV  G  +  +DSC+Y      G++  +V ++ DD+ IA      +   K N+S+R +M+D G  +
Sbjct:   71 MTSIRILMQLAMQYNLTIHQMDVKTAYLNAPIDCELYVEQPEGFTMTGKDGEYLVYKLRKSLYGLKQSGRNWNSVLHSHLVSEGFIQSQSDSCVYTKIS--GKSMTIVIIWVDDIIIASNCTVTLTNVKGNLSKRFQMKDMGKLS 213          
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A2K3MSU0_TRIPR (Copia-type polyprotein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MSU0_TRIPR)

HSP 1 Score: 95.5 bits (236), Expect = 4.830e-20
Identity = 48/141 (34.04%), Postives = 86/141 (60.99%), Query Frame = 0
Query:    1 MSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRREN-VDEFKHNISQRCRMRDFG 140
            M T+R V ++A  ND+ +  M+V +A+LN P+++E+++  PP F   +++   V RL+K+LY L Q  R+WN  +  FL+ IG E+  T+  +Y+ + D  +  +++ +Y DDL I G  ++ + EFK ++ +   M D G
Sbjct:  923 METIRLVTAIANINDWPMYQMDVKSAFLNGPIDEEVYVAQPPGFKVKNQESK-VYRLKKALYGLKQAPRAWNKRMDKFLIEIGFEKCVTEHGVYVKKSDT-KGIIVMCLYVDDLLITGSNDSYIGEFKSDLKKEFEMTDLG 1061          
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A6S7IT23_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IT23_PARCT)

HSP 1 Score: 94.4 bits (233), Expect = 1.150e-19
Identity = 52/142 (36.62%), Postives = 85/142 (59.86%), Query Frame = 0
Query:    1 MSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPF-VRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRRE-NVDEFKHNISQRCRMRDFG 140
            ++++R +  LA + D E+  M+V  AYLNAPV+ EL+I+ P  F   S      V +L KSLY L Q+ R+WN+ L  FL   G+ +  +D C+YI + +G +T LL+  + DD+ IA     ++ + K ++S + +M+D G
Sbjct:  303 ITSIRMLMQLALDLDMEVHQMDVKTAYLNAPVDCELYIEQPEGFVKHSESGEMLVCKLNKSLYGLKQSGRNWNHMLHTFLTSKGITQLVSDPCVYIKKQNGKKTILLI--WVDDIIIASNSTPSLKQVKDDLSCKFKMKDLG 442          
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A7D9JQ57_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JQ57_PARCT)

HSP 1 Score: 90.1 bits (222), Expect = 2.020e-19
Identity = 49/142 (34.51%), Postives = 81/142 (57.04%), Query Frame = 0
Query:    1 MSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIP-FVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRRENV-DEFKHNISQRCRMRDFG 140
            MS++R +   A +ND  +  M+V  AYLNAP++ E+FI+ P  +    ++    V +L KSLY L Q+ R+WNN L D+++     +   D C+YI R+ G     ++ ++ DDL I+   E +    K ++S + RM+D G
Sbjct:   56 MSSIRILLQQAIQNDMLVHQMDVKTAYLNAPIDCEIFIEQPEGYERVGQNGERLVCKLNKSLYGLKQSGRNWNNMLHDYVMKESFTQSLADPCVYI-RNGGTNECTIIIIWVDDLIISASHEILLQSVKDSLSNKFRMKDLG 196          
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A7D9M8W6_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M8W6_PARCT)

HSP 1 Score: 92.8 bits (229), Expect = 3.650e-19
Identity = 52/142 (36.62%), Postives = 83/142 (58.45%), Query Frame = 0
Query:    1 MSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPF-VRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRRE-NVDEFKHNISQRCRMRDFG 140
            ++++R +  LA + D E+  M+V  AYLNAPV+ EL+I+ P  F   S      V +L KSLY L Q+ R+WN+ L  FL   G  +  +D C+YI + +G  T LL+  + DD+ IA     ++ + K ++S + +M+D G
Sbjct:  136 ITSIRMLMQLALDLDMEVHQMDVKTAYLNAPVDCELYIEQPEGFVKHSESGEMLVCKLNKSLYGLKQSGRNWNHMLHTFLTSKGFTQLVSDPCVYIKKQNGKTTILLI--WVDDIIIASNSTPSLKQVKDDLSCKFKMKDLG 275          
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A6S7GJK5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GJK5_PARCT)

HSP 1 Score: 92.8 bits (229), Expect = 4.140e-19
Identity = 52/142 (36.62%), Postives = 83/142 (58.45%), Query Frame = 0
Query:    1 MSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPF-VRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRRE-NVDEFKHNISQRCRMRDFG 140
            ++++R +  LA + D E+  M+V  AYLNAPV+ EL+I+ P  F   S      V +L KSLY L Q+ R+WN+ L  FL   G  +  +D C+YI + +G  T LL+  + DD+ IA     ++ + K ++S + +M+D G
Sbjct:  890 ITSIRMLMQLALDLDMEVHQMDVKTAYLNAPVDCELYIEQPEGFVKHSESGEMLVCKLNKSLYGLKQSGRNWNHMLHTFLTSKGFTQLVSDPCVYIKKQNGKTTILLI--WVDDIIIASNSTPSLKQVKDDLSCKFKMKDLG 1029          
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A2Z6NYP5_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NYP5_TRISU)

HSP 1 Score: 92.8 bits (229), Expect = 4.180e-19
Identity = 52/142 (36.62%), Postives = 82/142 (57.75%), Query Frame = 0
Query:    1 MSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLV-AVYADDLAIAGRREN-VDEFKHNISQRCRMRDFG 140
            M T+R V ++A  ND+ +  M+V +A+LN P+E+E+F+  PP +   S++   V RL+K+LY L Q  R+W   +  FL  IG  +  T+   Y+ + D  E  L+V  +Y DDL I G  +N + EFK ++ +   M D G
Sbjct:  763 METIRLVTAIANMNDWPMYQMDVKSAFLNGPIEEEVFVTQPPGYVVKSQENK-VYRLKKALYGLKQAPRAWKRRIDKFLTEIGFVKCVTEHGAYVKKHD--EKGLIVMCLYVDDLLITGSNDNYISEFKSDLKKEFEMTDLG 901          
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A0G4GHW4_VITBC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GHW4_VITBC)

HSP 1 Score: 91.3 bits (225), Expect = 6.260e-19
Identity = 47/137 (34.31%), Postives = 80/137 (58.39%), Query Frame = 0
Query:    4 LRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRRENVDEFKHNISQRCRMRDFG 140
            +R + ++A + D E+  M+V+ A+LNAP++K +F++ PP +        +V RLRK+LY L +  R+WN TL + L+ +G  R   + C+Y+  + G    +++ V+ DD+ IA R E V  FK  +S     +D G
Sbjct:   97 VRAILAIANQLDLEIHQMDVNTAFLNAPLDKPVFMECPPGYERPG----YVVRLRKALYGLKEAPRAWNITLHNRLLHLGFRRHPKEPCVYLHDNKG----VMLCVFVDDILIASREEGVTWFKSQLSSVFATKDLG 225          
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A0C3DBP3_9AGAM (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Scleroderma citrinum Foug A TaxID=1036808 RepID=A0A0C3DBP3_9AGAM)

HSP 1 Score: 92.0 bits (227), Expect = 7.690e-19
Identity = 49/140 (35.00%), Postives = 81/140 (57.86%), Query Frame = 0
Query:    2 STLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRR-ENVDEFKHNISQRCRMRDFG 140
            +TL T+ S+ A  D+EL  ++V  AYL   +++E+++++P       ++  +  +L K+LY L Q  R W   L + +  + LE+   D CLYI  +DG   +LLV  Y DD+A+AG+   +V EFK NI++   + D G
Sbjct:  639 TTLHTLLSIVAHEDWELHQVDVVGAYLQGDLDEEIYMEVPEGVKEKGKE-GWYWKLTKALYGLKQAGRQWKKKLDEIMGKLSLEKSQADDCLYIHHEDG-IVALLVLAYVDDMAVAGKNLAHVREFKKNIARHVEITDLG 776          
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A0G4GML6_VITBC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GML6_VITBC)

HSP 1 Score: 90.5 bits (223), Expect = 9.620e-19
Identity = 47/136 (34.56%), Postives = 80/136 (58.82%), Query Frame = 0
Query:    4 LRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRRENVDEFKHNISQRCRMRDF 139
            +R V ++A + D E+  M+V+ A+LNAP++K +FI+ PP +        ++ RLRK+LY L +  R+WN TL + L+ +G  R   + C+Y+  + G    ++++V+ DD+ IA R E V  FK  +S     +D 
Sbjct:   97 MRAVLAIANQLDVEIHQMDVNTAFLNAPLDKPVFIECPPGYGRPG----YIVRLRKALYGLKEAPRAWNITLHNQLLHLGFRRHPKEPCVYLHDNKG----IMLSVFVDDILIASREEGVTWFKSQLSTVFATKDL 224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9L0S1_PARCT2.090e-2034.48Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2K3MSU0_TRIPR4.830e-2034.04Copia-type polyprotein n=1 Tax=Trifolium pratense ... [more]
A0A6S7IT23_PARCT1.150e-1936.62Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9JQ57_PARCT2.020e-1934.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9M8W6_PARCT3.650e-1936.62Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7GJK5_PARCT4.140e-1936.62Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2Z6NYP5_TRISU4.180e-1936.62Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A0G4GHW4_VITBC6.260e-1934.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0C3DBP3_9AGAM7.690e-1935.00Integrase catalytic domain-containing protein (Fra... [more]
A0A0G4GML6_VITBC9.620e-1934.56Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..142
e-value: 7.8E-25
score: 87.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23833contigH-paniculata_contig23833:2782..3222 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23833.6442.1mRNA_H-paniculata_contig23833.6442.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig23833 2635..3890 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig23833.6442.1 ID=prot_H-paniculata_contig23833.6442.1|Name=mRNA_H-paniculata_contig23833.6442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRD
IPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDG
GETSLLVAVYADDLAIAGRRENVDEFKHNISQRCRMRDFGSCACWE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2