mRNA_H-paniculata_contig236.6374.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig236.6374.1
Unique NamemRNA_H-paniculata_contig236.6374.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: D8LHP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 2.480e-83
Identity = 220/401 (54.86%), Postives = 243/401 (60.60%), Query Frame = 1
Query:  298 VLLLESGVRFHTTRFTHTKSDMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYDGQRD-----------EGD-VRVAVRQIYPMDLATTQEGTPTASVVTALSTAAEGVGGEKNEGA----------AAAAAVVVSEMSMDAEVAFSNGMPTEVAMQRMGDWLQRAAVLAAEPPXXXXXXXXXXXXXXXXXXXXXXXXXXXRKA------------------------KKATLKQALMQKGSGVSVYGPSVLEHCVLGAGLRPNAKLSAVGALSAATPAAVSGTSSGDTSTAIPAANTTAAEDSHAKALVAEPCCR------RGGFSEDEIRRLVIALAGADATVQQLDRPGQQGYILCKPL 1344
            +LLLESGVRFHTT+FTHTKSDMPSGFSMKLRKHIRT+RLEDVRQVGMDRVVDFKFGSG+ +NH+ILELYA GN+ILTD KYEILDLLRTH Y+GQ              GD VRVAVRQIYPM+LATTQEGT     +                               AA    +   +A  AF NG P EV ++RM +WL+RAA       XXXXXXXXXXXXXXXXXXXXXXXXXXX                           KKATLKQALMQKGSGVSVYGPS++EHCVL AGLRPNAKL         TP   SG                AA             C       R G SED++R LV+AL GA+A VQQLDRPGQ+GYI CKPL
Sbjct:    1 MLLLESGVRFHTTKFTHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGKASNHVILELYASGNIILTDSKYEILDLLRTHIYEGQGGGAAGGSGATGGAGDNVRVAVRQIYPMELATTQEGTTAVPQLPXXXXXXXXXXXXXXXXXXXXXXXXXRYGRVAAPEDQQREEEAPGAFVNGTPLEVGVRRMSEWLERAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKKATLKQALMQKGSGVSVYGPSIIEHCVLAAGLRPNAKL---------TPDGSSG-------------GVHAAXXXXXXXXXXXXXCSGNGGELRAGLSEDDVRELVVALGGAEAIVQQLDRPGQRGYIQCKPL 379          
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: A0A835ZCK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK8_9STRA)

HSP 1 Score: 269 bits (688), Expect = 9.660e-76
Identity = 204/438 (46.58%), Postives = 240/438 (54.79%), Query Frame = 1
Query:  154 KTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAVLLLESGVRFHTTRFTHTKSDMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYDGQRDEGDVRVAVRQIYPMDLATTQEGTPTASVVTALSTAAEGVGGEKNEGAAAAAAVVVSEMSMDAEV-------------------------------------AFSNGMPTEVAMQRMGDWLQRAAVLAAEPPXXXXXXXXXXXXXXXXXXXXXXXXXXXRKAKKATLKQALMQKGSGVSVYGPSVLEHCVLGAGLRPNAKLSAVGALSAATPAAVSGTSSGDTSTAIPAANTTAAEDSHAKALVAEPCCRRGGFSEDEIRRLVIALAGADATVQQLDRPGQQGYILCKPLGGKG 1356
            K+RF+A DVRAMVRDLRAS  GLRV+NVYDLDSKT+L KLA+PG+EKAVLLLESG RFHTTRF+H KSDMPS FSMKLRKHI+ KRLED+RQ+  DRVVDFKFGSG+ A HIILELYA GN+ILTD KYE+L LLRTH+Y       D  VAVRQIYP+  AT Q+G  T +    LS+AA      K      A  V  ++ + +A+                                      A   G                 A +A + PXXXXXXXXXXXXXXXXX              K TL+Q LM+KGS +SV+GPSV++HCVL AGLRP  ++          P  VS                                      SE E+  LV AL GA     +LDRPGQ+GYIL    G KG
Sbjct:    2 KSRFSATDVRAMVRDLRASSLGLRVINVYDLDSKTFLIKLANPGREKAVLLLESGTRFHTTRFSHDKSDMPSAFSMKLRKHIKAKRLEDIRQLAFDRVVDFKFGSGDAACHIILELYASGNIILTDSKYEVLQLLRTHSYGA-----DALVAVRQIYPVAHATAQDGGRTEAEEGPLSSAAALRAWMKEN---MAQIVAEADAAQEAKAXXXXXXXXXXTXXXXXXXXXXXXXXXXXXXXXRSSGQAAKGGKTAXXXXXXXXXXXXXXAAIAGKAPXXXXXXXXXXXXXXXXX-------------SKVTLRQLLMRKGSTLSVHGPSVVDHCVLVAGLRPGLRV----------PPDVS------------------------------------SLSEGEMEGLVAALRGAAGVAAELDRPGQEGYILYTEQGEKG 372          
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: A0A6U1AHC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA)

HSP 1 Score: 243 bits (621), Expect = 6.630e-67
Identity = 149/312 (47.76%), Postives = 185/312 (59.29%), Query Frame = 1
Query:  148 MTKTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAVLLLESGVRFHTTRFTHTKSDMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYDGQRDEGDVRVAVRQIYPMDLATTQEGTPTASVVTALSTAAEGVGGEKNEGAAAAAAVVVSEMSMDAEVAFSNGMPTEVAMQRMGDWLQRAAVLAAEPPXXXXXXXXXXXXXXXXXXXXXXXXXXXRKAKKATLKQALMQKGSGVSVYGPSVLEHCVLGAGLRPNAKLSA 1083
            M K+RF+AADVRA VRDLR  V G+R VNVYD+DSKTYLFKLA+PG EK VLLLESGVRFH+T +   K+DMPSGFSMKLRKHIR KRLE++ Q+G+DRVVDF+FGSG   +HIILE+YA GN+ILTDH Y IL +LR+H +D          AV Q+YP+  ATT            L+ AA   GG + +G       +  E S D+   F                 Q AAV  A                               KA+K TLKQ LM +GSG++ YG  +++HC+L AGL PN K++A
Sbjct:    1 MVKSRFSAADVRATVRDLRGRVLGMRCVNVYDIDSKTYLFKLANPGTEKVVLLLESGVRFHSTSYARDKADMPSGFSMKLRKHIRAKRLENIAQLGIDRVVDFRFGSGTECHHIILEMYAAGNIILTDHSYSILAVLRSHKFDETAS-----TAVNQLYPIAHATT------------LAAAA---GGGEADGEGGTTGPLTQESSPDSLREFIRA--------------QVAAVSEA--------------------------GTKSNKARKLTLKQVLMTRGSGMAQYGIDIIQHCILTAGLNPNMKMNA 252          
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: K8Z908_NANGC (Zinc knuckle (Cchc-type) family protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z908_NANGC)

HSP 1 Score: 214 bits (546), Expect = 3.370e-61
Identity = 161/431 (37.35%), Postives = 204/431 (47.33%), Query Frame = 1
Query:  148 MTKTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAVLLLESGVRFHTTRFTHTKS---DMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYD------------------------GQRDEGDVRVAVRQIYPMDLATTQEGTPTASVVTALSTAAEGVGGEKNEGAAAAAAVVVSEMSMDAEVAFSNGMPTEVAMQRMGDWLQRAAVLAAEPPXXXXXXXXXXXXXXXXXXXXXXXXXXXRKAKKATLKQALM-QKGSGVSVYGPSVLEHCVLGAGLRPNAKLSAVGALSAATPAAVSGTSSGDTSTAIPAANTTAAEDSHAKALVAEPCCRRGGFSEDEIRRLVIALAGADATVQQLDRPGQQGYILCKPLGGKG 1356
            M KT+FT  DVRAMVRDLR  V GL+VVN+YD+D++TY FKLA PG EK  LLLESG RFHTT +   +S   ++P+ F+MKLRK++R K LEDVRQ+GMDRVV F+FG GE A H+ILELYA GNL+LTD  Y IL LLRTH YD                        G+ +E    V V  +YP+  A+            AL+      G EK+ GA             D     +    T +A       L+   V                                     K  LK ALM  K   +S  GP+++EH VL AGLRP  +L                          PA+     ED        E   +R G +E+E  RL  A+ G D  +++LD PGQ+GYILC+   G G
Sbjct:    1 MVKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDIDNRTYTFKLAVPGGEKVTLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYDQGPEKAVDGEVVGKDAEAGAGTVEGRVEESGRVVRVGHVYPLAFASN-----------ALAATRSSAGVEKDAGA-----------KQDPPPWLAVTAETVLAA------LREVVVREKGKAGKEGNGTSSMAQGGKRGRTKRGGQAGASARSKVNLKMALMTSKTLDLSALGPAIVEHAVLEAGLRPLLRLMP------------------------PASAVALGEDEE------EGEGQREGLTEEEAARLAEAVQGLDGRLRRLDLPGQEGYILCRKADGAG 373          
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: A0A4D9CTN6_9STRA (NFACT-R_1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTN6_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.570e-56
Identity = 162/430 (37.67%), Postives = 209/430 (48.60%), Query Frame = 1
Query:  148 MTKTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAVLLLESGVRFHTTRFTHTKS---DMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYD------------------------GQRDEGDVRVAVRQIYPMDLATTQEGTPTASVVTALSTAAEGVGGEKNEGAAAAAAVVVSEMSMDAEVAFSNGMPTEVAMQRMGDWLQRAAVLAAEPPXXXXXXXXXXXXXXXXXXXXXXXXXXXRKAK-KATLKQALM-QKGSGVSVYGPSVLEHCVLGAGLRPNAKLSAVGALSAATPAAVSGTSSGDTSTAIPAANTTAAEDSHAKALVAEPCCRRGGFSEDEIRRLVIALAGADATVQQLDRPGQQGYILCKPLGG 1350
            M KT+FT  DVRAMVRDLR  V GL+V+N+YD+D++TY FKLA PG EK  LLLESG RFHTT +   +S   ++PS F+MKLRK++R K LEDVRQ+GMDRVV F+FG GE A H+ILELYA GNL+LTD  Y IL LLRTH Y+                        G+ +E    V V  +YP+  A+            AL+        EK+ GA           ++D     +    T +A  R         V+  E                               A+ K  LK ALM  K   +S  GP+++EH VL AGLRP  +L       A+T A V G   G+                           RR G +E+E  RL  A+ G D  +++LD PGQ+GYILC+   G
Sbjct:    1 MVKTKFTTPDVRAMVRDLRTRVLGLKVINIYDIDNRTYTFKLAVPGGEKVTLLLESGARFHTTAYARERSVPGELPSVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYEQGPDKAVDGEVVGNDAEAGPGMGEGRVEESGRVVRVGHVYPLAFASN-----------ALAATRSSAAVEKDAGA-----------NLDPPPWLAVTAETVLAALR-------EVVVREEGKAGKEGNGTSSMAQGAKRGRTKRGGQAGASARSKVNLKMALMTSKTLDLSGLGPAIVEHAVLEAGLRPLLRLMPP----ASTVALVEGGEEGEG--------------------------RREGLTEEEAARLAEAVQGLDGRLKRLDLPGQEGYILCRKADG 371          
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: A0A7S1UGR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGR3_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.130e-55
Identity = 100/166 (60.24%), Postives = 124/166 (74.70%), Query Frame = 1
Query:  148 MTKTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAVLLLESGVRFHTTRFTHTKSDMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYDGQRDEGDVRVAVRQIYPMDLATT 645
            M + RF A+DVRAMVRDLR+ + G+RV N+YD+++KTYL KLA PG+++ VLLLESG RFH+TRF   KS MPSGF+MKLRKH+RTKRLED+RQ+G DRVV F FG GE+ N +ILELYAQGN++LT   + IL LLR H Y G          V  +YP+  ATT
Sbjct:    1 MVRQRFDASDVRAMVRDLRSRLLGMRVSNIYDVNAKTYLLKLAEPGRDREVLLLESGSRFHSTRFELDKSAMPSGFAMKLRKHLRTKRLEDLRQLGTDRVVVFTFGIGESTNCLILELYAQGNIVLTAPDFTILALLRVHDYAG-----GAAARVGSVYPLAAATT 161          
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: W7T3P9_9STRA (Fibronectin-binding A protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T3P9_9STRA)

HSP 1 Score: 188 bits (477), Expect = 9.940e-54
Identity = 96/146 (65.75%), Postives = 114/146 (78.08%), Query Frame = 1
Query:  148 MTKTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAVLLLESGVRFHTTRFTHTKS---DMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYD 576
            M KT+FT  DVRAMVRDLR  V GL+VVN+YD+D++TY FKLA PG EK  LLLESG RFHTT +   +S   ++P+ F+MKLRK++R K LEDVRQ+GMDRVV F+FG GE A H+ILELYA GNL+LTD  Y IL LLRTH YD
Sbjct:    1 MVKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDIDNRTYTFKLAVPGGEKVTLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYD 146          
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: A0A7S3J190_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3J190_9SPIT)

HSP 1 Score: 181 bits (459), Expect = 4.250e-50
Identity = 91/158 (57.59%), Postives = 113/158 (71.52%), Query Frame = 1
Query:  154 KTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAVLLLESGVRFHTTRFTHTKSDMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYDGQRDEGDVRVAVRQIYP 627
            K R TA D+RA+V  L+  +  LRV N+YD+ +K YLFKLA+ G  K  LL+E+G+R HTT F   K+ +PSGFSMKLRKH+RTKR+ED+RQVG+DRVVD   G GE A HI++E YA GNLILTD  Y I+ LLRTH YD      D R AV ++YP
Sbjct:    6 KQRLTAIDIRALVMTLKRKIMSLRVANIYDISNKLYLFKLAAKGN-KEFLLIEAGIRMHTTGFVKNKNGIPSGFSMKLRKHLRTKRVEDIRQVGIDRVVDITLGQGEAAYHILIEFYASGNLILTDANYTIISLLRTHRYDE-----DTRCAVGEVYP 157          
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: A0A3B3QMW2_9TELE (Uncharacterized protein n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QMW2_9TELE)

HSP 1 Score: 178 bits (451), Expect = 8.630e-50
Identity = 85/162 (52.47%), Postives = 124/162 (76.54%), Query Frame = 1
Query:  154 KTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAVLLLESGVRFHTTRFTHTKSDMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYDGQRDEGDVRVAVRQIYPMDLA 639
            KTRF   D+RA++ ++ A+  G+RV NVYD+D+KTYL +L  P + KAVLLLESG+R H+T +   K+ MPSGF+MK RKH++++RL  V+Q+G+DR+VD +FGS E A H+I+ELY +GN++LTDH+Y IL+LLR  T + +    DV++AVR+ YP++ A
Sbjct:    2 KTRFNTVDIRAVIAEINATFIGMRVYNVYDIDNKTYLIRLQKP-ESKAVLLLESGIRIHSTEYDWPKNLMPSGFAMKCRKHLKSRRLVSVKQLGIDRIVDMQFGSDEAAYHLIVELYDRGNIVLTDHEYTILNLLRVRTAEAE----DVKIAVRERYPLESA 158          
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: A0A8D0G7Y4_SPHPU (Nuclear export mediator factor n=2 Tax=Sauria TaxID=32561 RepID=A0A8D0G7Y4_SPHPU)

HSP 1 Score: 177 bits (450), Expect = 1.250e-49
Identity = 92/181 (50.83%), Postives = 133/181 (73.48%), Query Frame = 1
Query:  154 KTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAVLLLESGVRFHTTRFTHTKSDMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYDGQRDEGDVRVAVRQIYPMDLATTQEGTPTASVVTALSTAA 696
            K+RF+  D+RA++ +LR+S+ G+RV NVYD+D+KTYL +L  P   KA LLLESG+R HTT F   K+ MPSGF+MK RKH++++RL +V+Q+G+DR+VDF+FGS E A H+I+ELY +GN++LTD++Y IL++LR  T +      DV+ AVR+ YP+D A      PT   +T + +AA
Sbjct:    2 KSRFSTVDIRAVIAELRSSLLGMRVNNVYDVDNKTYLIRLQKPDC-KATLLLESGIRIHTTEFEWPKNMMPSGFAMKCRKHLKSRRLVNVKQLGIDRIVDFQFGSDEAAYHLIIELYDRGNIVLTDYEYLILNILRFRTDEAD----DVKFAVRERYPVDNAKASAPLPTLERLTEIISAA 177          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHP2_ECTSI2.480e-8354.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCK8_9STRA9.660e-7646.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1AHC6_9STRA6.630e-6747.76Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K8Z908_NANGC3.370e-6137.35Zinc knuckle (Cchc-type) family protein (Fragment)... [more]
A0A4D9CTN6_9STRA1.570e-5637.67NFACT-R_1 domain-containing protein n=2 Tax=Monodo... [more]
A0A7S1UGR3_9STRA1.130e-5560.24Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
W7T3P9_9STRA9.940e-5465.75Fibronectin-binding A protein n=1 Tax=Nannochlorop... [more]
A0A7S3J190_9SPIT4.250e-5057.59Hypothetical protein (Fragment) n=1 Tax=Euplotes h... [more]
A0A3B3QMW2_9TELE8.630e-5052.47Uncharacterized protein n=1 Tax=Paramormyrops king... [more]
A0A8D0G7Y4_SPHPU1.250e-4950.83Nuclear export mediator factor n=2 Tax=Sauria TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig236contigH-paniculata_contig236:5196..8896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score294.7
Seed ortholog evalue7.4e-77
Seed eggNOG ortholog2880.D8LHP2
KEGG koko:K10589
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.actin binding
EggNOG OGsCOG1293@1,KOG2030@2759
Ec32 ortholog descriptionDomain of unknown function DUF814
Ec32 orthologEc-26_003870.1
EC2.3.2.26
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons4
Model size1479
Cds size1332
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig236.6374.1prot_H-paniculata_contig236.6374.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig236 5196..8749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929670.8542273-CDS-H-paniculata_contig236:5195..61631622929670.8542273-CDS-H-paniculata_contig236:5195..6163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig236 5196..6163 -
1691480960.2849722-CDS-H-paniculata_contig236:5195..61631691480960.2849722-CDS-H-paniculata_contig236:5195..6163Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig236 5196..6163 -
1622929670.869034-CDS-H-paniculata_contig236:6624..67971622929670.869034-CDS-H-paniculata_contig236:6624..6797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig236 6625..6797 -
1691480960.3024566-CDS-H-paniculata_contig236:6624..67971691480960.3024566-CDS-H-paniculata_contig236:6624..6797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig236 6625..6797 -
1622929670.8828826-CDS-H-paniculata_contig236:7794..78771622929670.8828826-CDS-H-paniculata_contig236:7794..7877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig236 7795..7877 -
1691480960.3231206-CDS-H-paniculata_contig236:7794..78771691480960.3231206-CDS-H-paniculata_contig236:7794..7877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig236 7795..7877 -
1622929670.8972769-CDS-H-paniculata_contig236:8641..87491622929670.8972769-CDS-H-paniculata_contig236:8641..8749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig236 8642..8749 -
1691480960.3350186-CDS-H-paniculata_contig236:8641..87491691480960.3350186-CDS-H-paniculata_contig236:8641..8749Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig236 8642..8749 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929670.9095297-UTR-H-paniculata_contig236:8749..88961622929670.9095297-UTR-H-paniculata_contig236:8749..8896Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig236 8750..8896 -
1691480960.3507967-UTR-H-paniculata_contig236:8749..88961691480960.3507967-UTR-H-paniculata_contig236:8749..8896Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig236 8750..8896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig236.6374.1

>prot_H-paniculata_contig236.6374.1 ID=prot_H-paniculata_contig236.6374.1|Name=mRNA_H-paniculata_contig236.6374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=444bp
MTKTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKA
VLLLESGVRFHTTRFTHTKSDMPSGFSMKLRKHIRTKRLEDVRQVGMDRV
VDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYDGQRDEGD
VRVAVRQIYPMDLATTQEGTPTASVVTALSTAAEGVGGEKNEGAAAAAAV
VVSEMSMDAEVAFSNGMPTEVAMQRMGDWLQRAAVLAAEPPPAPATEVEA
ADGGSGGNRKKGKGGGGSRKAKKATLKQALMQKGSGVSVYGPSVLEHCVL
GAGLRPNAKLSAVGALSAATPAAVSGTSSGDTSTAIPAANTTAAEDSHAK
ALVAEPCCRRGGFSEDEIRRLVIALAGADATVQQLDRPGQQGYILCKPLG
GKGAASAATAGGDGGVAHGARADFGGDGKEDMPKQGEGGKQKAV
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mRNA from alignment at H-paniculata_contig236:5196..8896-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig236.6374.1 ID=mRNA_H-paniculata_contig236.6374.1|Name=mRNA_H-paniculata_contig236.6374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3701bp|location=Sequence derived from alignment at H-paniculata_contig236:5196..8896- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACTAGTTGTCAGGTTCCAAATCAATTAAAACAACCATTTTTCGAACCT AGTTCTCAGCAGAACCTTCTCTTTCGTGTGACGGATTTTTCGCGCTCAAA GACCTGACTAGCTGAGGAAGCAATAGAGTATCCGGGATAGAGAAGCCATG ACGAAAACACGATTTACGGCTGCAGATGTTAGGGCTATGGTCAGGGACTT GAGGGCGTCCGTGCATGGCCTACGCGTAGTAAACGTGTACGACCTCGACT CAAAGGTGAAAATTACCAATAACGTACCGCGGGACATTGCATGTGCAATA GACATTATCTGGACATAGACGACAACGACTTAACAGGGTGAAGTACGACG TTGCAGCACATTGTTGTCCTTGACGCTTGTACTCTGTGCTGTTCTGCCAT TTGTGCAAACAGGTTCTCATGGCAATATAGGTTACGTAAATCAAGTTCGC AAATAGTATGCGTGTAAGTCGGTCTGTGCCGCTGCTCAACGCGTTCGTTT TTCAGGTGATCACGATATCGTTCCATCTATATGTAAGCACAGGAGCGAAC CAGTGTTGGTGAGGCGTGATTGCCCCTGGGACAAATTAACCTCGCAATAA GCAAGCTGCATTTGCCCCGAAACCCCCTACGGTGTAGGCGGTGATGCAGC CGGCACCGTCGGTCGCAAATGTCGCCAACACAGCCCCGCCTGAGTGAACT CCTGGCGGTGATGATGCGGTCAACCCTGATGAAAACCACAGTCATCACCC ATGATGTCGTGGTAACCATCAGCGATGGCGCGCCCCTTCAACATAAGATT CGGGGCGTGCCAAATCGAAGCGCTAGCGGAATGATGGCTGTTGTATACAG TGCCAACAGTACCGAGGGTGCTCGTTCATCTCAACATCTTTAATGCTCCG CGTGTGCCAGCCGCAGCCGCGTTGTTCAGATGTTCACAAATCTCCACGTG ATTTTGACTTGGGAGTCGTTACTGCGTTATCTATCTGCTGCTGCATCCTT TGCTGTCCTTCGCCTGCAGACGTACTTGTTCAAGCTGGCCAGTCCGGGGC AGGAAAAAGCGGTTCTCTTGCTGGAATCCGGGGTCCGCTTTCATACCACT AGGTGAGTCTGAGAGGAACACTCGCCGGATTTGTTCCCCAGGAACCAGAT TTTCAGAAACGTTCCGGCTTTGCCCCATTGGTCACATCTCGCGGGCCTGC GCAGAAAGATGTTGCAGAATTGGAGTGAATCAGCTCCGCTTGGCACGGGA AGTTGTTATTTTCGTAGAGACATGGGCTTTCACTCAGTGAGGAGAAAAAA ATGAACAAAAAACGTGCTTTTGAGGGCAGCAAGGGACACCCGCTCCCTAG GCAACCTCTTTGAACAGTCCTGGCGATCTTCCAGTATTTCGCAGGTCGAT TCTCCTACCGGTTTGGTTCTCCTGCATCTCTCCTTAGCCCCAAAGAGCGG TGATACCTAGACCCCAAGGAGCAAAAATACGAAAATCTTTCATCTCTTGA ACCAAATTTACCGCGAATTGCCAACGGTGGGTGTGTTGGGCGGACCTACC GATCGTTAACAGCCAGTATCGGCGAGCATAGCTCGCTGGGTATCCGCCGT CTTGAAGCAGGACATGGTCGCCATTTTGACACTAAGTGATCGGTGAGACA CCCCCGCCGTTTCTCTTTGTATCGCACCTGACCTACCGTATCCGCTCCGC ACGTTTGTGCGAAAATTCCCGGATGCTTTCATGCTCTCATCACGTTCCGT GGCCTTCTGGAAACTTGAAAAATTCGACGGCCAGTATTCAGTATCACAGC GCCACAGCGATCGGGGGGAGGGGGCAAACAGAAAAAACTAGGGCAGGGGG GGTTGAAAACATGCTTTCAACGACATAAAAAAATGGAGGTATGCTCAGAC AATTTAGTACTGCTGAGTGATTGATTCCCATTCGTTGTGGCGGGAGGTGC GGAGTACTACATGTGTGAATCTGCCTGCACAATCAGTGCTGCTGCTATCG CCTGCGAAATCATCTTGCGCAGAAAATCAAATATTTACAGACAAACTGTA CATCCCGCTCTGTAATTGTTCTGTTTTGTACATTCACTCGAGACGTCAGA TTCACCCACACAAAGTCGGACATGCCGTCCGGCTTCAGTATGAAGCTTCG CAAGCATATCCGCACAAAGCGTTTGGAGGACGTGCGGCAGGTGGGTATGG ACCGTGTCGTGGACTTCAAGTTCGGGAGCGGAGAGACAGCTAATCATATC ATCCTCGAGCTCTACGCACAAGGTATCGACTGCTGCTTGGAACCCCAGGA CGTGCACGGACACAGGGGGCAGAGGGCGGGAGGGTGTGGAAAATGACTCA CAGTAAGAAGTAGAGGAATGTGCATTGGAAAGCATGACAAAAACTCTCAA ACAAACCGGAGGTTTGCTCAGTGTTTTCAATACTGCTGGATCAGTTATCC ACAACCCGACCAAACCAGGGAGGGAGGGTGTTGGATTCCCTGCCTAAATC TAATGCTTGAGCGGGATCGTACGTTGTTTTTCTACTGTGACGGAAGTACT CAGATCTTTAACGCAAGAATGACGACTGTCACCAATATATGCGAAGAGTT TTGTACGGTCAAGAGGGAGCGCCGCTGCACTCAGCAAATATACCCTTCCG TCTGTCGCCAAGATCTTCCCCTGTGACACCTCTCTCCCTCCCCCCTCCTT CCCTCCCCTTAAAATCGCCGATCGCTCCATCAGGCAATTTAATTTTGACG GATCATAAGTACGAGATCCTTGACCTCCTCCGGACGCACACATACGACGG TCAGCGCGACGAGGGCGACGTCCGAGTTGCAGTACGCCAGATCTACCCGA TGGATCTCGCGACAACCCAAGAGGGGACGCCGACTGCGTCCGTCGTGACC GCTCTTTCGACGGCAGCAGAGGGCGTTGGCGGGGAGAAAAATGAAGGAGC GGCGGCGGCGGCGGCGGTGGTGGTATCGGAAATGTCGATGGACGCAGAAG TCGCGTTTTCGAACGGTATGCCGACAGAAGTGGCGATGCAACGGATGGGA GACTGGTTGCAACGAGCAGCTGTGTTGGCGGCAGAACCACCCCCTGCCCC AGCAACGGAAGTCGAAGCAGCCGATGGCGGCAGCGGTGGCAATCGAAAGA AAGGAAAAGGCGGTGGTGGATCACGGAAGGCAAAGAAGGCGACTCTAAAA CAGGCACTGATGCAGAAGGGATCCGGTGTATCGGTGTACGGCCCGTCCGT GCTCGAGCACTGTGTGTTGGGGGCCGGCCTGCGGCCTAACGCCAAGCTAT CTGCCGTTGGCGCTCTTTCCGCTGCTACTCCTGCTGCTGTCAGTGGCACT TCTAGTGGAGACACTAGCACTGCCATCCCCGCCGCCAACACCACCGCCGC CGAGGATTCTCATGCCAAAGCACTGGTGGCAGAGCCGTGCTGTCGTCGCG GAGGCTTTTCGGAAGACGAGATCCGAAGACTTGTTATCGCGCTTGCCGGT GCTGACGCCACTGTCCAGCAGCTCGATCGTCCCGGGCAACAGGGATATAT CCTGTGCAAGCCGCTGGGGGGGAAGGGGGCTGCCAGTGCCGCTACCGCCG GCGGGGACGGCGGGGTGGCCCACGGGGCAAGAGCAGATTTCGGTGGAGAT GGAAAAGAGGACATGCCCAAGCAGGGGGAGGGCGGCAAGCAGAAAGCGGT G
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Coding sequence (CDS) from alignment at H-paniculata_contig236:5196..8896-

>mRNA_H-paniculata_contig236.6374.1 ID=mRNA_H-paniculata_contig236.6374.1|Name=mRNA_H-paniculata_contig236.6374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2664bp|location=Sequence derived from alignment at H-paniculata_contig236:5196..8896- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAAAACACGATTTACGGCTGCAGATGTTAGGGCTATGGTCAGGGA
CTTGAGGGCGTCCGTGCATGGCCTACGCGTAGTAAACGTGTACGACCTCG
ACTCAAAGATGACGAAAACACGATTTACGGCTGCAGATGTTAGGGCTATG
GTCAGGGACTTGAGGGCGTCCGTGCATGGCCTACGCGTAGTAAACGTGTA
CGACCTCGACTCAAAGACGTACTTGTTCAAGCTGGCCAGTCCGGGGCAGG
AAAAAGCGGTTCTCTTGCTGGAATCCGGGGTCCGCTTTCATACCACTAGA
CGTACTTGTTCAAGCTGGCCAGTCCGGGGCAGGAAAAAGCGGTTCTCTTG
CTGGAATCCGGGGTCCGCTTTCATACCACTAGATTCACCCACACAAAGTC
GGACATGCCGTCCGGCTTCAGTATGAAGCTTCGCAAGCATATCCGCACAA
AGCGTTTGGAGGACGTGCGGCAGGTGGGTATGGACCGTGTCGTGGACTTC
AAGTTCGGGAGCGGAGAGACAGCTAATCATATCATCCTCGAGCTCTACGC
ACAAGATTCACCCACACAAAGTCGGACATGCCGTCCGGCTTCAGTATGAA
GCTTCGCAAGCATATCCGCACAAAGCGTTTGGAGGACGTGCGGCAGGTGG
GTATGGACCGTGTCGTGGACTTCAAGTTCGGGAGCGGAGAGACAGCTAAT
CATATCATCCTCGAGCTCTACGCACAAGGCAATTTAATTTTGACGGATCA
TAAGTACGAGATCCTTGACCTCCTCCGGACGCACACATACGACGGTCAGC
GCGACGAGGGCGACGTCCGAGTTGCAGTACGCCAGATCTACCCGATGGAT
CTCGCGACAACCCAAGAGGGGACGCCGACTGCGTCCGTCGTGACCGCTCT
TTCGACGGCAGCAGAGGGCGTTGGCGGGGAGAAAAATGAAGGAGCGGCGG
CGGCGGCGGCGGTGGTGGTATCGGAAATGTCGATGGACGCAGAAGTCGCG
TTTTCGAACGGTATGCCGACAGAAGTGGCGATGCAACGGATGGGAGACTG
GTTGCAACGAGCAGCTGTGTTGGCGGCAGAACCACCCCCTGCCCCAGCAA
CGGAAGTCGAAGCAGCCGATGGCGGCAGCGGTGGCAATCGAAAGAAAGGA
AAAGGCGGTGGTGGATCACGGAAGGCAAAGAAGGCGACTCTAAAACAGGC
ACTGATGCAGAAGGGATCCGGTGTATCGGTGTACGGCCCGTCCGTGCTCG
AGCACTGTGTGTTGGGGGCCGGCCTGCGGCCTAACGCCAAGCTATCTGCC
GTTGGCGCTCTTTCCGCTGCTACTCCTGCTGCTGTCAGTGGCACTTCTAG
TGGAGACACTAGCACTGCCATCCCCGCCGCCAACACCACCGCCGCCGAGG
ATTCTCATGCCAAAGCACTGGTGGCAGAGCCGTGCTGTCGTCGCGGAGGC
TTTTCGGAAGACGAGATCCGAAGACTTGTTATCGCGCTTGCCGGTGCTGA
CGCCACTGTCCAGCAGCTCGATCGTCCCGGGCAACAGGGATATATCCTGT
GCAAGCCGCTGGGGGGGAAGGGGGCTGCCAGTGCCGCTACCGCCGGCGGG
GACGGCGGGGTGGCCCACGGGGCAAGAGCAGATTTCGGTGGAGATGGAAA
AGAGGACATGCCCAAGCAGGGGGAGGGCGGCAAGCAGAAAGCGGTGGCAA
TTTAATTTTGACGGATCATAAGTACGAGATCCTTGACCTCCTCCGGACGC
ACACATACGACGGTCAGCGCGACGAGGGCGACGTCCGAGTTGCAGTACGC
CAGATCTACCCGATGGATCTCGCGACAACCCAAGAGGGGACGCCGACTGC
GTCCGTCGTGACCGCTCTTTCGACGGCAGCAGAGGGCGTTGGCGGGGAGA
AAAATGAAGGAGCGGCGGCGGCGGCGGCGGTGGTGGTATCGGAAATGTCG
ATGGACGCAGAAGTCGCGTTTTCGAACGGTATGCCGACAGAAGTGGCGAT
GCAACGGATGGGAGACTGGTTGCAACGAGCAGCTGTGTTGGCGGCAGAAC
CACCCCCTGCCCCAGCAACGGAAGTCGAAGCAGCCGATGGCGGCAGCGGT
GGCAATCGAAAGAAAGGAAAAGGCGGTGGTGGATCACGGAAGGCAAAGAA
GGCGACTCTAAAACAGGCACTGATGCAGAAGGGATCCGGTGTATCGGTGT
ACGGCCCGTCCGTGCTCGAGCACTGTGTGTTGGGGGCCGGCCTGCGGCCT
AACGCCAAGCTATCTGCCGTTGGCGCTCTTTCCGCTGCTACTCCTGCTGC
TGTCAGTGGCACTTCTAGTGGAGACACTAGCACTGCCATCCCCGCCGCCA
ACACCACCGCCGCCGAGGATTCTCATGCCAAAGCACTGGTGGCAGAGCCG
TGCTGTCGTCGCGGAGGCTTTTCGGAAGACGAGATCCGAAGACTTGTTAT
CGCGCTTGCCGGTGCTGACGCCACTGTCCAGCAGCTCGATCGTCCCGGGC
AACAGGGATATATCCTGTGCAAGCCGCTGGGGGGGAAGGGGGCTGCCAGT
GCCGCTACCGCCGGCGGGGACGGCGGGGTGGCCCACGGGGCAAGAGCAGA
TTTCGGTGGAGATGGAAAAGAGGACATGCCCAAGCAGGGGGAGGGCGGCA
AGCAGAAAGCGGTG
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