mRNA_H-paniculata_contig23694.6399.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23694.6399.1
Unique NamemRNA_H-paniculata_contig23694.6399.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23694.6399.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.480e-36
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 1
Query:    1 HTAAVYVAKFAPRDSLVASAGFDRTLRLWEGSYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQ 201
            HTAAVYVAKF+PRDSLVASAGFDRTLRLWEG+YPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQ
Sbjct:  138 HTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQ 204          
BLAST of mRNA_H-paniculata_contig23694.6399.1 vs. uniprot
Match: A0A835YSR1_9STRA (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR1_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.180e-16
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:    1 HTAAVYVAKFAPRDSLVASAGFDRTLRLWEGSYPYSQVACLEGHRQLISD 150
            HTAAVY   F+P  +LVAS GFDRT+RLWEG YP+SQVACL  HRQL+SD
Sbjct:   80 HTAAVYAVAFSPCGNLVASGGFDRTVRLWEGGYPHSQVACLAEHRQLVSD 129          
BLAST of mRNA_H-paniculata_contig23694.6399.1 vs. uniprot
Match: A0A1V9Z1V2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1V2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.230e-8
Identity = 30/72 (41.67%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    1 HTAAVYVAKFAPRDSLVASAGFDRTLRLWEGSYPYSQ--VACLEGHRQLISDLCWAPDGRSLLSASFDQVFH 210
            H  AVY  KF+P   L+AS   D  + LW+ +  ++Q  +A L  H QL+ D+ W+ D RSLLSAS+D   +
Sbjct:  118 HGGAVYTTKFSPCGRLLASGSLDCRVLLWDITTKFNQQQLASLASHNQLVIDMSWSNDSRSLLSASYDHTVN 189          
BLAST of mRNA_H-paniculata_contig23694.6399.1 vs. uniprot
Match: T0QW05_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QW05_SAPDV)

HSP 1 Score: 56.6 bits (135), Expect = 1.460e-7
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 1
Query:   10 AVYVAKFAPRDSLVASAGFDRTLRLWEGSYPYSQ--VACLEGHRQLISDLCWAPDGRSLLSASFDQVFH 210
            AVY  KF+P   L+AS   D  + LW+ +  ++Q  +A L  H QLI D+ W+ D RSLLSAS+D   +
Sbjct:  134 AVYTTKFSPCGRLLASGSLDCRVLLWDITTKFNQQQLASLTQHNQLIIDISWSNDSRSLLSASYDHTVN 202          
BLAST of mRNA_H-paniculata_contig23694.6399.1 vs. uniprot
Match: A0A1V2LDD2_CYBFA (Protein HIR n=2 Tax=Cyberlindnera fabianii TaxID=36022 RepID=A0A1V2LDD2_CYBFA)

HSP 1 Score: 53.1 bits (126), Expect = 2.490e-6
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 1
Query:   43 SLVASAGFDRTLRLWEGSYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFD 198
            S+VA+AG D++L +W   YP   V   E   + I+DLCW PDG SL  +S D
Sbjct:  267 SVVATAGHDKSLAIWNNMYPRPVVVFEEFSMKTITDLCWTPDGSSLFVSSLD 318          
BLAST of mRNA_H-paniculata_contig23694.6399.1 vs. uniprot
Match: A0A7S1NRB8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NRB8_9EUGL)

HSP 1 Score: 50.1 bits (118), Expect = 8.840e-6
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = 1
Query:   13 VYVAKFAPRDSLVASAGFDRTLRLWEGSY-PYSQVACLEGHRQLISDLCWAPDGRSLLSASFD 198
            +Y A F+P  SL+A  G+D  + LW G+      +  L GH   +S L +APDGR+LLSAS D
Sbjct:    2 IYGADFSPDGSLLALGGWDGRVSLWGGANGALCLLRTLTGHTGFVSALAFAPDGRTLLSASGD 64          
BLAST of mRNA_H-paniculata_contig23694.6399.1 vs. uniprot
Match: A0A7S3R2P6_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R2P6_DUNTE)

HSP 1 Score: 51.2 bits (121), Expect = 1.160e-5
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 1
Query:   49 VASAGFDRTLRLWEGSYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQ 201
            +AS   D T+ LW  S     VA + GH Q ++ +C++PDGR LLSASFD+
Sbjct:  343 MASGSDDYTMFLWSPSTSKQHVARMTGHMQTVNQVCFSPDGRLLLSASFDK 393          
BLAST of mRNA_H-paniculata_contig23694.6399.1 vs. uniprot
Match: A0A2V0NRX9_9CHLO (NLE domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NRX9_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 2.230e-5
Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   37 RDSLVASAGFDRTLRLWEGSYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQ 201
            R   + S   D T+ LW+ S   + +A L GH QLI+ +C++PDGR +LSASFD+
Sbjct:  346 RPERLVSGSDDFTMFLWQPSTGKAHLARLTGHVQLINQVCFSPDGRWVLSASFDK 400          
BLAST of mRNA_H-paniculata_contig23694.6399.1 vs. uniprot
Match: A0A0P4WHU8_SCYOL (NLE domain-containing protein n=3 Tax=Portunidae TaxID=6757 RepID=A0A0P4WHU8_SCYOL)

HSP 1 Score: 49.7 bits (117), Expect = 4.100e-5
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1
Query:   49 VASAGFDRTLRLWEGSYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQ 201
            +AS   D TL LWE S     VA L GH+QL++D+ ++PD R++ SASFD+
Sbjct:  420 LASGSDDFTLFLWEPSRDKKPVARLTGHQQLVNDVKFSPDTRTIASASFDK 470          
BLAST of mRNA_H-paniculata_contig23694.6399.1 vs. uniprot
Match: A0A0B2WLG3_METAS (WD40 repeat-like-containing domain protein n=1 Tax=Metarhizium album (strain ARSEF 1941) TaxID=1081103 RepID=A0A0B2WLG3_METAS)

HSP 1 Score: 49.7 bits (117), Expect = 4.190e-5
Identity = 26/74 (35.14%), Postives = 42/74 (56.76%), Query Frame = 1
Query:    1 HTAAVYVAKFAPRDSLVASAGFDRTLRLWE-----GSYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQVF 207
            H  AV+   F+P  S +A+A  D+T+ +W+     GS P   +  +EGH+  +  +CWA +GR ++S S D  F
Sbjct:  220 HDNAVHSVAFSPHGSRLATASLDKTVGVWDMPSTGGSKP-GFLRAMEGHKDTVLSVCWAENGRWVISGSKDGSF 292          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23694.6399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KNQ7_9PHAE1.480e-3697.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSR1_9STRA1.180e-1672.00WD40-repeat-containing domain protein (Fragment) n... [more]
A0A1V9Z1V2_9STRA2.230e-841.67Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
T0QW05_SAPDV1.460e-743.48Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V2LDD2_CYBFA2.490e-646.15Protein HIR n=2 Tax=Cyberlindnera fabianii TaxID=3... [more]
A0A7S1NRB8_9EUGL8.840e-644.44Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S3R2P6_DUNTE1.160e-547.06Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A2V0NRX9_9CHLO2.230e-545.45NLE domain-containing protein n=1 Tax=Raphidocelis... [more]
A0A0P4WHU8_SCYOL4.100e-549.02NLE domain-containing protein n=3 Tax=Portunidae T... [more]
A0A0B2WLG3_METAS4.190e-535.14WD40 repeat-like-containing domain protein n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23694contigH-paniculata_contig23694:3221..3448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue5.6e-09
Seed eggNOG ortholog272952.HpaP812042
KEGG koko:K14963
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs3Q7SN@4776,KOG0266@1,KOG0266@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929674.1203356-CDS-H-paniculata_contig23694:3220..34481622929674.1203356-CDS-H-paniculata_contig23694:3220..3448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23694 3221..3448 +
1691480961.638932-CDS-H-paniculata_contig23694:3220..34481691480961.638932-CDS-H-paniculata_contig23694:3220..3448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23694 3221..3448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23694.6399.1prot_H-paniculata_contig23694.6399.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23694 3221..3448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23694.6399.1

>prot_H-paniculata_contig23694.6399.1 ID=prot_H-paniculata_contig23694.6399.1|Name=mRNA_H-paniculata_contig23694.6399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
HTAAVYVAKFAPRDSLVASAGFDRTLRLWEGSYPYSQVACLEGHRQLISD
LCWAPDGRSLLSASFDQVFHCTVVQ*
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mRNA from alignment at H-paniculata_contig23694:3221..3448+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23694.6399.1 ID=mRNA_H-paniculata_contig23694.6399.1|Name=mRNA_H-paniculata_contig23694.6399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at H-paniculata_contig23694:3221..3448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACACGGCCGCGGTGTACGTGGCCAAATTTGCGCCGCGCGACAGCCTGGT GGCATCCGCTGGGTTCGACAGGACTTTGAGGCTGTGGGAGGGCTCGTATC CGTACAGCCAGGTGGCGTGTCTGGAGGGGCACCGACAGCTTATCAGCGAT TTGTGTTGGGCGCCCGACGGACGGTCTCTGCTAAGCGCTTCGTTTGATCA GGTATTTCATTGTACGGTAGTTCAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig23694:3221..3448+

>mRNA_H-paniculata_contig23694.6399.1 ID=mRNA_H-paniculata_contig23694.6399.1|Name=mRNA_H-paniculata_contig23694.6399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig23694:3221..3448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACACGGCCGCGGTGTACGTGGCCAAATTTGCGCCGCGCGACAGCCTGGT
GGCATCCGCTGGGTTCGACAGGACTTTGAGGCTGTGGGAGGGCTCGTATC
CGTACAGCCAGGTGGCGTGTCTGGAGGGGCACCGACAGCTTATCAGCGAT
TTGTGTTGGGCGCCCGACGGACGGTCTCTGCTAAGCGCTTCGTTTGATCA
GGTATTTCATTGTACGGTAGTTCAGTAGCACACGGCCGCGGTGTACGTGG
CCAAATTTGCGCCGCGCGACAGCCTGGTGGCATCCGCTGGGTTCGACAGG
ACTTTGAGGCTGTGGGAGGGCTCGTATCCGTACAGCCAGGTGGCGTGTCT
GGAGGGGCACCGACAGCTTATCAGCGATTTGTGTTGGGCGCCCGACGGAC
GGTCTCTGCTAAGCGCTTCGTTTGATCAGGTATTTCATTGTACGGTAGTT
CAGTAG
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