mRNA_H-paniculata_contig10988.639.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10988.639.1
Unique NamemRNA_H-paniculata_contig10988.639.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10988.639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10988contigH-paniculata_contig10988:1193..4967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1687
Cds size1494
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10988.639.1prot_H-paniculata_contig10988.639.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10988 1193..3555 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928805.136551-CDS-H-paniculata_contig10988:1192..22781622928805.136551-CDS-H-paniculata_contig10988:1192..2278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10988 1193..2278 -
1691480626.6741247-CDS-H-paniculata_contig10988:1192..22781691480626.6741247-CDS-H-paniculata_contig10988:1192..2278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10988 1193..2278 -
1622928805.1479135-CDS-H-paniculata_contig10988:3147..35551622928805.1479135-CDS-H-paniculata_contig10988:3147..3555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10988 3148..3555 -
1691480626.6814547-CDS-H-paniculata_contig10988:3147..35551691480626.6814547-CDS-H-paniculata_contig10988:3147..3555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10988 3148..3555 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928805.4066236-UTR-H-paniculata_contig10988:3555..35661622928805.4066236-UTR-H-paniculata_contig10988:3555..3566Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10988 3556..3566 -
1691480626.6886532-UTR-H-paniculata_contig10988:3555..35661691480626.6886532-UTR-H-paniculata_contig10988:3555..3566Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10988 3556..3566 -
1622928805.4215562-UTR-H-paniculata_contig10988:4787..49671622928805.4215562-UTR-H-paniculata_contig10988:4787..4967Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10988 4788..4967 -
1691480626.6993697-UTR-H-paniculata_contig10988:4787..49671691480626.6993697-UTR-H-paniculata_contig10988:4787..4967Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10988 4788..4967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10988.639.1

>prot_H-paniculata_contig10988.639.1 ID=prot_H-paniculata_contig10988.639.1|Name=mRNA_H-paniculata_contig10988.639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=498bp
MLNVGDSAQQRLDAMPPSAPRPPPSPPIPNHHGDHGPASTTPRLRTGRRK
RSMKGMVGGAARCSSAATVAVVATVVSATSLCRHAAGAAATMTPSGEVAA
APALVVMTESVTNCRCAAVGARGRNNAAVLRPATGLVLPTERRQRDRLPR
GIDRAQRVSAFAAPVVFLGGPLSHSRRSVSPFPSSQPSSLLSYSTATFSS
LPGRRRRSWRRNRFSELYWEGPSSCSSCHGYSSLSPLSSCSQLEEPSSLL
PPGRRLFHCLPTAAVGSAGSVGRPARTATSHRITGHSPTRRYSSTIGDLD
TQSPGQFRRPRRHSPISSSTTSSSTSSFLSYPRYHTAGLHRLLRPSSYSI
AESLTDCSFSSSTVEGSDSAGLGTGASDEVVDSGDGGTAAGNRAGDTKGA
KRNVRHITKSSSSSSSSSSSSGSSRSRRGGDVGGGGWTAGRRRYGSVMLT
GGVRSGGTLVNMFRPLLDELDGARGSRQTGAAAMRVLRAGDEAGWEGV
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mRNA from alignment at H-paniculata_contig10988:1193..4967-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10988.639.1 ID=mRNA_H-paniculata_contig10988.639.1|Name=mRNA_H-paniculata_contig10988.639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3775bp|location=Sequence derived from alignment at H-paniculata_contig10988:1193..4967- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCAAAAGACCGGGTTGTGTCTGCTGTGCCAGACCTTCTGTGGGTCTAG
TGCTGTGCAACATCGCCCCCCCTCGACTGCGGCACCGCTGTCCTCGAGAA
CGTGGCACTGGACGTCTTAAATAGTGTTCTCTCCCCTGTTTGGTGCTGTA
GTCGGTGGGGAGTGGGCGACATCAACAAGGGTAGGTGTGCGGAACCACAG
AGTGCCAAGAGTACTCCAGGCTTACTGTCTCATGTTCAACCATGCGTTGT
GCTCGTTATAGCGGAAGAGTGTCTCCCGAATCCGCTGTAATTGTAGGGTG
TAGAGAGATGCCGTAATGGTGGTGCGAATTTATGATGCTGGACTGTCTTT
GGTTGGGCTAGGCTAGAGCAACATCTGCTGTTAACCATGGCCGTGCCGAT
AGCAGTCGCTAATCCAGTATTGATTGTAGTGTGGCCCACAGACACATGTT
TGCAGCGTTGTACAACACCCCGGTTTACACGTTGCTGACCACAGCCAAGT
GTGCGTGACTGCTGTAGTGTAGTAACTACTGTGTTCGTATTTGCCGCAAT
GTTCCACAGTGCACCGGCCGTGTTGTGTGGATTAGTTTGTGTGATGCAAA
TGTCTGTGTAGCATTGCAGTTCAAGTTGCACTCATCAACTGTACCAGACA
GTGGATAAACTACACGACCCAGTCGCTCGCTTTGTATCAAGTTTTGCAAG
GGAATTGGAACGAATGTAATCTTCAATGCCGTACATTACGCACCGACACT
GCTTTTGATTTGCTTGGCGCTAGACATGCATTCTCGAGTACCCTCCTTCA
GCTGTACCAGGTATCTGGTAGTGGCTGTTTATTGTTGATGTATGAATGAG
AAATGTAGGCACAGTTTGACAACTTACTATCTACATTCTCGTTGCTGCCA
ACCACGTATAAAATATCTCACTGTGCCACTTGAGTGGCACAGCCGCGGCT
ACGTCCGTGCAGTCGGTAATCTTTGGTCGTGACCCGTTTAGTCACTATCC
TAAATCCATGATCTTTGCATATCAGCTTGCTGCGCTTGAAGATTCGTTGT
TTAAGAAGTCACTTGCGATTAGACTAGAAAAGATGTTCCGAAACGACGTC
CTTACCGTGTCAAACAAAAGGAATTGGGACAGTCATGGCGGAGCAGAGAA
TCGAGCGCAATTCAACCATCCAAAGGTCATCACAGCACAGTAAATATCCA
GTAAATACCCAGTGTAGGGGACTTGATCCTGTATGTGGGACGGGGTCAAC
GATGGCAAGGAGGGAAGGAGAAGGATAACACAAAAACAGGCGAGTATGGA
GTATTTTCTCGCCCAATTTTTTTAAGTTCAAAGCGCTGAACCGAGTTTAC
TAAACGGGCGGGATACTGCTACTGTATTCTACTGTGCTGTAACGACAACA
GGACGCCTCCTTATGCTCAACGTCGGAGACAGCGCCCAGCAGCGGCTAGA
CGCTATGCCCCCCTCTGCGCCGCGGCCGCCGCCGTCGCCGCCAATTCCCA
ATCACCATGGGGATCATGGTCCAGCGTCAACAACCCCGCGGCTGCGTACC
GGCCGACGAAAGCGATCCATGAAGGGCATGGTGGGTGGGGCGGCGCGTTG
TAGTTCCGCCGCTACCGTCGCAGTCGTTGCGACGGTAGTCTCGGCTACGT
CGCTGTGTCGGCATGCGGCTGGGGCAGCGGCGACGATGACGCCCTCAGGA
GAGGTAGCGGCGGCACCAGCATTGGTGGTGATGACGGAATCGGTGACCAA
TTGTCGGTGCGCCGCGGTGGGGGCCAGAGGGCGTAACAATGCGGCGGTCT
TAAGGCCTGCCACTGGGCTGGTGAGTTTGTGCTCAGAGATGAACGCGAGG
TCGCAGGAACTATGATTCAAACATCAATAGTTGTTTTTTTGTTGGTTGGG
GGCTGGTTACAGTCTCGCAACTGGTTCCGCTGGTGGTACCGTGAAATTCA
ACAGGTGTTTATGGCGATGGTGATGTCATCGATGTTGTTACCTCTATATA
CAGTTCATGTGTGATGGCAACGTAGGCAGTAATTCCTGAGGGGGAAAAGG
CAAAAAATAATTTGGTTTGATAAGGAAACGGTTTCACTACACATTACCGT
ATACCAAGTGAGTGGTTGTACACTTCGCTATTCCTGGCTTCATTGAAAAC
CGAAAAAAAAAAAAAAAAAATGGGGTATGAAAATGAAACGGTTTCGCTGC
ACATTGCCGTACACCAAGTGAGAAGTAGTAGACTTCGCTCCTCCTGACTT
CATTTAAACCGACTTTTTTCGGGACAATCCATCGAACAAGCAACCCCACA
TTACATGCACACGTTGCCTGGAATTGAGGTTGTACTGGGTACAAACATAC
GTGAAAGCAAGTAACTCCTCGTATTCACCGATTTCTGACCGATTTTGGGG
CAAAAATAATTACTCACTTATTCTGCAGCATCATTCTGCAATTCTGTCAT
ACCCCCCTTTAGGTCATACTCCTACTGCGATTTCTCAAGCATCAATGTTT
TAGGCTACTAGCGTATTTGCATGCATTTGCATTATTAGTAGTAGACGGGC
CAAAGCTACACCTACAACACGCCAGTGGAGCATGACACGTTGAGAATACT
AAGTGGGCAGGAGAGAATGGAGAAATAAACCGTCACCGTCATCATTATCA
TGGCCTTATTAACCTAATAATGATTTTCTTTGTCCCCAGGTACTTCCCAC
GGAAAGGCGACAGCGAGACCGCCTGCCCCGAGGCATCGACCGAGCTCAAA
GGGTATCAGCATTTGCTGCCCCCGTAGTCTTCCTGGGAGGTCCACTGTCC
CACTCCCGCCGTTCCGTCTCCCCCTTTCCTTCTTCCCAACCCTCCTCTTT
ATTGTCATACTCCACCGCCACCTTTTCGTCGTTGCCGGGAAGGCGAAGGC
GGAGTTGGAGAAGGAACCGTTTTTCGGAACTATATTGGGAAGGTCCTTCT
TCGTGTTCTTCGTGTCACGGGTACTCATCGTTATCACCGTTGTCATCATG
TTCCCAACTGGAAGAACCTTCTTCGTTGTTGCCGCCGGGGAGAAGGTTAT
TCCATTGCTTGCCAACAGCAGCAGTAGGATCAGCAGGATCAGTAGGAAGA
CCAGCGCGCACAGCGACCTCCCACCGTATCACAGGCCACTCGCCAACCCG
CCGCTACAGCAGCACAATCGGCGACCTCGACACTCAATCACCGGGCCAGT
TCCGCCGCCCTCGCAGACATTCTCCAATCTCCTCTTCCACGACCTCCTCC
TCAACGTCCTCATTTTTATCTTACCCGCGGTATCATACCGCTGGATTACA
TCGCCTACTCCGGCCGTCGTCATACTCCATCGCTGAATCGCTAACGGATT
GCTCCTTTTCATCGTCCACTGTCGAAGGAAGCGATAGCGCCGGCCTCGGC
ACCGGCGCCAGCGATGAGGTGGTCGACAGCGGGGACGGCGGAACAGCGGC
TGGAAACCGTGCTGGTGACACCAAAGGAGCCAAAAGGAATGTACGACATA
TCACCAAGAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGT
AGCAGGAGCCGCAGGGGCGGTGATGTTGGTGGTGGTGGATGGACTGCGGG
TCGGAGAAGGTATGGTAGCGTGATGCTCACGGGAGGTGTTAGGAGCGGGG
GGACTCTGGTGAACATGTTTCGACCGTTGCTGGACGAGCTCGACGGGGCG
AGAGGCTCGAGGCAGACTGGGGCAGCGGCGATGCGGGTGTTGAGGGCTGG
GGATGAGGCTGGGTGGGAGGGCGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig10988:1193..4967-

>mRNA_H-paniculata_contig10988.639.1 ID=mRNA_H-paniculata_contig10988.639.1|Name=mRNA_H-paniculata_contig10988.639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2988bp|location=Sequence derived from alignment at H-paniculata_contig10988:1193..4967- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCAACGTCGGAGACAGCGCCCAGCAGCGGCTAGACGCTATGCCCCC
CTCTGCGCCGCGGCCGCCGCCGTCGCCGCCAATTCCCAATCACCATGGGG
ATCATGGTCCAGCGTCAACAACCCCGCGGCTGCGTACCGGCCGACGAAAG
CGATCCATGAAGGGCATGGTGGGTGGGGCGGCGCGTTGTAGTTCCGCCGC
TACCGTCGCAGTCGTTGCGACGGTAGTCTCGGCTACGTCGCTGTGTCGGC
ATGCGGCTGGGGCAGCGGCGACGATGACGCCCTCAGGAGAGGTAGCGGCG
GCACCAGCATTGGTGGTGATGACGGAATCGGTGACCAATTGTCGGTGCGC
CGCGGTGGGGGCCAGAGGGCGTAACAATGCGGCGGTCTTAAGGCCTGCCA
CTGGGCTGATGCTCAACGTCGGAGACAGCGCCCAGCAGCGGCTAGACGCT
ATGCCCCCCTCTGCGCCGCGGCCGCCGCCGTCGCCGCCAATTCCCAATCA
CCATGGGGATCATGGTCCAGCGTCAACAACCCCGCGGCTGCGTACCGGCC
GACGAAAGCGATCCATGAAGGGCATGGTGGGTGGGGCGGCGCGTTGTAGT
TCCGCCGCTACCGTCGCAGTCGTTGCGACGGTAGTCTCGGCTACGTCGCT
GTGTCGGCATGCGGCTGGGGCAGCGGCGACGATGACGCCCTCAGGAGAGG
TAGCGGCGGCACCAGCATTGGTGGTGATGACGGAATCGGTGACCAATTGT
CGGTGCGCCGCGGTGGGGGCCAGAGGGCGTAACAATGCGGCGGTCTTAAG
GCCTGCCACTGGGCTGGTACTTCCCACGGAAAGGCGACAGCGAGACCGCC
TGCCCCGAGGCATCGACCGAGCTCAAAGGGTATCAGCATTTGCTGCCCCC
GTAGTCTTCCTGGGAGGTCCACTGTCCCACTCCCGCCGTTCCGTCTCCCC
CTTTCCTTCTTCCCAACCCTCCTCTTTATTGTCATACTCCACCGCCACCT
TTTCGTCGTTGCCGGGAAGGCGAAGGCGGAGTTGGAGAAGGAACCGTTTT
TCGGAACTATATTGGGAAGGTCCTTCTTCGTGTTCTTCGTGTCACGGGTA
CTCATCGTTATCACCGTTGTCATCATGTTCCCAACTGGAAGAACCTTCTT
CGTTGTTGCCGCCGGGGAGAAGGTTATTCCATTGCTTGCCAACAGCAGCA
GTAGGATCAGCAGGATCAGTAGGAAGACCAGCGCGCACAGCGACCTCCCA
CCGTATCACAGGCCACTCGCCAACCCGCCGCTACAGCAGCACAATCGGCG
ACCTCGACACTCAATCACCGGGCCAGTTCCGCCGCCCTCGCAGACATTCT
CCAATCTCCTCTTCCACGACCTCCTCCTCAACGTCCTCATTTTTATCTTA
CCCGCGGTATCATACCGCTGGATTACATCGCCTACTCCGGCCGTCGTCAT
ACTCCATCGCTGAATCGCTAACGGATTGCTCCTTTTCATCGTCCACTGTC
GAAGGAAGCGATAGCGCCGGCCTCGGCACCGGCGCCAGCGATGAGGTGGT
CGACAGCGGGGACGGCGGAACAGCGGCTGGAAACCGTGCTGGTGACACCA
AAGGAGCCAAAAGGAATGTACGACATATCACCAAGAGTAGTAGTAGCAGC
AGCAGCAGCAGCAGCAGCAGCGGCAGTAGCAGGAGCCGCAGGGGCGGTGA
TGTTGGTGGTGGTGGATGGACTGCGGGTCGGAGAAGGTATGGTAGCGTGA
TGCTCACGGGAGGTGTTAGGAGCGGGGGGACTCTGGTGAACATGTTTCGA
CCGTTGCTGGACGAGCTCGACGGGGCGAGAGGCTCGAGGCAGACTGGGGC
AGCGGCGATGCGGGTGTTGAGGGCTGGGGATGAGGCTGGGTGGGAGGGCG
TGGTACTTCCCACGGAAAGGCGACAGCGAGACCGCCTGCCCCGAGGCATC
GACCGAGCTCAAAGGGTATCAGCATTTGCTGCCCCCGTAGTCTTCCTGGG
AGGTCCACTGTCCCACTCCCGCCGTTCCGTCTCCCCCTTTCCTTCTTCCC
AACCCTCCTCTTTATTGTCATACTCCACCGCCACCTTTTCGTCGTTGCCG
GGAAGGCGAAGGCGGAGTTGGAGAAGGAACCGTTTTTCGGAACTATATTG
GGAAGGTCCTTCTTCGTGTTCTTCGTGTCACGGGTACTCATCGTTATCAC
CGTTGTCATCATGTTCCCAACTGGAAGAACCTTCTTCGTTGTTGCCGCCG
GGGAGAAGGTTATTCCATTGCTTGCCAACAGCAGCAGTAGGATCAGCAGG
ATCAGTAGGAAGACCAGCGCGCACAGCGACCTCCCACCGTATCACAGGCC
ACTCGCCAACCCGCCGCTACAGCAGCACAATCGGCGACCTCGACACTCAA
TCACCGGGCCAGTTCCGCCGCCCTCGCAGACATTCTCCAATCTCCTCTTC
CACGACCTCCTCCTCAACGTCCTCATTTTTATCTTACCCGCGGTATCATA
CCGCTGGATTACATCGCCTACTCCGGCCGTCGTCATACTCCATCGCTGAA
TCGCTAACGGATTGCTCCTTTTCATCGTCCACTGTCGAAGGAAGCGATAG
CGCCGGCCTCGGCACCGGCGCCAGCGATGAGGTGGTCGACAGCGGGGACG
GCGGAACAGCGGCTGGAAACCGTGCTGGTGACACCAAAGGAGCCAAAAGG
AATGTACGACATATCACCAAGAGTAGTAGTAGCAGCAGCAGCAGCAGCAG
CAGCAGCGGCAGTAGCAGGAGCCGCAGGGGCGGTGATGTTGGTGGTGGTG
GATGGACTGCGGGTCGGAGAAGGTATGGTAGCGTGATGCTCACGGGAGGT
GTTAGGAGCGGGGGGACTCTGGTGAACATGTTTCGACCGTTGCTGGACGA
GCTCGACGGGGCGAGAGGCTCGAGGCAGACTGGGGCAGCGGCGATGCGGG
TGTTGAGGGCTGGGGATGAGGCTGGGTGGGAGGGCGTG
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