mRNA_H-paniculata_contig23646.6390.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23646.6390.1
Unique NamemRNA_H-paniculata_contig23646.6390.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: D8LI72_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI72_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 8.750e-48
Identity = 74/111 (66.67%), Postives = 87/111 (78.38%), Query Frame = 1
Query:   31 RPRSESSTRLHCHVVDDHCDALRHIHAAIRRHAVPFANLAMVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQFLDGRYR 363
            R R+  +  L C++VDDHCDAL  IH AIR  A+PF  L+ VHFDAHPDLMVTPDMPAE CF P +LYD L   EGGIAEWILP+V+QGHLS LWW+RP+WA+QF DG +R
Sbjct:    9 RKRARPTPSLRCYIVDDHCDALSKIHRAIRNGALPFTGLSAVHFDAHPDLMVTPDMPAETCFRPHELYDTLAQTEGGIAEWILPLVYQGHLSTLWWVRPRWARQFTDGDHR 119          
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: A0A835Z3T2_9STRA (UPF0489 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T2_9STRA)

HSP 1 Score: 134 bits (337), Expect = 8.180e-38
Identity = 58/99 (58.59%), Postives = 71/99 (71.72%), Query Frame = 1
Query:   64 CHVVDDHCDALRHIHAAIRRHAVPFANLAMVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQFLDGRY 360
            CHVV+DH DAL   H A+RR  +    + MVH DAHPDL VT DM A++CF PR LYD L  + GGIAEWI+P+V++GHL  +WW+RP WA QF DG Y
Sbjct:   18 CHVVEDHHDALPFWHLAMRRKRLAQQGITMVHIDAHPDLCVTEDMQADICFQPRALYDALDNSVGGIAEWIIPLVYEGHLDTIWWLRPPWADQFTDGTY 116          
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: A0A7S1GEV3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GEV3_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.880e-31
Identity = 61/114 (53.51%), Postives = 77/114 (67.54%), Query Frame = 1
Query:   22 RKRRPRSESSTRLHCHVVDDHCDALRHIHAAIRRHAVPFAN-LAMVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQFLDGRY 360
            R+R PR     R+   VVDDH DALRHIHA IR   +PFA+  A+VH DAHPDL+  P  PA + F+P  LYD L  ++GGIAEW+LP+V+ GH+  L W+RP WA Q   GR+
Sbjct:   62 RRRAPRVRGPLRVA--VVDDHDDALRHIHAGIRDGTLPFASTFAVVHVDAHPDLLAMPSTPASLAFAPSALYDALADSDGGIAEWMLPLVYAGHVRDLVWVRPPWATQLPRGRH 173          
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: A0A024UGZ0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UGZ0_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.020e-28
Identity = 53/95 (55.79%), Postives = 65/95 (68.42%), Query Frame = 1
Query:   70 VVDDHCDALRHIHAAIRRHAVPFANLAMVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQFLDG 354
            VVDDH  AL  IH AIRR  +PFAN  +VHFDAHPDL    D+PA+  F+P  LYDVL  +E GIA ++LP+ F GH+  L W++P WAQQ   G
Sbjct:    9 VVDDHHHALEPIHQAIRRRVLPFANWTLVHFDAHPDLAFPRDVPAKSVFTPSQLYDVLDASEAGIASFVLPLSFAGHMESLIWVKPPWAQQMTLG 103          
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: W4GB50_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GB50_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.030e-27
Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 1
Query:   49 STRLHCHVVDDHCDALRHIHAAIRRHAVPFANLAMVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQFLDG 354
            S +L   VVDDH   L  IH AIR+  +PF+N  +VHFDAHPDL    D+PA   F+P  LYD L ++E GIA ++LP+ F GH+  L W++P WA Q   G
Sbjct:    3 SKQLRVIVVDDHHHVLEPIHQAIRKRTLPFSNWTLVHFDAHPDLAFPRDIPASCVFTPSALYDALDSSEAGIASFLLPLAFAGHMGSLVWVKPPWANQMAMG 104          
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: A0A397F6J6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F6J6_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.260e-27
Identity = 50/98 (51.02%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   49 STRLHCHVVDDHCDALRHIHAAIRRHAVPFANLAMVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQ 342
            S +L   VVDDH   L  IH AIR+  +PF+N  +VHFDAHPDL    D+PA   F+P  LYD L ++E GIA +ILP+ F GH+  L W++P WA Q
Sbjct:    3 SKQLRVIVVDDHHHVLEPIHQAIRKRTLPFSNWTLVHFDAHPDLAFPRDIPASCVFTPSALYDALDSSEAGIASFILPLAFAGHMGSLVWVKPPWANQ 100          
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: A0A1Q9CBE7_SYMMI (UPF0489 protein C5orf22-like n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9CBE7_SYMMI)

HSP 1 Score: 108 bits (269), Expect = 2.060e-27
Identity = 55/116 (47.41%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   28 RRPRSESSTR---LHCHVVDDHCDALRHIHAAIRRHAVPFANLAMVHFDAHPDLMVTPDMPAEVCF-SPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQFLDGRYR 363
            R P +E+  R   L   V + H +ALR +H  IRR  +PF +LAMVH DAHPDL  +  + A+  + SP ++Y  L   +GGIA+WILP V+ GHLS +WW+RP  +QQ  DG YR
Sbjct:   31 RAPEAEAKRRKGPLPVFVCEYHDEALRFLHFCIRRRKIPFGDLAMVHLDAHPDLSASTQLEADRIYDSPLEVYAALREEDGGIAQWILPAVYGGHLSSVWWVRPPGSQQISDGTYR 146          
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: A0A3L6VA98_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VA98_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.930e-27
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   49 STRLHCHVVDDHCDALRHIHAAIRRHAVPFANLAMVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQ 342
            S +L   VVDDH   L  IH AIR+  +PF+N  +VHFDAHPDL    D+PA   F+P  LYD L ++E GIA ++LP+ F GH+  L W++P WA Q
Sbjct:    3 SKQLRVIVVDDHHHVLEPIHQAIRKRTLPFSNWTLVHFDAHPDLAFPRDIPASCVFTPSALYDALDSSEAGIASFLLPLAFAGHMGSLVWVKPPWANQ 100          
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: A0A425DMR2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DMR2_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.410e-26
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   49 STRLHCHVVDDHCDALRHIHAAIRRHAVPFANLAMVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQ 342
            S +L   VVDDH   L  IH AIR+  +PF+N  +VHFDAHPDL    D+PA   F+P  LYD L ++E GIA ++LP+ F GH+  L W++P WA Q
Sbjct:    3 SKQLRVIVVDDHHHVLEPIHQAIRKRTLPFSNWTLVHFDAHPDLAFPRDIPASCVFTPSALYDALDSSEAGIASFLLPLAFAGHMGSLVWVKPPWANQ 100          
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: A0A2R5G5M2_9STRA (UPF0489 protein C5orf22 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5M2_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.720e-26
Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 1
Query:   67 HVVDDHCDALRHIHAAIRRHAVPFANLAMVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQFLDGRY 360
            +V  DH +AL  +HAAIR   V F+ LAM+H D+HPDLMV P MPA++ F PR+L+  L  +E GIAE+ILP V+ GHL +L W+RP WA Q  DG++
Sbjct:   45 YVSGDHNEALESLHAAIRVGEVAFSGLAMLHVDSHPDLMVPPRMPADLVFKPRELHWELAKSETGIAEFILPAVYAGHLERLVWLRPTWADQLPDGQW 142          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI72_ECTSI8.750e-4866.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z3T2_9STRA8.180e-3858.59UPF0489 domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S1GEV3_9STRA1.880e-3153.51Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A024UGZ0_9STRA6.020e-2855.79Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4GB50_9STRA1.030e-2749.02Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A397F6J6_9STRA1.260e-2751.02Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A1Q9CBE7_SYMMI2.060e-2747.41UPF0489 protein C5orf22-like n=2 Tax=Symbiodinium ... [more]
A0A3L6VA98_9STRA5.930e-2750.00Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A425DMR2_9STRA2.410e-2650.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A2R5G5M2_9STRA3.720e-2654.08UPF0489 protein C5orf22 n=1 Tax=Hondaea fermentalg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23646contigH-paniculata_contig23646:1500..1865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score170.2
Seed ortholog evalue5.8e-40
Seed eggNOG ortholog2880.D8LI72
Preferred nameC5orf22
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0009966,GO:0009968,GO:0010646,GO:0010648,GO:0023051,GO:0023057,GO:0046578,GO:0046580,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051056,GO:0051058,GO:0065007,GO:1902531,GO:1902532
EggNOG free text desc.UPF0489 domain
EggNOG OGs28PEW@1,2QW2U@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size366
Cds size366
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929672.7078779-CDS-H-paniculata_contig23646:1499..18651622929672.7078779-CDS-H-paniculata_contig23646:1499..1865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23646 1500..1865 -
1691480961.089875-CDS-H-paniculata_contig23646:1499..18651691480961.089875-CDS-H-paniculata_contig23646:1499..1865Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23646 1500..1865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23646.6390.1prot_H-paniculata_contig23646.6390.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23646 1500..1865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23646.6390.1

>prot_H-paniculata_contig23646.6390.1 ID=prot_H-paniculata_contig23646.6390.1|Name=mRNA_H-paniculata_contig23646.6390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MTPVLNKRKRRPRSESSTRLHCHVVDDHCDALRHIHAAIRRHAVPFANLA
MVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGH
LSKLWWIRPKWAQQFLDGRYR*
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mRNA from alignment at H-paniculata_contig23646:1500..1865-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23646.6390.1 ID=mRNA_H-paniculata_contig23646.6390.1|Name=mRNA_H-paniculata_contig23646.6390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig23646:1500..1865- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCCCGTCCTCAACAAGCGCAAAAGACGACCACGGTCAGAATCATC GACACGTCTTCATTGCCATGTTGTCGATGACCACTGCGATGCTCTGAGGC ATATACATGCAGCCATTCGGCGCCATGCCGTGCCCTTTGCCAACCTTGCT ATGGTGCACTTTGATGCGCATCCGGACTTGATGGTCACGCCCGACATGCC GGCGGAGGTCTGCTTCAGTCCCCGCGATCTCTACGACGTCTTGGGCACGG CAGAAGGGGGTATTGCGGAATGGATACTACCTATGGTTTTTCAAGGGCAT TTATCGAAGCTTTGGTGGATTAGGCCGAAGTGGGCGCAGCAGTTCCTCGA TGGCAGATACCGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig23646:1500..1865-

>mRNA_H-paniculata_contig23646.6390.1 ID=mRNA_H-paniculata_contig23646.6390.1|Name=mRNA_H-paniculata_contig23646.6390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig23646:1500..1865- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCCCGTCCTCAACAAGCGCAAAAGACGACCACGGTCAGAATCATC
GACACGTCTTCATTGCCATGTTGTCGATGACCACTGCGATGCTCTGAGGC
ATATACATGCAGCCATTCGGCGCCATGCCGTGCCCTTTGCCAACCTTGCT
ATGGTGCACTTTGATGCGCATCCGGACTTGATGGTCACGCCCGACATGCC
GGCGGAGGTCTGCTTCAGTCCCCGCGATCTCTACGACGTCTTGGGCACGG
CAGAAGGGGGTATTGCGGAATGGATACTACCTATGGTTTTTCAAGGGCAT
TTATCGAAGCTTTGGTGGATTAGGCCGAAGTGGGCGCAGCAGTTCCTCGA
TGGCAGATACCGGTGAATGACGCCCGTCCTCAACAAGCGCAAAAGACGAC
CACGGTCAGAATCATCGACACGTCTTCATTGCCATGTTGTCGATGACCAC
TGCGATGCTCTGAGGCATATACATGCAGCCATTCGGCGCCATGCCGTGCC
CTTTGCCAACCTTGCTATGGTGCACTTTGATGCGCATCCGGACTTGATGG
TCACGCCCGACATGCCGGCGGAGGTCTGCTTCAGTCCCCGCGATCTCTAC
GACGTCTTGGGCACGGCAGAAGGGGGTATTGCGGAATGGATACTACCTAT
GGTTTTTCAAGGGCATTTATCGAAGCTTTGGTGGATTAGGCCGAAGTGGG
CGCAGCAGTTCCTCGATGGCAGATACCGGTGA
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