mRNA_H-paniculata_contig10988.639.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	1687
Cds size	1494
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig10988.639.1	prot_H-paniculata_contig10988.639.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig10988 1193..3555 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928805.136551-CDS-H-paniculata_contig10988:1192..2278	1622928805.136551-CDS-H-paniculata_contig10988:1192..2278	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig10988 1193..2278 -
1691480626.6741247-CDS-H-paniculata_contig10988:1192..2278	1691480626.6741247-CDS-H-paniculata_contig10988:1192..2278	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig10988 1193..2278 -
1622928805.1479135-CDS-H-paniculata_contig10988:3147..3555	1622928805.1479135-CDS-H-paniculata_contig10988:3147..3555	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig10988 3148..3555 -
1691480626.6814547-CDS-H-paniculata_contig10988:3147..3555	1691480626.6814547-CDS-H-paniculata_contig10988:3147..3555	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig10988 3148..3555 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928805.4066236-UTR-H-paniculata_contig10988:3555..3566	1622928805.4066236-UTR-H-paniculata_contig10988:3555..3566	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig10988 3556..3566 -
1691480626.6886532-UTR-H-paniculata_contig10988:3555..3566	1691480626.6886532-UTR-H-paniculata_contig10988:3555..3566	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig10988 3556..3566 -
1622928805.4215562-UTR-H-paniculata_contig10988:4787..4967	1622928805.4215562-UTR-H-paniculata_contig10988:4787..4967	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig10988 4788..4967 -
1691480626.6993697-UTR-H-paniculata_contig10988:4787..4967	1691480626.6993697-UTR-H-paniculata_contig10988:4787..4967	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig10988 4788..4967 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig10988:1193..4967-
coding sequence from alignment at H-paniculata_contig10988:1193..4967-

protein sequence of mRNA_H-paniculata_contig10988.639.1

>prot_H-paniculata_contig10988.639.1 ID=prot_H-paniculata_contig10988.639.1|Name=mRNA_H-paniculata_contig10988.639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=498bp
MLNVGDSAQQRLDAMPPSAPRPPPSPPIPNHHGDHGPASTTPRLRTGRRK
RSMKGMVGGAARCSSAATVAVVATVVSATSLCRHAAGAAATMTPSGEVAA
APALVVMTESVTNCRCAAVGARGRNNAAVLRPATGLVLPTERRQRDRLPR
GIDRAQRVSAFAAPVVFLGGPLSHSRRSVSPFPSSQPSSLLSYSTATFSS
LPGRRRRSWRRNRFSELYWEGPSSCSSCHGYSSLSPLSSCSQLEEPSSLL
PPGRRLFHCLPTAAVGSAGSVGRPARTATSHRITGHSPTRRYSSTIGDLD
TQSPGQFRRPRRHSPISSSTTSSSTSSFLSYPRYHTAGLHRLLRPSSYSI
AESLTDCSFSSSTVEGSDSAGLGTGASDEVVDSGDGGTAAGNRAGDTKGA
KRNVRHITKSSSSSSSSSSSSGSSRSRRGGDVGGGGWTAGRRRYGSVMLT
GGVRSGGTLVNMFRPLLDELDGARGSRQTGAAAMRVLRAGDEAGWEGV

mRNA from alignment at H-paniculata_contig10988:1193..4967-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig10988.639.1 ID=mRNA_H-paniculata_contig10988.639.1|Name=mRNA_H-paniculata_contig10988.639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3775bp|location=Sequence derived from alignment at H-paniculata_contig10988:1193..4967- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCAAAAGACCGGGTTGTGTCTGCTGTGCCAGACCTTCTGTGGGTCTAG
TGCTGTGCAACATCGCCCCCCCTCGACTGCGGCACCGCTGTCCTCGAGAA
CGTGGCACTGGACGTCTTAAATAGTGTTCTCTCCCCTGTTTGGTGCTGTA
GTCGGTGGGGAGTGGGCGACATCAACAAGGGTAGGTGTGCGGAACCACAG
AGTGCCAAGAGTACTCCAGGCTTACTGTCTCATGTTCAACCATGCGTTGT
GCTCGTTATAGCGGAAGAGTGTCTCCCGAATCCGCTGTAATTGTAGGGTG
TAGAGAGATGCCGTAATGGTGGTGCGAATTTATGATGCTGGACTGTCTTT
GGTTGGGCTAGGCTAGAGCAACATCTGCTGTTAACCATGGCCGTGCCGAT
AGCAGTCGCTAATCCAGTATTGATTGTAGTGTGGCCCACAGACACATGTT
TGCAGCGTTGTACAACACCCCGGTTTACACGTTGCTGACCACAGCCAAGT
GTGCGTGACTGCTGTAGTGTAGTAACTACTGTGTTCGTATTTGCCGCAAT
GTTCCACAGTGCACCGGCCGTGTTGTGTGGATTAGTTTGTGTGATGCAAA
TGTCTGTGTAGCATTGCAGTTCAAGTTGCACTCATCAACTGTACCAGACA
GTGGATAAACTACACGACCCAGTCGCTCGCTTTGTATCAAGTTTTGCAAG
GGAATTGGAACGAATGTAATCTTCAATGCCGTACATTACGCACCGACACT
GCTTTTGATTTGCTTGGCGCTAGACATGCATTCTCGAGTACCCTCCTTCA
GCTGTACCAGGTATCTGGTAGTGGCTGTTTATTGTTGATGTATGAATGAG
AAATGTAGGCACAGTTTGACAACTTACTATCTACATTCTCGTTGCTGCCA
ACCACGTATAAAATATCTCACTGTGCCACTTGAGTGGCACAGCCGCGGCT
ACGTCCGTGCAGTCGGTAATCTTTGGTCGTGACCCGTTTAGTCACTATCC
TAAATCCATGATCTTTGCATATCAGCTTGCTGCGCTTGAAGATTCGTTGT
TTAAGAAGTCACTTGCGATTAGACTAGAAAAGATGTTCCGAAACGACGTC
CTTACCGTGTCAAACAAAAGGAATTGGGACAGTCATGGCGGAGCAGAGAA
TCGAGCGCAATTCAACCATCCAAAGGTCATCACAGCACAGTAAATATCCA
GTAAATACCCAGTGTAGGGGACTTGATCCTGTATGTGGGACGGGGTCAAC
GATGGCAAGGAGGGAAGGAGAAGGATAACACAAAAACAGGCGAGTATGGA
GTATTTTCTCGCCCAATTTTTTTAAGTTCAAAGCGCTGAACCGAGTTTAC
TAAACGGGCGGGATACTGCTACTGTATTCTACTGTGCTGTAACGACAACA
GGACGCCTCCTTATGCTCAACGTCGGAGACAGCGCCCAGCAGCGGCTAGA
CGCTATGCCCCCCTCTGCGCCGCGGCCGCCGCCGTCGCCGCCAATTCCCA
ATCACCATGGGGATCATGGTCCAGCGTCAACAACCCCGCGGCTGCGTACC
GGCCGACGAAAGCGATCCATGAAGGGCATGGTGGGTGGGGCGGCGCGTTG
TAGTTCCGCCGCTACCGTCGCAGTCGTTGCGACGGTAGTCTCGGCTACGT
CGCTGTGTCGGCATGCGGCTGGGGCAGCGGCGACGATGACGCCCTCAGGA
GAGGTAGCGGCGGCACCAGCATTGGTGGTGATGACGGAATCGGTGACCAA
TTGTCGGTGCGCCGCGGTGGGGGCCAGAGGGCGTAACAATGCGGCGGTCT
TAAGGCCTGCCACTGGGCTGGTGAGTTTGTGCTCAGAGATGAACGCGAGG
TCGCAGGAACTATGATTCAAACATCAATAGTTGTTTTTTTGTTGGTTGGG
GGCTGGTTACAGTCTCGCAACTGGTTCCGCTGGTGGTACCGTGAAATTCA
ACAGGTGTTTATGGCGATGGTGATGTCATCGATGTTGTTACCTCTATATA
CAGTTCATGTGTGATGGCAACGTAGGCAGTAATTCCTGAGGGGGAAAAGG
CAAAAAATAATTTGGTTTGATAAGGAAACGGTTTCACTACACATTACCGT
ATACCAAGTGAGTGGTTGTACACTTCGCTATTCCTGGCTTCATTGAAAAC
CGAAAAAAAAAAAAAAAAAATGGGGTATGAAAATGAAACGGTTTCGCTGC
ACATTGCCGTACACCAAGTGAGAAGTAGTAGACTTCGCTCCTCCTGACTT
CATTTAAACCGACTTTTTTCGGGACAATCCATCGAACAAGCAACCCCACA
TTACATGCACACGTTGCCTGGAATTGAGGTTGTACTGGGTACAAACATAC
GTGAAAGCAAGTAACTCCTCGTATTCACCGATTTCTGACCGATTTTGGGG
CAAAAATAATTACTCACTTATTCTGCAGCATCATTCTGCAATTCTGTCAT
ACCCCCCTTTAGGTCATACTCCTACTGCGATTTCTCAAGCATCAATGTTT
TAGGCTACTAGCGTATTTGCATGCATTTGCATTATTAGTAGTAGACGGGC
CAAAGCTACACCTACAACACGCCAGTGGAGCATGACACGTTGAGAATACT
AAGTGGGCAGGAGAGAATGGAGAAATAAACCGTCACCGTCATCATTATCA
TGGCCTTATTAACCTAATAATGATTTTCTTTGTCCCCAGGTACTTCCCAC
GGAAAGGCGACAGCGAGACCGCCTGCCCCGAGGCATCGACCGAGCTCAAA
GGGTATCAGCATTTGCTGCCCCCGTAGTCTTCCTGGGAGGTCCACTGTCC
CACTCCCGCCGTTCCGTCTCCCCCTTTCCTTCTTCCCAACCCTCCTCTTT
ATTGTCATACTCCACCGCCACCTTTTCGTCGTTGCCGGGAAGGCGAAGGC
GGAGTTGGAGAAGGAACCGTTTTTCGGAACTATATTGGGAAGGTCCTTCT
TCGTGTTCTTCGTGTCACGGGTACTCATCGTTATCACCGTTGTCATCATG
TTCCCAACTGGAAGAACCTTCTTCGTTGTTGCCGCCGGGGAGAAGGTTAT
TCCATTGCTTGCCAACAGCAGCAGTAGGATCAGCAGGATCAGTAGGAAGA
CCAGCGCGCACAGCGACCTCCCACCGTATCACAGGCCACTCGCCAACCCG
CCGCTACAGCAGCACAATCGGCGACCTCGACACTCAATCACCGGGCCAGT
TCCGCCGCCCTCGCAGACATTCTCCAATCTCCTCTTCCACGACCTCCTCC
TCAACGTCCTCATTTTTATCTTACCCGCGGTATCATACCGCTGGATTACA
TCGCCTACTCCGGCCGTCGTCATACTCCATCGCTGAATCGCTAACGGATT
GCTCCTTTTCATCGTCCACTGTCGAAGGAAGCGATAGCGCCGGCCTCGGC
ACCGGCGCCAGCGATGAGGTGGTCGACAGCGGGGACGGCGGAACAGCGGC
TGGAAACCGTGCTGGTGACACCAAAGGAGCCAAAAGGAATGTACGACATA
TCACCAAGAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGT
AGCAGGAGCCGCAGGGGCGGTGATGTTGGTGGTGGTGGATGGACTGCGGG
TCGGAGAAGGTATGGTAGCGTGATGCTCACGGGAGGTGTTAGGAGCGGGG
GGACTCTGGTGAACATGTTTCGACCGTTGCTGGACGAGCTCGACGGGGCG
AGAGGCTCGAGGCAGACTGGGGCAGCGGCGATGCGGGTGTTGAGGGCTGG
GGATGAGGCTGGGTGGGAGGGCGTG

Coding sequence (CDS) from alignment at H-paniculata_contig10988:1193..4967-

>mRNA_H-paniculata_contig10988.639.1 ID=mRNA_H-paniculata_contig10988.639.1|Name=mRNA_H-paniculata_contig10988.639.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2988bp|location=Sequence derived from alignment at H-paniculata_contig10988:1193..4967- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCAACGTCGGAGACAGCGCCCAGCAGCGGCTAGACGCTATGCCCCC
CTCTGCGCCGCGGCCGCCGCCGTCGCCGCCAATTCCCAATCACCATGGGG
ATCATGGTCCAGCGTCAACAACCCCGCGGCTGCGTACCGGCCGACGAAAG
CGATCCATGAAGGGCATGGTGGGTGGGGCGGCGCGTTGTAGTTCCGCCGC
TACCGTCGCAGTCGTTGCGACGGTAGTCTCGGCTACGTCGCTGTGTCGGC
ATGCGGCTGGGGCAGCGGCGACGATGACGCCCTCAGGAGAGGTAGCGGCG
GCACCAGCATTGGTGGTGATGACGGAATCGGTGACCAATTGTCGGTGCGC
CGCGGTGGGGGCCAGAGGGCGTAACAATGCGGCGGTCTTAAGGCCTGCCA
CTGGGCTGATGCTCAACGTCGGAGACAGCGCCCAGCAGCGGCTAGACGCT
ATGCCCCCCTCTGCGCCGCGGCCGCCGCCGTCGCCGCCAATTCCCAATCA
CCATGGGGATCATGGTCCAGCGTCAACAACCCCGCGGCTGCGTACCGGCC
GACGAAAGCGATCCATGAAGGGCATGGTGGGTGGGGCGGCGCGTTGTAGT
TCCGCCGCTACCGTCGCAGTCGTTGCGACGGTAGTCTCGGCTACGTCGCT
GTGTCGGCATGCGGCTGGGGCAGCGGCGACGATGACGCCCTCAGGAGAGG
TAGCGGCGGCACCAGCATTGGTGGTGATGACGGAATCGGTGACCAATTGT
CGGTGCGCCGCGGTGGGGGCCAGAGGGCGTAACAATGCGGCGGTCTTAAG
GCCTGCCACTGGGCTGGTACTTCCCACGGAAAGGCGACAGCGAGACCGCC
TGCCCCGAGGCATCGACCGAGCTCAAAGGGTATCAGCATTTGCTGCCCCC
GTAGTCTTCCTGGGAGGTCCACTGTCCCACTCCCGCCGTTCCGTCTCCCC
CTTTCCTTCTTCCCAACCCTCCTCTTTATTGTCATACTCCACCGCCACCT
TTTCGTCGTTGCCGGGAAGGCGAAGGCGGAGTTGGAGAAGGAACCGTTTT
TCGGAACTATATTGGGAAGGTCCTTCTTCGTGTTCTTCGTGTCACGGGTA
CTCATCGTTATCACCGTTGTCATCATGTTCCCAACTGGAAGAACCTTCTT
CGTTGTTGCCGCCGGGGAGAAGGTTATTCCATTGCTTGCCAACAGCAGCA
GTAGGATCAGCAGGATCAGTAGGAAGACCAGCGCGCACAGCGACCTCCCA
CCGTATCACAGGCCACTCGCCAACCCGCCGCTACAGCAGCACAATCGGCG
ACCTCGACACTCAATCACCGGGCCAGTTCCGCCGCCCTCGCAGACATTCT
CCAATCTCCTCTTCCACGACCTCCTCCTCAACGTCCTCATTTTTATCTTA
CCCGCGGTATCATACCGCTGGATTACATCGCCTACTCCGGCCGTCGTCAT
ACTCCATCGCTGAATCGCTAACGGATTGCTCCTTTTCATCGTCCACTGTC
GAAGGAAGCGATAGCGCCGGCCTCGGCACCGGCGCCAGCGATGAGGTGGT
CGACAGCGGGGACGGCGGAACAGCGGCTGGAAACCGTGCTGGTGACACCA
AAGGAGCCAAAAGGAATGTACGACATATCACCAAGAGTAGTAGTAGCAGC
AGCAGCAGCAGCAGCAGCAGCGGCAGTAGCAGGAGCCGCAGGGGCGGTGA
TGTTGGTGGTGGTGGATGGACTGCGGGTCGGAGAAGGTATGGTAGCGTGA
TGCTCACGGGAGGTGTTAGGAGCGGGGGGACTCTGGTGAACATGTTTCGA
CCGTTGCTGGACGAGCTCGACGGGGCGAGAGGCTCGAGGCAGACTGGGGC
AGCGGCGATGCGGGTGTTGAGGGCTGGGGATGAGGCTGGGTGGGAGGGCG
TGGTACTTCCCACGGAAAGGCGACAGCGAGACCGCCTGCCCCGAGGCATC
GACCGAGCTCAAAGGGTATCAGCATTTGCTGCCCCCGTAGTCTTCCTGGG
AGGTCCACTGTCCCACTCCCGCCGTTCCGTCTCCCCCTTTCCTTCTTCCC
AACCCTCCTCTTTATTGTCATACTCCACCGCCACCTTTTCGTCGTTGCCG
GGAAGGCGAAGGCGGAGTTGGAGAAGGAACCGTTTTTCGGAACTATATTG
GGAAGGTCCTTCTTCGTGTTCTTCGTGTCACGGGTACTCATCGTTATCAC
CGTTGTCATCATGTTCCCAACTGGAAGAACCTTCTTCGTTGTTGCCGCCG
GGGAGAAGGTTATTCCATTGCTTGCCAACAGCAGCAGTAGGATCAGCAGG
ATCAGTAGGAAGACCAGCGCGCACAGCGACCTCCCACCGTATCACAGGCC
ACTCGCCAACCCGCCGCTACAGCAGCACAATCGGCGACCTCGACACTCAA
TCACCGGGCCAGTTCCGCCGCCCTCGCAGACATTCTCCAATCTCCTCTTC
CACGACCTCCTCCTCAACGTCCTCATTTTTATCTTACCCGCGGTATCATA
CCGCTGGATTACATCGCCTACTCCGGCCGTCGTCATACTCCATCGCTGAA
TCGCTAACGGATTGCTCCTTTTCATCGTCCACTGTCGAAGGAAGCGATAG
CGCCGGCCTCGGCACCGGCGCCAGCGATGAGGTGGTCGACAGCGGGGACG
GCGGAACAGCGGCTGGAAACCGTGCTGGTGACACCAAAGGAGCCAAAAGG
AATGTACGACATATCACCAAGAGTAGTAGTAGCAGCAGCAGCAGCAGCAG
CAGCAGCGGCAGTAGCAGGAGCCGCAGGGGCGGTGATGTTGGTGGTGGTG
GATGGACTGCGGGTCGGAGAAGGTATGGTAGCGTGATGCTCACGGGAGGT
GTTAGGAGCGGGGGGACTCTGGTGAACATGTTTCGACCGTTGCTGGACGA
GCTCGACGGGGCGAGAGGCTCGAGGCAGACTGGGGCAGCGGCGATGCGGG
TGTTGAGGGCTGGGGATGAGGCTGGGTGGGAGGGCGTG

mRNA_H-paniculata_contig10988.639.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

ZOOM

x 1

POSITION

0