mRNA_H-paniculata_contig236.6374.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: D8LHP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI) HSP 1 Score: 291 bits (744), Expect = 2.480e-83 Identity = 220/401 (54.86%), Postives = 243/401 (60.60%), Query Frame = 1
Query: 298 VLLLESGVRFHTTRFTHTKSDMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYDGQRD-----------EGD-VRVAVRQIYPMDLATTQEGTPTASVVTALSTAAEGVGGEKNEGA----------AAAAAVVVSEMSMDAEVAFSNGMPTEVAMQRMGDWLQRAAVLAAEPPXXXXXXXXXXXXXXXXXXXXXXXXXXXRKA------------------------KKATLKQALMQKGSGVSVYGPSVLEHCVLGAGLRPNAKLSAVGALSAATPAAVSGTSSGDTSTAIPAANTTAAEDSHAKALVAEPCCR------RGGFSEDEIRRLVIALAGADATVQQLDRPGQQGYILCKPL 1344
+LLLESGVRFHTT+FTHTKSDMPSGFSMKLRKHIRT+RLEDVRQVGMDRVVDFKFGSG+ +NH+ILELYA GN+ILTD KYEILDLLRTH Y+GQ GD VRVAVRQIYPM+LATTQEGT + AA + +A AF NG P EV ++RM +WL+RAA XXXXXXXXXXXXXXXXXXXXXXXXXXX KKATLKQALMQKGSGVSVYGPS++EHCVL AGLRPNAKL TP SG AA C R G SED++R LV+AL GA+A VQQLDRPGQ+GYI CKPL
Sbjct: 1 MLLLESGVRFHTTKFTHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGKASNHVILELYASGNIILTDSKYEILDLLRTHIYEGQGGGAAGGSGATGGAGDNVRVAVRQIYPMELATTQEGTTAVPQLPXXXXXXXXXXXXXXXXXXXXXXXXXRYGRVAAPEDQQREEEAPGAFVNGTPLEVGVRRMSEWLERAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKKATLKQALMQKGSGVSVYGPSIIEHCVLAAGLRPNAKL---------TPDGSSG-------------GVHAAXXXXXXXXXXXXXCSGNGGELRAGLSEDDVRELVVALGGAEAIVQQLDRPGQRGYIQCKPL 379
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: A0A835ZCK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK8_9STRA) HSP 1 Score: 269 bits (688), Expect = 9.660e-76 Identity = 204/438 (46.58%), Postives = 240/438 (54.79%), Query Frame = 1
Query: 154 KTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAVLLLESGVRFHTTRFTHTKSDMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYDGQRDEGDVRVAVRQIYPMDLATTQEGTPTASVVTALSTAAEGVGGEKNEGAAAAAAVVVSEMSMDAEV-------------------------------------AFSNGMPTEVAMQRMGDWLQRAAVLAAEPPXXXXXXXXXXXXXXXXXXXXXXXXXXXRKAKKATLKQALMQKGSGVSVYGPSVLEHCVLGAGLRPNAKLSAVGALSAATPAAVSGTSSGDTSTAIPAANTTAAEDSHAKALVAEPCCRRGGFSEDEIRRLVIALAGADATVQQLDRPGQQGYILCKPLGGKG 1356
K+RF+A DVRAMVRDLRAS GLRV+NVYDLDSKT+L KLA+PG+EKAVLLLESG RFHTTRF+H KSDMPS FSMKLRKHI+ KRLED+RQ+ DRVVDFKFGSG+ A HIILELYA GN+ILTD KYE+L LLRTH+Y D VAVRQIYP+ AT Q+G T + LS+AA K A V ++ + +A+ A G A +A + PXXXXXXXXXXXXXXXXX K TL+Q LM+KGS +SV+GPSV++HCVL AGLRP ++ P VS SE E+ LV AL GA +LDRPGQ+GYIL G KG
Sbjct: 2 KSRFSATDVRAMVRDLRASSLGLRVINVYDLDSKTFLIKLANPGREKAVLLLESGTRFHTTRFSHDKSDMPSAFSMKLRKHIKAKRLEDIRQLAFDRVVDFKFGSGDAACHIILELYASGNIILTDSKYEVLQLLRTHSYGA-----DALVAVRQIYPVAHATAQDGGRTEAEEGPLSSAAALRAWMKEN---MAQIVAEADAAQEAKAXXXXXXXXXXTXXXXXXXXXXXXXXXXXXXXXRSSGQAAKGGKTAXXXXXXXXXXXXXXAAIAGKAPXXXXXXXXXXXXXXXXX-------------SKVTLRQLLMRKGSTLSVHGPSVVDHCVLVAGLRPGLRV----------PPDVS------------------------------------SLSEGEMEGLVAALRGAAGVAAELDRPGQEGYILYTEQGEKG 372
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: A0A6U1AHC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA) HSP 1 Score: 243 bits (621), Expect = 6.630e-67 Identity = 149/312 (47.76%), Postives = 185/312 (59.29%), Query Frame = 1
Query: 148 MTKTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAVLLLESGVRFHTTRFTHTKSDMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYDGQRDEGDVRVAVRQIYPMDLATTQEGTPTASVVTALSTAAEGVGGEKNEGAAAAAAVVVSEMSMDAEVAFSNGMPTEVAMQRMGDWLQRAAVLAAEPPXXXXXXXXXXXXXXXXXXXXXXXXXXXRKAKKATLKQALMQKGSGVSVYGPSVLEHCVLGAGLRPNAKLSA 1083
M K+RF+AADVRA VRDLR V G+R VNVYD+DSKTYLFKLA+PG EK VLLLESGVRFH+T + K+DMPSGFSMKLRKHIR KRLE++ Q+G+DRVVDF+FGSG +HIILE+YA GN+ILTDH Y IL +LR+H +D AV Q+YP+ ATT L+ AA GG + +G + E S D+ F Q AAV A KA+K TLKQ LM +GSG++ YG +++HC+L AGL PN K++A
Sbjct: 1 MVKSRFSAADVRATVRDLRGRVLGMRCVNVYDIDSKTYLFKLANPGTEKVVLLLESGVRFHSTSYARDKADMPSGFSMKLRKHIRAKRLENIAQLGIDRVVDFRFGSGTECHHIILEMYAAGNIILTDHSYSILAVLRSHKFDETAS-----TAVNQLYPIAHATT------------LAAAA---GGGEADGEGGTTGPLTQESSPDSLREFIRA--------------QVAAVSEA--------------------------GTKSNKARKLTLKQVLMTRGSGMAQYGIDIIQHCILTAGLNPNMKMNA 252
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: K8Z908_NANGC (Zinc knuckle (Cchc-type) family protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z908_NANGC) HSP 1 Score: 214 bits (546), Expect = 3.370e-61 Identity = 161/431 (37.35%), Postives = 204/431 (47.33%), Query Frame = 1
Query: 148 MTKTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAVLLLESGVRFHTTRFTHTKS---DMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYD------------------------GQRDEGDVRVAVRQIYPMDLATTQEGTPTASVVTALSTAAEGVGGEKNEGAAAAAAVVVSEMSMDAEVAFSNGMPTEVAMQRMGDWLQRAAVLAAEPPXXXXXXXXXXXXXXXXXXXXXXXXXXXRKAKKATLKQALM-QKGSGVSVYGPSVLEHCVLGAGLRPNAKLSAVGALSAATPAAVSGTSSGDTSTAIPAANTTAAEDSHAKALVAEPCCRRGGFSEDEIRRLVIALAGADATVQQLDRPGQQGYILCKPLGGKG 1356
M KT+FT DVRAMVRDLR V GL+VVN+YD+D++TY FKLA PG EK LLLESG RFHTT + +S ++P+ F+MKLRK++R K LEDVRQ+GMDRVV F+FG GE A H+ILELYA GNL+LTD Y IL LLRTH YD G+ +E V V +YP+ A+ AL+ G EK+ GA D + T +A L+ V K LK ALM K +S GP+++EH VL AGLRP +L PA+ ED E +R G +E+E RL A+ G D +++LD PGQ+GYILC+ G G
Sbjct: 1 MVKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDIDNRTYTFKLAVPGGEKVTLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYDQGPEKAVDGEVVGKDAEAGAGTVEGRVEESGRVVRVGHVYPLAFASN-----------ALAATRSSAGVEKDAGA-----------KQDPPPWLAVTAETVLAA------LREVVVREKGKAGKEGNGTSSMAQGGKRGRTKRGGQAGASARSKVNLKMALMTSKTLDLSALGPAIVEHAVLEAGLRPLLRLMP------------------------PASAVALGEDEE------EGEGQREGLTEEEAARLAEAVQGLDGRLRRLDLPGQEGYILCRKADGAG 373
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: A0A4D9CTN6_9STRA (NFACT-R_1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTN6_9STRA) HSP 1 Score: 213 bits (541), Expect = 1.570e-56 Identity = 162/430 (37.67%), Postives = 209/430 (48.60%), Query Frame = 1
Query: 148 MTKTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAVLLLESGVRFHTTRFTHTKS---DMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYD------------------------GQRDEGDVRVAVRQIYPMDLATTQEGTPTASVVTALSTAAEGVGGEKNEGAAAAAAVVVSEMSMDAEVAFSNGMPTEVAMQRMGDWLQRAAVLAAEPPXXXXXXXXXXXXXXXXXXXXXXXXXXXRKAK-KATLKQALM-QKGSGVSVYGPSVLEHCVLGAGLRPNAKLSAVGALSAATPAAVSGTSSGDTSTAIPAANTTAAEDSHAKALVAEPCCRRGGFSEDEIRRLVIALAGADATVQQLDRPGQQGYILCKPLGG 1350
M KT+FT DVRAMVRDLR V GL+V+N+YD+D++TY FKLA PG EK LLLESG RFHTT + +S ++PS F+MKLRK++R K LEDVRQ+GMDRVV F+FG GE A H+ILELYA GNL+LTD Y IL LLRTH Y+ G+ +E V V +YP+ A+ AL+ EK+ GA ++D + T +A R V+ E A+ K LK ALM K +S GP+++EH VL AGLRP +L A+T A V G G+ RR G +E+E RL A+ G D +++LD PGQ+GYILC+ G
Sbjct: 1 MVKTKFTTPDVRAMVRDLRTRVLGLKVINIYDIDNRTYTFKLAVPGGEKVTLLLESGARFHTTAYARERSVPGELPSVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYEQGPDKAVDGEVVGNDAEAGPGMGEGRVEESGRVVRVGHVYPLAFASN-----------ALAATRSSAAVEKDAGA-----------NLDPPPWLAVTAETVLAALR-------EVVVREEGKAGKEGNGTSSMAQGAKRGRTKRGGQAGASARSKVNLKMALMTSKTLDLSGLGPAIVEHAVLEAGLRPLLRLMPP----ASTVALVEGGEEGEG--------------------------RREGLTEEEAARLAEAVQGLDGRLKRLDLPGQEGYILCRKADG 371
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: A0A7S1UGR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGR3_9STRA) HSP 1 Score: 192 bits (488), Expect = 1.130e-55 Identity = 100/166 (60.24%), Postives = 124/166 (74.70%), Query Frame = 1
Query: 148 MTKTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAVLLLESGVRFHTTRFTHTKSDMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYDGQRDEGDVRVAVRQIYPMDLATT 645
M + RF A+DVRAMVRDLR+ + G+RV N+YD+++KTYL KLA PG+++ VLLLESG RFH+TRF KS MPSGF+MKLRKH+RTKRLED+RQ+G DRVV F FG GE+ N +ILELYAQGN++LT + IL LLR H Y G V +YP+ ATT
Sbjct: 1 MVRQRFDASDVRAMVRDLRSRLLGMRVSNIYDVNAKTYLLKLAEPGRDREVLLLESGSRFHSTRFELDKSAMPSGFAMKLRKHLRTKRLEDLRQLGTDRVVVFTFGIGESTNCLILELYAQGNIVLTAPDFTILALLRVHDYAG-----GAAARVGSVYPLAAATT 161
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: W7T3P9_9STRA (Fibronectin-binding A protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T3P9_9STRA) HSP 1 Score: 188 bits (477), Expect = 9.940e-54 Identity = 96/146 (65.75%), Postives = 114/146 (78.08%), Query Frame = 1
Query: 148 MTKTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAVLLLESGVRFHTTRFTHTKS---DMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYD 576
M KT+FT DVRAMVRDLR V GL+VVN+YD+D++TY FKLA PG EK LLLESG RFHTT + +S ++P+ F+MKLRK++R K LEDVRQ+GMDRVV F+FG GE A H+ILELYA GNL+LTD Y IL LLRTH YD
Sbjct: 1 MVKTKFTTPDVRAMVRDLRTKVLGLKVVNIYDIDNRTYTFKLAVPGGEKVTLLLESGARFHTTAYARERSVPGELPNVFAMKLRKYLRGKGLEDVRQLGMDRVVVFRFGQGEGALHLILELYASGNLVLTDANYLILALLRTHQYD 146
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: A0A7S3J190_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3J190_9SPIT) HSP 1 Score: 181 bits (459), Expect = 4.250e-50 Identity = 91/158 (57.59%), Postives = 113/158 (71.52%), Query Frame = 1
Query: 154 KTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAVLLLESGVRFHTTRFTHTKSDMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYDGQRDEGDVRVAVRQIYP 627
K R TA D+RA+V L+ + LRV N+YD+ +K YLFKLA+ G K LL+E+G+R HTT F K+ +PSGFSMKLRKH+RTKR+ED+RQVG+DRVVD G GE A HI++E YA GNLILTD Y I+ LLRTH YD D R AV ++YP
Sbjct: 6 KQRLTAIDIRALVMTLKRKIMSLRVANIYDISNKLYLFKLAAKGN-KEFLLIEAGIRMHTTGFVKNKNGIPSGFSMKLRKHLRTKRVEDIRQVGIDRVVDITLGQGEAAYHILIEFYASGNLILTDANYTIISLLRTHRYDE-----DTRCAVGEVYP 157
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: A0A3B3QMW2_9TELE (Uncharacterized protein n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QMW2_9TELE) HSP 1 Score: 178 bits (451), Expect = 8.630e-50 Identity = 85/162 (52.47%), Postives = 124/162 (76.54%), Query Frame = 1
Query: 154 KTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAVLLLESGVRFHTTRFTHTKSDMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYDGQRDEGDVRVAVRQIYPMDLA 639
KTRF D+RA++ ++ A+ G+RV NVYD+D+KTYL +L P + KAVLLLESG+R H+T + K+ MPSGF+MK RKH++++RL V+Q+G+DR+VD +FGS E A H+I+ELY +GN++LTDH+Y IL+LLR T + + DV++AVR+ YP++ A
Sbjct: 2 KTRFNTVDIRAVIAEINATFIGMRVYNVYDIDNKTYLIRLQKP-ESKAVLLLESGIRIHSTEYDWPKNLMPSGFAMKCRKHLKSRRLVSVKQLGIDRIVDMQFGSDEAAYHLIVELYDRGNIVLTDHEYTILNLLRVRTAEAE----DVKIAVRERYPLESA 158
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Match: A0A8D0G7Y4_SPHPU (Nuclear export mediator factor n=2 Tax=Sauria TaxID=32561 RepID=A0A8D0G7Y4_SPHPU) HSP 1 Score: 177 bits (450), Expect = 1.250e-49 Identity = 92/181 (50.83%), Postives = 133/181 (73.48%), Query Frame = 1
Query: 154 KTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAVLLLESGVRFHTTRFTHTKSDMPSGFSMKLRKHIRTKRLEDVRQVGMDRVVDFKFGSGETANHIILELYAQGNLILTDHKYEILDLLRTHTYDGQRDEGDVRVAVRQIYPMDLATTQEGTPTASVVTALSTAA 696
K+RF+ D+RA++ +LR+S+ G+RV NVYD+D+KTYL +L P KA LLLESG+R HTT F K+ MPSGF+MK RKH++++RL +V+Q+G+DR+VDF+FGS E A H+I+ELY +GN++LTD++Y IL++LR T + DV+ AVR+ YP+D A PT +T + +AA
Sbjct: 2 KSRFSTVDIRAVIAELRSSLLGMRVNNVYDVDNKTYLIRLQKPDC-KATLLLESGIRIHTTEFEWPKNMMPSGFAMKCRKHLKSRRLVNVKQLGIDRIVDFQFGSDEAAYHLIIELYDRGNIVLTDYEYLILNILRFRTDEAD----DVKFAVRERYPVDNAKASAPLPTLERLTEIISAA 177 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig236.6374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig236.6374.1 >prot_H-paniculata_contig236.6374.1 ID=prot_H-paniculata_contig236.6374.1|Name=mRNA_H-paniculata_contig236.6374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=444bp MTKTRFTAADVRAMVRDLRASVHGLRVVNVYDLDSKTYLFKLASPGQEKAback to top mRNA from alignment at H-paniculata_contig236:5196..8896- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig236.6374.1 ID=mRNA_H-paniculata_contig236.6374.1|Name=mRNA_H-paniculata_contig236.6374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3701bp|location=Sequence derived from alignment at H-paniculata_contig236:5196..8896- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig236:5196..8896- >mRNA_H-paniculata_contig236.6374.1 ID=mRNA_H-paniculata_contig236.6374.1|Name=mRNA_H-paniculata_contig236.6374.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2664bp|location=Sequence derived from alignment at H-paniculata_contig236:5196..8896- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |