mRNA_H-paniculata_contig23646.6390.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: D8LI72_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI72_ECTSI) HSP 1 Score: 168 bits (426), Expect = 8.750e-48 Identity = 74/111 (66.67%), Postives = 87/111 (78.38%), Query Frame = 1
Query: 31 RPRSESSTRLHCHVVDDHCDALRHIHAAIRRHAVPFANLAMVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQFLDGRYR 363
R R+ + L C++VDDHCDAL IH AIR A+PF L+ VHFDAHPDLMVTPDMPAE CF P +LYD L EGGIAEWILP+V+QGHLS LWW+RP+WA+QF DG +R
Sbjct: 9 RKRARPTPSLRCYIVDDHCDALSKIHRAIRNGALPFTGLSAVHFDAHPDLMVTPDMPAETCFRPHELYDTLAQTEGGIAEWILPLVYQGHLSTLWWVRPRWARQFTDGDHR 119
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: A0A835Z3T2_9STRA (UPF0489 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T2_9STRA) HSP 1 Score: 134 bits (337), Expect = 8.180e-38 Identity = 58/99 (58.59%), Postives = 71/99 (71.72%), Query Frame = 1
Query: 64 CHVVDDHCDALRHIHAAIRRHAVPFANLAMVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQFLDGRY 360
CHVV+DH DAL H A+RR + + MVH DAHPDL VT DM A++CF PR LYD L + GGIAEWI+P+V++GHL +WW+RP WA QF DG Y
Sbjct: 18 CHVVEDHHDALPFWHLAMRRKRLAQQGITMVHIDAHPDLCVTEDMQADICFQPRALYDALDNSVGGIAEWIIPLVYEGHLDTIWWLRPPWADQFTDGTY 116
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: A0A7S1GEV3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GEV3_9STRA) HSP 1 Score: 122 bits (305), Expect = 1.880e-31 Identity = 61/114 (53.51%), Postives = 77/114 (67.54%), Query Frame = 1
Query: 22 RKRRPRSESSTRLHCHVVDDHCDALRHIHAAIRRHAVPFAN-LAMVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQFLDGRY 360
R+R PR R+ VVDDH DALRHIHA IR +PFA+ A+VH DAHPDL+ P PA + F+P LYD L ++GGIAEW+LP+V+ GH+ L W+RP WA Q GR+
Sbjct: 62 RRRAPRVRGPLRVA--VVDDHDDALRHIHAGIRDGTLPFASTFAVVHVDAHPDLLAMPSTPASLAFAPSALYDALADSDGGIAEWMLPLVYAGHVRDLVWVRPPWATQLPRGRH 173
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: A0A024UGZ0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UGZ0_9STRA) HSP 1 Score: 114 bits (284), Expect = 6.020e-28 Identity = 53/95 (55.79%), Postives = 65/95 (68.42%), Query Frame = 1
Query: 70 VVDDHCDALRHIHAAIRRHAVPFANLAMVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQFLDG 354
VVDDH AL IH AIRR +PFAN +VHFDAHPDL D+PA+ F+P LYDVL +E GIA ++LP+ F GH+ L W++P WAQQ G
Sbjct: 9 VVDDHHHALEPIHQAIRRRVLPFANWTLVHFDAHPDLAFPRDVPAKSVFTPSQLYDVLDASEAGIASFVLPLSFAGHMESLIWVKPPWAQQMTLG 103
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: W4GB50_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GB50_9STRA) HSP 1 Score: 107 bits (267), Expect = 1.030e-27 Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 1
Query: 49 STRLHCHVVDDHCDALRHIHAAIRRHAVPFANLAMVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQFLDG 354
S +L VVDDH L IH AIR+ +PF+N +VHFDAHPDL D+PA F+P LYD L ++E GIA ++LP+ F GH+ L W++P WA Q G
Sbjct: 3 SKQLRVIVVDDHHHVLEPIHQAIRKRTLPFSNWTLVHFDAHPDLAFPRDIPASCVFTPSALYDALDSSEAGIASFLLPLAFAGHMGSLVWVKPPWANQMAMG 104
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: A0A397F6J6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F6J6_9STRA) HSP 1 Score: 107 bits (266), Expect = 1.260e-27 Identity = 50/98 (51.02%), Postives = 64/98 (65.31%), Query Frame = 1
Query: 49 STRLHCHVVDDHCDALRHIHAAIRRHAVPFANLAMVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQ 342
S +L VVDDH L IH AIR+ +PF+N +VHFDAHPDL D+PA F+P LYD L ++E GIA +ILP+ F GH+ L W++P WA Q
Sbjct: 3 SKQLRVIVVDDHHHVLEPIHQAIRKRTLPFSNWTLVHFDAHPDLAFPRDIPASCVFTPSALYDALDSSEAGIASFILPLAFAGHMGSLVWVKPPWANQ 100
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: A0A1Q9CBE7_SYMMI (UPF0489 protein C5orf22-like n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9CBE7_SYMMI) HSP 1 Score: 108 bits (269), Expect = 2.060e-27 Identity = 55/116 (47.41%), Postives = 74/116 (63.79%), Query Frame = 1
Query: 28 RRPRSESSTR---LHCHVVDDHCDALRHIHAAIRRHAVPFANLAMVHFDAHPDLMVTPDMPAEVCF-SPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQFLDGRYR 363
R P +E+ R L V + H +ALR +H IRR +PF +LAMVH DAHPDL + + A+ + SP ++Y L +GGIA+WILP V+ GHLS +WW+RP +QQ DG YR
Sbjct: 31 RAPEAEAKRRKGPLPVFVCEYHDEALRFLHFCIRRRKIPFGDLAMVHLDAHPDLSASTQLEADRIYDSPLEVYAALREEDGGIAQWILPAVYGGHLSSVWWVRPPGSQQISDGTYR 146
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: A0A3L6VA98_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VA98_9STRA) HSP 1 Score: 106 bits (264), Expect = 5.930e-27 Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 1
Query: 49 STRLHCHVVDDHCDALRHIHAAIRRHAVPFANLAMVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQ 342
S +L VVDDH L IH AIR+ +PF+N +VHFDAHPDL D+PA F+P LYD L ++E GIA ++LP+ F GH+ L W++P WA Q
Sbjct: 3 SKQLRVIVVDDHHHVLEPIHQAIRKRTLPFSNWTLVHFDAHPDLAFPRDIPASCVFTPSALYDALDSSEAGIASFLLPLAFAGHMGSLVWVKPPWANQ 100
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: A0A425DMR2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DMR2_9STRA) HSP 1 Score: 106 bits (264), Expect = 2.410e-26 Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 1
Query: 49 STRLHCHVVDDHCDALRHIHAAIRRHAVPFANLAMVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQ 342
S +L VVDDH L IH AIR+ +PF+N +VHFDAHPDL D+PA F+P LYD L ++E GIA ++LP+ F GH+ L W++P WA Q
Sbjct: 3 SKQLRVIVVDDHHHVLEPIHQAIRKRTLPFSNWTLVHFDAHPDLAFPRDIPASCVFTPSALYDALDSSEAGIASFLLPLAFAGHMGSLVWVKPPWANQ 100
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Match: A0A2R5G5M2_9STRA (UPF0489 protein C5orf22 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5M2_9STRA) HSP 1 Score: 110 bits (276), Expect = 3.720e-26 Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 1
Query: 67 HVVDDHCDALRHIHAAIRRHAVPFANLAMVHFDAHPDLMVTPDMPAEVCFSPRDLYDVLGTAEGGIAEWILPMVFQGHLSKLWWIRPKWAQQFLDGRY 360
+V DH +AL +HAAIR V F+ LAM+H D+HPDLMV P MPA++ F PR+L+ L +E GIAE+ILP V+ GHL +L W+RP WA Q DG++
Sbjct: 45 YVSGDHNEALESLHAAIRVGEVAFSGLAMLHVDSHPDLMVPPRMPADLVFKPRELHWELAKSETGIAEFILPAVYAGHLERLVWLRPTWADQLPDGQW 142 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23646.6390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig23646.6390.1 >prot_H-paniculata_contig23646.6390.1 ID=prot_H-paniculata_contig23646.6390.1|Name=mRNA_H-paniculata_contig23646.6390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp MTPVLNKRKRRPRSESSTRLHCHVVDDHCDALRHIHAAIRRHAVPFANLAback to top mRNA from alignment at H-paniculata_contig23646:1500..1865- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig23646.6390.1 ID=mRNA_H-paniculata_contig23646.6390.1|Name=mRNA_H-paniculata_contig23646.6390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig23646:1500..1865- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig23646:1500..1865- >mRNA_H-paniculata_contig23646.6390.1 ID=mRNA_H-paniculata_contig23646.6390.1|Name=mRNA_H-paniculata_contig23646.6390.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig23646:1500..1865- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |