mRNA_H-paniculata_contig2372.6413.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2372.6413.1
Unique NamemRNA_H-paniculata_contig2372.6413.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2372.6413.1 vs. uniprot
Match: A0A6H5L2V5_9PHAE (Beta_elim_lyase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2V5_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.750e-27
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   13 LLTSGTMGNLIAVGAHCRRGDEIIVGTNSHMICYEAAGASAFMGVSYSALDNQTDGGMAVKDIEGAIREDDPHYPRS 243
            L+ SGTMGNLIAVGAHCRRGDE+I+G  SH+  YE AGASA MGVSY  + N  DGG+ V DIE A+R DDPHYPRS
Sbjct:  207 LVPSGTMGNLIAVGAHCRRGDELILGDKSHIFQYEGAGASALMGVSYHTVRNAEDGGLEVADIETAVRGDDPHYPRS 283          
BLAST of mRNA_H-paniculata_contig2372.6413.1 vs. uniprot
Match: A0A2D4C5R1_PYTIN (L-allo-threonine aldolase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5R1_PYTIN)

HSP 1 Score: 109 bits (273), Expect = 4.420e-27
Identity = 49/81 (60.49%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    1 PRSPLLTSGTMGNLIAVGAHCRRGDEIIVGTNSHMICYEAAGASAFMGVSYSALDNQTDGGMAVKDIEGAIREDDPHYPRS 243
            P +  + SGTMGNLIAVG HCRRGDEII+G  SH+  YE AGASA+MGV + ++ NQ+DG +A++D+  A+R DDPHYPR+
Sbjct:   47 PAALFVPSGTMGNLIAVGVHCRRGDEIILGDKSHIFMYEGAGASAYMGVGFHSVRNQSDGTLALEDLANAVRADDPHYPRT 127          
BLAST of mRNA_H-paniculata_contig2372.6413.1 vs. uniprot
Match: A0A8K1FBA4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBA4_PYTOL)

HSP 1 Score: 108 bits (270), Expect = 1.390e-26
Identity = 49/76 (64.47%), Postives = 62/76 (81.58%), Query Frame = 1
Query:   16 LTSGTMGNLIAVGAHCRRGDEIIVGTNSHMICYEAAGASAFMGVSYSALDNQTDGGMAVKDIEGAIREDDPHYPRS 243
            + SGTM NLIAVGAHCRRGDEII+G  +H++ YE  GASA+MGVS+  + NQTDG + ++D++ AIR DDPHYPRS
Sbjct:   61 VPSGTMANLIAVGAHCRRGDEIILGDKAHIVTYEGGGASAYMGVSFRTVPNQTDGTLRLEDLKDAIRGDDPHYPRS 136          
BLAST of mRNA_H-paniculata_contig2372.6413.1 vs. uniprot
Match: A0A6G0XNI5_9STRA (Beta_elim_lyase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XNI5_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.940e-26
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    1 PRSPLLTSGTMGNLIAVGAHCRRGDEIIVGTNSHMICYEAAGASAFMGVSYSALDNQTDGGMAVKDIEGAIREDDPHYPRS 243
            P +  + SGTMGNLI+VG HC RGDE+I+G  SH+  YE  GASAF+GVS   + NQ DG + ++DIE AIREDDPH+PRS
Sbjct:   55 PAALFVPSGTMGNLISVGVHCNRGDEVILGNKSHVFKYEGGGASAFLGVSMHTVPNQADGSLLLEDIEAAIREDDPHFPRS 135          
BLAST of mRNA_H-paniculata_contig2372.6413.1 vs. uniprot
Match: A0A0P1AV90_PLAHL (L-allo-threonine aldolase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AV90_PLAHL)

HSP 1 Score: 104 bits (259), Expect = 2.600e-26
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 1
Query:   16 LTSGTMGNLIAVGAHCRRGDEIIVGTNSHMICYEAAGASAFMGVSYSALDNQTDGGMAVKDIEGAIREDDPHYPRS 243
            + SGTM NLIA+G HCRRG+EII G  +H+  YE AGASA+MGVS   ++NQ DG + +KD++ AIR DDPHYPR+
Sbjct:   62 VPSGTMSNLIAIGTHCRRGEEIICGDKAHIFLYEGAGASAYMGVSLHTVENQRDGTLDIKDVQNAIRADDPHYPRT 137          
BLAST of mRNA_H-paniculata_contig2372.6413.1 vs. uniprot
Match: A0A8K1FA57_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FA57_PYTOL)

HSP 1 Score: 105 bits (263), Expect = 1.060e-25
Identity = 47/81 (58.02%), Postives = 62/81 (76.54%), Query Frame = 1
Query:    1 PRSPLLTSGTMGNLIAVGAHCRRGDEIIVGTNSHMICYEAAGASAFMGVSYSALDNQTDGGMAVKDIEGAIREDDPHYPRS 243
            P +  + SGTMGNLIA+GAHCRRGDEII+G  SH+  YE  GASA+MGVS+  L NQ +G + + D++ A+R+DD HYPR+
Sbjct:   35 PAALYVPSGTMGNLIAIGAHCRRGDEIILGNKSHIFMYEGGGASAYMGVSFHTLPNQANGTLRLDDLKNAVRDDDQHYPRT 115          
BLAST of mRNA_H-paniculata_contig2372.6413.1 vs. uniprot
Match: A0A3R7GQH5_9STRA (Beta_elim_lyase domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GQH5_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.000e-25
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 1
Query:   16 LTSGTMGNLIAVGAHCRRGDEIIVGTNSHMICYEAAGASAFMGVSYSALDNQTDGGMAVKDIEGAIREDDPHYPRS 243
            + SGTM NLIA+G HCRRGDE+I G  +H+  YE  GASA MGVS   + NQTDG ++++DI GAIR+DDPHYPR+
Sbjct:   61 VPSGTMANLIAIGTHCRRGDEVICGDKAHIFMYEGGGASAHMGVSLHTIPNQTDGTLSLEDIAGAIRDDDPHYPRT 136          
BLAST of mRNA_H-paniculata_contig2372.6413.1 vs. uniprot
Match: A0A485LPZ3_9STRA (Aste57867_24183 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPZ3_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.400e-25
Identity = 49/76 (64.47%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   16 LTSGTMGNLIAVGAHCRRGDEIIVGTNSHMICYEAAGASAFMGVSYSALDNQTDGGMAVKDIEGAIREDDPHYPRS 243
            + SGTMGNLIAVG HC RGDE+I+G  SH+  YE AG SA+MGV    + NQT+G M V DI+ AIR DDPHYPRS
Sbjct:   60 VPSGTMGNLIAVGVHCNRGDEVILGNKSHVFKYEGAGVSAYMGVGMHTVPNQTNGTMFVPDIQSAIRGDDPHYPRS 135          
BLAST of mRNA_H-paniculata_contig2372.6413.1 vs. uniprot
Match: W2QYD2_PHYPN (Beta_elim_lyase domain-containing protein n=21 Tax=Phytophthora TaxID=4783 RepID=W2QYD2_PHYPN)

HSP 1 Score: 104 bits (259), Expect = 5.550e-25
Identity = 46/81 (56.79%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    1 PRSPLLTSGTMGNLIAVGAHCRRGDEIIVGTNSHMICYEAAGASAFMGVSYSALDNQTDGGMAVKDIEGAIREDDPHYPRS 243
            P +  + SGTM NLIA+G HCRRGDE+I G  +H+  YE  GASA+MGVS   + NQ DG + +KDI  A+R+DDPHYPR+
Sbjct:   57 PAALYVPSGTMSNLIAIGTHCRRGDEVICGDKAHIFLYEGGGASAYMGVSLHTVPNQPDGTLDIKDIHNAVRDDDPHYPRT 137          
BLAST of mRNA_H-paniculata_contig2372.6413.1 vs. uniprot
Match: K3WHL8_GLOUD (Beta_elim_lyase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHL8_GLOUD)

HSP 1 Score: 103 bits (258), Expect = 8.730e-25
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1
Query:   16 LTSGTMGNLIAVGAHCRRGDEIIVGTNSHMICYEAAGASAFMGVSYSALDNQTDGGMAVKDIEGAIREDDPHYPRS 243
            + SGTM NLIA+GAHCRRGDEIIVG  +H+  YE AGASA+MGV    + NQ DG M + DI+ A+R DDPHYPR+
Sbjct:   70 VPSGTMSNLIALGAHCRRGDEIIVGDKAHIFMYEGAGASAYMGVGLHTVKNQPDGTMKLADIQDAVRADDPHYPRT 145          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2372.6413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2V5_9PHAE1.750e-2770.13Beta_elim_lyase domain-containing protein n=2 Tax=... [more]
A0A2D4C5R1_PYTIN4.420e-2760.49L-allo-threonine aldolase n=1 Tax=Pythium insidios... [more]
A0A8K1FBA4_PYTOL1.390e-2664.47Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XNI5_9STRA1.940e-2660.49Beta_elim_lyase domain-containing protein n=1 Tax=... [more]
A0A0P1AV90_PLAHL2.600e-2660.53L-allo-threonine aldolase n=1 Tax=Plasmopara halst... [more]
A0A8K1FA57_PYTOL1.060e-2558.02Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7GQH5_9STRA2.000e-2561.84Beta_elim_lyase domain-containing protein n=2 Tax=... [more]
A0A485LPZ3_9STRA5.400e-2564.47Aste57867_24183 protein n=1 Tax=Aphanomyces stella... [more]
W2QYD2_PHYPN5.550e-2556.79Beta_elim_lyase domain-containing protein n=21 Tax... [more]
K3WHL8_GLOUD8.730e-2563.16Beta_elim_lyase domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2372contigH-paniculata_contig2372:21090..21332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2.3e-20
Seed eggNOG ortholog2880.D7FWM2
KEGG rclassRC00312,RC00372
KEGG koko:K01620
KEGG ReactionR00751,R06171
KEGG Pathwayko00260,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map01100,map01110,map01120,map01130,map01230
Hectar predicted targeting categoryother localisation
EggNOG free text desc.L-allo-threonine aldolase activity
EggNOG OGsCOG2008@1,KOG1368@2759
Ec32 ortholog descriptionThreonine aldolase
Ec32 orthologEc-11_002460.1
EC4.1.2.48
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size243
Cds size213
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929675.811532-UTR-H-paniculata_contig2372:21089..211191622929675.811532-UTR-H-paniculata_contig2372:21089..21119Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2372 21090..21119 +
1691480962.3618166-UTR-H-paniculata_contig2372:21089..211191691480962.3618166-UTR-H-paniculata_contig2372:21089..21119Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2372 21090..21119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929675.8423624-CDS-H-paniculata_contig2372:21119..213321622929675.8423624-CDS-H-paniculata_contig2372:21119..21332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2372 21120..21332 +
1691480962.3768532-CDS-H-paniculata_contig2372:21119..213321691480962.3768532-CDS-H-paniculata_contig2372:21119..21332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2372 21120..21332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2372.6413.1prot_H-paniculata_contig2372.6413.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2372 21120..21332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2372.6413.1

>prot_H-paniculata_contig2372.6413.1 ID=prot_H-paniculata_contig2372.6413.1|Name=mRNA_H-paniculata_contig2372.6413.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MGNLIAVGAHCRRGDEIIVGTNSHMICYEAAGASAFMGVSYSALDNQTDG
GMAVKDIEGAIREDDPHYPRS
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mRNA from alignment at H-paniculata_contig2372:21090..21332+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2372.6413.1 ID=mRNA_H-paniculata_contig2372.6413.1|Name=mRNA_H-paniculata_contig2372.6413.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=243bp|location=Sequence derived from alignment at H-paniculata_contig2372:21090..21332+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCGTTCCCCCCTGCTCACCAGTGGTACCATGGGAAACCTCATCGCCGT GGGAGCGCACTGCCGGCGGGGAGATGAGATCATCGTTGGTACCAACTCGC ACATGATTTGCTACGAAGCCGCCGGCGCCAGCGCATTCATGGGAGTGTCC TACAGCGCCCTAGACAACCAGACCGACGGGGGGATGGCCGTCAAGGACAT CGAGGGGGCGATTCGGGAAGATGACCCGCACTATCCTAGGTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig2372:21090..21332+

>mRNA_H-paniculata_contig2372.6413.1 ID=mRNA_H-paniculata_contig2372.6413.1|Name=mRNA_H-paniculata_contig2372.6413.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig2372:21090..21332+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAAACCTCATCGCCGTGGGAGCGCACTGCCGGCGGGGAGATGAGAT
CATCGTTGGTACCAACTCGCACATGATTTGCTACGAAGCCGCCGGCGCCA
GCGCATTCATGGGAGTGTCCTACAGCGCCCTAGACAACCAGACCGACGGG
GGGATGGCCGTCAAGGACATCGAGGGGGCGATTCGGGAAGATGACCCGCA
CTATCCTAGGTCAATGGGAAACCTCATCGCCGTGGGAGCGCACTGCCGGC
GGGGAGATGAGATCATCGTTGGTACCAACTCGCACATGATTTGCTACGAA
GCCGCCGGCGCCAGCGCATTCATGGGAGTGTCCTACAGCGCCCTAGACAA
CCAGACCGACGGGGGGATGGCCGTCAAGGACATCGAGGGGGCGATTCGGG
AAGATGACCCGCACTATCCTAGGTCA
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