mRNA_H-paniculata_contig2359.6370.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2359.6370.1
Unique NamemRNA_H-paniculata_contig2359.6370.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2359.6370.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI)

HSP 1 Score: 269 bits (688), Expect = 2.230e-75
Identity = 145/249 (58.23%), Postives = 183/249 (73.49%), Query Frame = 3 
Query:    3 KKGSEWDGIRIRHRYGVTA--YHNRIEVLMKRKAEEVNKQNLSAKSRDEVEEMLLNATRLFKEKALLAQTLKENIAILLEENRQRVSKWKGMKRYIERRTTMLFNQYLQKKGSAGEVRFNDEEKKLGLTYQKSNTDETSQCNDVKQLSGGERSFATLALLLALGSQHECPFRVMDEFDVFMDAMSRNIAIKSVIEFAAEFDKRQFIFITPQDLSSVQANTSIKIHKMLPPQKGDHNQSTLEEAFANNNS 743
            K G EWDG+R+  R G+T     ++++V  KR  +E  K+   +K+++EVE  LL A  LFKEK  LA TL+ N+ +L  E  QR  +W+ M+ ++ R+T+ LF+ YLQ+KG++GEVRF++E + LGLTYQK ++D  SQC+DVK LSGGERSFATLALLLALG  HECPFRVMDEFDVFMDAMSRNIAIK VIEFA     RQFI ITPQDLSSV A+ + KI KM PP+KGDHNQ+TLEE      +
Sbjct: 1019 KDGLEWDGVRVESR-GLTVEQLEHKVQVSRKRYEKEREKRCKRSKTKEEVESQLLQAYNLFKEKEKLADTLEGNMEMLSNERNQRTRRWRQMRDFVARQTSRLFDAYLQEKGASGEVRFDNECQTLGLTYQKDSSDNASQCSDVKLLSGGERSFATLALLLALGQSHECPFRVMDEFDVFMDAMSRNIAIKQVIEFAKRDSSRQFILITPQDLSSVTASDACKIIKMQPPRKGDHNQTTLEETLGGGGA 1266
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BLAST of mRNA_H-paniculata_contig2359.6370.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 7.350e-49
Identity = 110/244 (45.08%), Postives = 157/244 (64.34%), Query Frame = 3 
Query:   18 WDGIRIRH--RYGVTAYHNRIEVLMKRKAEEVNKQNLSAKSRDEVEEMLLNATRLFKEKALLAQTLKENIAILLEENRQRVSKWKGMKRYIERRTTMLFNQYLQKKGSAGEVRFNDEEKKLGLTYQKSNTDETSQCNDVKQLSGGERSFATLALLLALGSQHECPFRVMDEFDVFMDAMSRNIAIKSVIEFAAEFDKRQFIFITPQDLSSVQANTSIKIHKMLPPQKGDHNQSTLEEAFANNNS 743
            WDG R     +  V A   +++   +R   +  K N+  +++  V E L+       +       L  N+ +L +E  +R  KWK  +  I   T  +F   L +K + GEV+FN ++K LGL+YQ    ++TS+C DV+QLSGGE+S+ATLALLL+LG+ H+CPFRVMDEFDVFMDA+SR+ AI  V++FA     +QFIFITPQDLSSV ++ + KI KM PP+KGDHNQ+TL E+F +++S
Sbjct:  924 WDGRRADDPGKRTVEALRAKLKQAEERYFNDPIKINMGNRTKAMVVEELIQEESTRGDMGWAINKLDSNMKMLSDERLKRREKWKTFRDVIPTWTARMFGDILAEKEAHGEVKFNHKKKTLGLSYQSQAHNDTSKCRDVRQLSGGEKSYATLALLLSLGAHHDCPFRVMDEFDVFMDAVSRDHAILEVLKFAKRNKDKQFIFITPQDLSSVTSSDTCKIIKMQPPRKGDHNQTTLTESFGSSSS 1167
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BLAST of mRNA_H-paniculata_contig2359.6370.1 vs. uniprot
Match: F0YEV6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEV6_AURAN)

HSP 1 Score: 172 bits (435), Expect = 4.300e-47
Identity = 90/168 (53.57%), Postives = 124/168 (73.81%), Query Frame = 3 
Query:  228 LLEENRQRVSKWKGMKRYIERRTTMLFNQYLQKKGSAGEVRFNDEEKKLGLTYQKSNTDETSQCNDVKQLSGGERSFATLALLLALGSQHECPFRVMDEFDVFMDAMSRNIAIKSVIEFAAEFDKRQFIFITPQDLSSVQANTSIKIHKMLPPQKGDHNQSTLEEAFA 731
            L ++  +R ++ K +++YI RR+   F+  LQ KGSAG++ F  +EK LGLTYQK N D+ +  N++  LSGGERSF+TLA+L++LG+  ECPFRVMDEFDVFMD +SR +A+K +++ A + + RQFIFITPQDLSS+  +  +KI KM PP +G   Q TLEEAFA
Sbjct:   25 LKQDAHERWNRLKRIRQYICRRSNREFDNILQAKGSAGKLDFEHKEKTLGLTYQKDNADDANIINNITSLSGGERSFSTLAMLISLGATIECPFRVMDEFDVFMDQVSRKVAMKELVDMAKKMENRQFIFITPQDLSSLPQSDILKIFKMNPPIRG---QRTLEEAFA 189
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BLAST of mRNA_H-paniculata_contig2359.6370.1 vs. uniprot
Match: A0A7S2W981_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W981_9STRA)

HSP 1 Score: 167 bits (423), Expect = 5.730e-44
Identity = 102/223 (45.74%), Postives = 135/223 (60.54%), Query Frame = 3 
Query:   60 YHNRIEVLMKRKAEEVNKQNLSAKSRDEVEEMLLNATRLFKEKALLAQTLKENIAILLEENRQRVSKWKGMKRYIERRTTMLFNQYLQKKGSAGEVRFNDEEKKLGLTYQKSNTDET-SQCNDVKQLSGGERSFATLALLLALGSQHECPFRVMDEFDVFMDAMSRNIAIKSVIEFAAEFDKRQFIFITPQDLSSVQANTSIKIHKMLPPQKG--DHNQSTLE 719
            Y  R+E  +K   EE +K+NLS K  +   +    A      K    +T++ NI +++ + +QR   W+  + +I   T   F+Q L KKGS+GE+ F+   K L LT QK NTD   SQ  DVK LSGGERSF TL+LLLALG   E PFRVMDEFDVF+D MSR IA++++I  A +   RQFIFITPQDLS++Q +  +KI  M  P +      Q TLE
Sbjct:   78 YKRRLESTVKEIEEEKSKKNLSEKDPEVALQKFQRAKTDLDAKYHQIETVQVNIDLMIADVKQRQRTWRKFRSHIANMTNETFDQMLNKKGSSGEIAFDHSAKTLNLTVQKDNTDRNMSQTKDVKALSGGERSFVTLSLLLALGENLETPFRVMDEFDVFLDPMSRKIALETMIHVAKDLGHRQFIFITPQDLSNLQTDPMLKIFCMKNPDRNLQGPTQQTLE 300
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BLAST of mRNA_H-paniculata_contig2359.6370.1 vs. uniprot
Match: A0A7S3UWL6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL6_HETAK)

HSP 1 Score: 162 bits (410), Expect = 8.190e-43
Identity = 96/222 (43.24%), Postives = 140/222 (63.06%), Query Frame = 3 
Query:   72 IEVLMKRKAEEVNK----QNLSAKSRDEVEEMLLNATRLFKEKALLAQTLKENIAILLEENRQRVSKWKGMKRYIERRTTMLFNQYLQKKGSAGEVRFNDEEKKLGLTYQKSNTDETSQCNDVKQLSGGERSFATLALLLALGSQHECPFRVMDEFDVFMDAMSRNIAIKSVIEFA-AEF-DKRQFIFITPQDLSSVQANTS-----IKIHKMLPPQKGDHN 704
            IE L++R+ E++ +    Q L  KS+ E E   L A   +++K    +T   N   L ++  +R+ K+K   ++  R T  +F++YLQ++GS+G + FN  EK L +  QK N DE +Q  D+K LSGGERS  TLALLLALG+  ECPFRVMDEFD+FMDAM+R +A++ VIE   A+F + RQ I ITPQ+L  V+ +       I I ++LPP++ + N
Sbjct:   21 IEKLIRRRTEQLKQKREQQALQRKSKQECETQYLRAKAKYRDKEDELKTKWTNAMALQKDIAERMDKYKAFSKFFRRSTNHMFDEYLQQRGSSGGIHFNSNEKTLQIVVQKDNMDEATQTTDIKALSGGERSATTLALLLALGANIECPFRVMDEFDIFMDAMARKLAMQQVIEHGMADFMENRQMILITPQNLKDVEDHPKFREGLISIQRLLPPERLNSN 242
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BLAST of mRNA_H-paniculata_contig2359.6370.1 vs. uniprot
Match: A0A7R9VE37_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VE37_9STRA)

HSP 1 Score: 157 bits (398), Expect = 5.870e-42
Identity = 80/161 (49.69%), Postives = 112/161 (69.57%), Query Frame = 3 
Query:  210 KENIAILLEENRQRVSKWKGMKRYIERRTTMLFNQYLQKKGSAGEVRFNDEEKKLGLTYQKSNTDETSQCNDVKQLSGGERSFATLALLLALGSQHECPFRVMDEFDVFMDAMSRNIAIKSVIEFAAEFDKRQFIFITPQDLSSVQANTSIKIHKMLPPQK 692
            K+N+  ++ ++R R  +W+  + Y+   T + F+Q L KKGSAG++ F+ E + L L  QK N++E SQ  DVK LSGGERSF TLALLLALG   E PFRVMDEFDVF+D ++R IA+ +++  A   + RQFIFITPQDLS++  +  +KI +M PP +
Sbjct:    1 KQNVDAMIADSRSRRKRWREFRGYLVETTNISFDQMLNKKGSAGQLDFDHENQTLNLIVQKDNSNEMSQTKDVKALSGGERSFTTLALLLALGESLETPFRVMDEFDVFLDPVARKIALDNMVSAAKSLEHRQFIFITPQDLSNLTTDPMLKIIRMKPPAR 161
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BLAST of mRNA_H-paniculata_contig2359.6370.1 vs. uniprot
Match: A0A7S1W016_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1W016_9STRA)

HSP 1 Score: 171 bits (434), Expect = 7.060e-42
Identity = 96/223 (43.05%), Postives = 143/223 (64.13%), Query Frame = 3 
Query:   60 YHNRIEVLMKRKAEEVNKQNLSAKSRDEVEEMLLNATRLFKEKALLAQTLKENIAILLEENRQRVSKWKGMKRYIERRTTMLFNQYLQKKGSAGEVRFNDEEKKLGLTYQKSNTDETSQCNDVKQLSGGERSFATLALLLALGSQHECPFRVMDEFDVFMDAMSRNIAIKSVIEFAAEFDKRQFIFITPQDLSSVQANTSIKIHKMLPPQK---GDHNQSTLE 719
            Y  RIE  +K+   E  ++ +S +      E    A +    K +  +T+++N+  L+ + ++R  +WK  + +I   T + F++ L KKGS+G++ F  E+++L L  QK NT+E SQ  DVK LSGGERSF TL+LLLALG   E PFRVMDEFDVF+D +SR IA+ +++  A E + RQFIFITPQDLSS++ +  +KI K+ PP++   G  +Q TL+
Sbjct:  828 YKARIERAVKQIERERERRQMSERDPVVALEKFQRAKKSLDAKLIQIETIEKNVNALISDIKERKKRWKLFRAHIAFTTNITFDEMLNKKGSSGQIEFLHEDRRLKLVVQKDNTNEMSQTKDVKALSGGERSFTTLSLLLALGESLETPFRVMDEFDVFLDPVSRKIALDTMVAVAKELEHRQFIFITPQDLSSLKPDRMLKIFKLKPPERNSIGGPSQQTLD 1050
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BLAST of mRNA_H-paniculata_contig2359.6370.1 vs. uniprot
Match: A0A7S2C434_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C434_9STRA)

HSP 1 Score: 155 bits (392), Expect = 4.720e-41
Identity = 85/177 (48.02%), Postives = 119/177 (67.23%), Query Frame = 3 
Query:  201 QTLKENIAILLEENRQRVSKWKGMKRYIERRTTMLFNQYLQKKGSAGEVRFNDEEKKLGLTYQKSNTDETSQCNDVKQLSGGERSFATLALLLALGSQHECPFRVMDEFDVFMDAMSRNIAIKSVIEFAAEFDKRQFIFITPQDLSSVQANTSIKIHKMLPPQKGDHNQSTLEEAFA 731
            +T+++N   L  +   R  KW+ +++ +   T   F+Q L  KG +G+V F+ ++K L +  QK N D  SQ  D K LSGGERS+ TL+LL++LG   ECPFRVMDEFDVFMDA+SR  A++++IE   ++  RQFIFITPQD+SSV  +  +KIH+M PP + +  Q TLEEA A
Sbjct:    3 KTVQKNCEDLKVDLNARGKKWQKLRKTVANLTNSKFDQTLNAKGHSGQVVFDYDKKTLSVVVQKDNRDSQSQITDPKLLSGGERSYVTLSLLISLGECIECPFRVMDEFDVFMDAVSRKKALETLIETGKKYAHRQFIFITPQDISSVTPSPMVKIHRMRPPGRLN-GQQTLEEAMA 178
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BLAST of mRNA_H-paniculata_contig2359.6370.1 vs. uniprot
Match: A0A7S2KV92_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KV92_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.220e-39
Identity = 90/229 (39.30%), Postives = 140/229 (61.14%), Query Frame = 3 
Query:   42 RYGVTAYHNRIEVLMKRKAEEVNKQNLSAKSRDEVEEMLLNATRLFKEKALLAQTLKENIAILLEENRQRVSKWKGMKRYIERRTTMLFNQYLQKKGSAGEVRFNDEEKKLGLTYQKSNTDETSQCNDVKQLSGGERSFATLALLLALGSQHECPFRVMDEFDVFMDAMSRNIAIKSVIEFAAEFDKRQFIFITPQDLSSVQANTSIKIHKMLPPQK----GDHNQSTL 716
            +Y      +RI    K+   E  ++NLS        +  L A +    K    + +++N+ +L+ + ++R  +W   + +I + T + F+++LQKK SAG V F+ + ++L + +QK NTDE++Q NDVK LSGGERSF TL+LLLA+G   E PFRVMDEFDVF+D ++R  A++++IE +   + RQFIFITPQDLS +  +  +KI  +  P++    G   Q TL
Sbjct:  401 KYDSKKCQSRIANREKKIENEKKRRNLSEADPVVARDKYLRAKKDLDSKMEQIEAIEQNVKMLIADVKERKRRWIDFRSHIAQMTNLSFDEFLQKKNSAGRVEFDHDNQQLNIIFQKDNTDESTQTNDVKALSGGERSFTTLSLLLAIGESLETPFRVMDEFDVFLDPVARKRALQTLIEVSKNMEHRQFIFITPQDLSQIPTDNKLKIFHLKAPERSNRVGGPQQQTL 629
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BLAST of mRNA_H-paniculata_contig2359.6370.1 vs. uniprot
Match: A0A7S4NJE4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NJE4_9STRA)

HSP 1 Score: 164 bits (414), Expect = 3.090e-39
Identity = 93/222 (41.89%), Postives = 138/222 (62.16%), Query Frame = 3 
Query:   54 TAYHNRIEVLMKRKAEEVNKQNLSAKSRDEVEEMLLNATRLFKEKALLAQTLKENIAILLEENRQRVSKWKGMKRYIERRTTMLFNQYLQKKGSAGEVRFNDEEKKLGLTYQKSNTDETSQCNDVKQLSGGERSFATLALLLALGSQHECPFRVMDEFDVFMDAMSRNIAIKSVIEFAAEFDKRQFIFITPQDLSSVQANTSIKIHKMLPP-QKGDHNQSTL 716
            +A+  +IE   K    E  K+ L+ K  + V +    A +   +K    +T+  N+  +++++R R  +W   + ++   T   F+Q L KKGS+G++ FN ++  L L  QK NT+E SQ  DVK LSGGERSF TLALLLALG   E PFRVMDEFDVF+D ++R IA+ +++  A   + RQFIFITPQDLS+++ +  +KI +M PP ++   +Q TL
Sbjct: 1077 SAFKAKIERAQKSIEREKEKRQLTRKDPEVVLQQYRRAKKDLDDKVEQIETIGSNVEAMIKDSRGRRKRWMEFRAHLVETTNNSFDQMLNKKGSSGQLEFNHDDHSLNLIVQKDNTNEMSQTKDVKALSGGERSFTTLALLLALGESLETPFRVMDEFDVFLDPVARKIALDNMVTAAKSLEHRQFIFITPQDLSNLKTDPMLKIIRMKPPARQSSASQQTL 1298
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2359.6370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4M2_ECTSI2.230e-7558.23Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
D7G4M1_ECTSI7.350e-4945.08Smc-like protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
F0YEV6_AURAN4.300e-4753.57Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2W981_9STRA5.730e-4445.74Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S3UWL6_HETAK8.190e-4343.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9VE37_9STRA5.870e-4249.69Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1W016_9STRA7.060e-4243.05Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2C434_9STRA4.720e-4148.02Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2KV92_9STRA2.220e-3939.30Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S4NJE4_9STRA3.090e-3941.89Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2359contigH-paniculata_contig2359:12911..19789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score254.2
Seed ortholog evalue5.5e-65
Seed eggNOG ortholog2880.D7G4M2
Preferred nameSMC6
KEGG koko:K12614,ko:K15014
KEGG TC2.A.57.1
KEGG Pathwayko03018,map03018
KEGG ModuleM00395
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000793,GO:0000794,GO:0000803,GO:0001674,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007568,GO:0007569,GO:0008094,GO:0008150,GO:0008152,GO:0009410,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0014074,GO:0016043,GO:0016462,GO:0016604,GO:0016605,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019899,GO:0022402,GO:0030915,GO:0031000,GO:0031625,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032991,GO:0033554,GO:0033676,GO:0034641,GO:0035061,GO:0035861,GO:0036270,GO:0042221,GO:0042493,GO:0042585,GO:0042592,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044260,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051304,GO:0051640,GO:0051641,GO:0051716,GO:0051983,GO:0051984,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071139,GO:0071704,GO:0071840,GO:0090304,GO:0090398,GO:0090734,GO:0097159,GO:0097240,GO:0098687,GO:0106068,GO:1901360,GO:1901363,GO:1901698,GO:1902494,GO:1990234,GO:1990683
EggNOG free text desc.double-strand break repair via homologous recombination
EggNOG OGsCOG1196@1,KOG0250@2759
EC3.6.4.13
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03019,ko03036
Exons7
Model size1614
Cds size663
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929670.3776145-UTR-H-paniculata_contig2359:12910..129811622929670.3776145-UTR-H-paniculata_contig2359:12910..12981Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2359 12911..12981 +
1691480960.1204898-UTR-H-paniculata_contig2359:12910..129811691480960.1204898-UTR-H-paniculata_contig2359:12910..12981Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2359 12911..12981 +
1622929670.396644-UTR-H-paniculata_contig2359:13995..140071622929670.396644-UTR-H-paniculata_contig2359:13995..14007Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2359 13996..14007 +
1691480960.1330264-UTR-H-paniculata_contig2359:13995..140071691480960.1330264-UTR-H-paniculata_contig2359:13995..14007Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2359 13996..14007 +
1622929670.5436819-UTR-H-paniculata_contig2359:18921..197891622929670.5436819-UTR-H-paniculata_contig2359:18921..19789Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2359 18922..19789 +
1691480960.1961653-UTR-H-paniculata_contig2359:18921..197891691480960.1961653-UTR-H-paniculata_contig2359:18921..19789Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2359 18922..19789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929670.4164183-CDS-H-paniculata_contig2359:14007..140671622929670.4164183-CDS-H-paniculata_contig2359:14007..14067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2359 14008..14067 +
1691480960.1416316-CDS-H-paniculata_contig2359:14007..140671691480960.1416316-CDS-H-paniculata_contig2359:14007..14067Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2359 14008..14067 +
1622929670.4358478-CDS-H-paniculata_contig2359:14612..147281622929670.4358478-CDS-H-paniculata_contig2359:14612..14728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2359 14613..14728 +
1691480960.150258-CDS-H-paniculata_contig2359:14612..147281691480960.150258-CDS-H-paniculata_contig2359:14612..14728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2359 14613..14728 +
1622929670.4585073-CDS-H-paniculata_contig2359:15917..159981622929670.4585073-CDS-H-paniculata_contig2359:15917..15998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2359 15918..15998 +
1691480960.1601217-CDS-H-paniculata_contig2359:15917..159981691480960.1601217-CDS-H-paniculata_contig2359:15917..15998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2359 15918..15998 +
1622929670.4769154-CDS-H-paniculata_contig2359:16838..170091622929670.4769154-CDS-H-paniculata_contig2359:16838..17009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2359 16839..17009 +
1691480960.1708446-CDS-H-paniculata_contig2359:16838..170091691480960.1708446-CDS-H-paniculata_contig2359:16838..17009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2359 16839..17009 +
1622929670.4960134-CDS-H-paniculata_contig2359:17510..176281622929670.4960134-CDS-H-paniculata_contig2359:17510..17628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2359 17511..17628 +
1691480960.1801732-CDS-H-paniculata_contig2359:17510..176281691480960.1801732-CDS-H-paniculata_contig2359:17510..17628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2359 17511..17628 +
1622929670.51874-CDS-H-paniculata_contig2359:18804..189211622929670.51874-CDS-H-paniculata_contig2359:18804..18921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2359 18805..18921 +
1691480960.1884632-CDS-H-paniculata_contig2359:18804..189211691480960.1884632-CDS-H-paniculata_contig2359:18804..18921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2359 18805..18921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2359.6370.1prot_H-paniculata_contig2359.6370.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2359 14008..18921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2359.6370.1

>prot_H-paniculata_contig2359.6370.1 ID=prot_H-paniculata_contig2359.6370.1|Name=mRNA_H-paniculata_contig2359.6370.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=221bp
MKRKAEEVNKQNLSAKSRDEVEEMLLNATRLFKEKALLAQTLKENIAILL
EENRQRVSKWKGMKRYIERRTTMLFNQYLQKKGSAGEVRFNDEEKKLGLT
YQKSNTDETSQCNDVKQLSGGERSFATLALLLALGSQHECPFRVMDEFDV
FMDAMSRNIAIKSVIEFAAEFDKRQFIFITPQDLSSVQANTSIKIHKMLP
PQKGDHNQSTLEEAFANNNS*
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mRNA from alignment at H-paniculata_contig2359:12911..19789+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2359.6370.1 ID=mRNA_H-paniculata_contig2359.6370.1|Name=mRNA_H-paniculata_contig2359.6370.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6879bp|location=Sequence derived from alignment at H-paniculata_contig2359:12911..19789+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAGAAGGGGTCGGAGTGGGACGGGATCAGAATCAGGCACCGGTACGGT
GTGACTGCCTACCACAACAGGGTGAGGAAAAACGCAGCATTGGCCCGCAT
TGACCCGCATTGACCCGTTTTGAAAAAATCCTGGTATAGAGAATGAGAAA
GATAATCCAAGAGTGACGTCATCATCATGATCTTATCATCATCGTTGTCG
TCTTTACGGTGTTAGAGCTCTAGGGTGTTCCCGTACACGAACATCTATCT
GTAAGTAACGATTTGGCCCTGCATAGCTCATGGTGAGAGCTACTCATCGA
CCTGCACCATCTTCTCGCTACAGAAATAAATTCCTTTTCATAACCTGCAG
ATTTCGCGAAACTCGCGAAACTTCCGAAATTTCATACATGTATCTACATA
TCTTTTTTCTTTTTTTTCTCGGTGCCTCACAAAATGACTTGCTTTTGGTT
TCAGCTGTACTTGCAGCAGGTGAGGTAGTTTTTGGTACTGCACGTCAAGA
CGCCGTGACAGGCCCTTCAAATAAGCGTATTTTTCATATTTGTGATGTGT
TTGTTCCTAAAGTTTGATGTCAATGAGTTTAAATCACTTCCCCATACAAG
TGCGAACACCCGGAATTTTCAATGTGAAAAATTGCGTGTTCGTTGTGTTG
CCTTATAGAATAATAAAGTATTCACCCCTGTTTATTCGTCTTGATATTGT
AGCGGTCGCGTTTGTCAGTCATAGATGGTCCAGAGCACATGTATTAGACA
TGCTTATGCTGCCTACTTGGAGCTCTTGAGATAAAAGTGAAAAACAAGTG
TTCGTCTGAGTTTCAGCGTGTGAGGTATGTATGATGACACATGGAATGAA
GCGTTGACCCCCGTTTATTCAATTATGAATTATTTATCATATCTTCCGCG
GTTGTAGACGATCCAGGGCGCATAGAGTAAACATGGTCGTGCTGAGCCAT
CAGACGAATACTTGATTAGAAGAAATGGCGTGAACCATGTGAAATATTAG
TTTGTATTCGTTCGGGGGGATGAAAAGGTTGAGTGGGGTGTTTCCGTGTG
TGTGTTGTTTTGCTTTTTTTTAATCGTTTTTCCAGATCGAAGTTCTCATG
AAGAGGAAAGCGGAGGAGGTAAACAAACAGAATCTTTCGGCGAAGAGCAG
AGATGAGGTGAGTGCTACTGTGCGTTTTTAGTCTCCATCCGTTGGAGTAT
GTTCCATAATATGCACATGTTCCGAGCTGTTTTTTTTTTTGCACCTGTCG
TCGTCGGACAACAACATCGAACATGGTAATGAAATGCTCAAGACTAACAG
AACCGATTTTAAGACCTGAAAAGATAAGGAAGCAATGATCTGTTTTTGTT
CTGTCATACGTGTGATTTATGATTTTTGGGCAGGGAAAGGTTAGCAGAAT
ATATTCGATTGAGTGAGTTGTTGATGTCTACTTTGAAAGGAACCTAGACA
GCGAAAACTGACAGCAAAGCCCACGTAGGTTTTTGCGGCTCACGTCGAAC
GCCGAAAATGCTTCAATTCGCCCCGACGGGCTGCTGCTATTCGCGACTGT
AGTATAGATATTAGAGCCTCTAGTGGTTTTTGTTTCGTCGTTCTTGTGAC
ACCTTCTCTCTCTCTTTCCCTTTCTCTCTCTATTCTCCTTGGTGTCTGTA
TCTTCCGCTCCTTTGTCCTTTCATTGTGTACTTTGTTCATGTGGTGATTC
AGGTGGAGGAGATGCTGCTTAACGCTACCAGATTGTTCAAGGAGAAGGCT
TTGCTGGCACAGACCCTCAAGGAGAACATCGCAATCCTGCTTGAGGAGAA
CAGACAGCGCGTTTCCAAGTAAGCCTGCGTGGAAGTGCTCAAGCCGACTG
TGTGTTCTGTGGCTTTGATACTTTCATAAGATGACTGTTGCTGTTCGCTG
TGTTGCACAGTATGCTGGCTGCTTTATTATATGAAATCTTATTTTGTATC
TACAAAGTTAGCCCCAAAAACGTTAATGCTAATAATAAGATTGTTGTGCT
TCCATTGTTCTTTTTTTTGGTTCTAACAGCACAAAATACGCGAAAAACTC
TGGTAAATATTCAGAATTAAAAAATTGTTCCGAAACGATCACCAGGTGCG
TCACTCTCACCCCTAGTAGGTGGTAGGACCATGGAGATCCTTCCCGCTTC
GTTCCTAGCCCAGTAAACCCCATACATAGTACCACGAAAGCGCCTTCAAG
AGTGCACTTCCCCTTGGGTACCATACTAGACATCGCAAATGGTAAAAGGA
GAGGTTAAACACGGACCTACGCCCGAACGGGTAGGGTAGCTTGTGAACTG
AGCATGACTGGAAGTCTAGTCAGAGATCTTTTAGCGGGTGCAACCCCTAC
ACTGCCTACTTGGTTCGGCCGAACCGGGGTGGCGCCTACCCCGCAGAGGA
ATAAATAACTCTGTTCTGTTAAAGGAAACGTAGAAATACTGCGATAGAAA
TACTTCGGTAGAAATACTCAAGTATGGAAGCATCGGATAAAGGTTTTTGC
CTTAGCCTTCCGGGGGTTTAAAAAAGAGGAGGAAAGGTTGAAATTTCTGG
CCATTTATGTGTAGTACCTAATGTTCTTGTTGTGCATGTTTTTTGTGAGA
CAGGCGCACGGTCATACTAGTTTCTTCCGAAGTGTGAGCACAACGAATTG
TGGAAAATATGACCAGAGAATTGAGATTTGCGCGTTATATAGTTGTAAAA
ATAACGAGAGAGTGCTGCTGAGCGAAGCGTTGGTACTGAGCTCGTAGAAG
TAGCAGCTGCCACTGAAGACTCGATGTAGATTACATGTTCATTCGTTCAT
TACGATATACTAGGTTCGGCCTAGACTGTGTTGTTTGTCGTGTTTGTTCG
AGTAGGAGCTGAACGTTTTCTCTCTTGGGTTGTTGATTAGTTTTTCTTAT
TTTTGTAGGTACGAGATTAAGTTGTTATTGTCATTTTCTTGAGTGATTCA
GTCATACGTCTATATACATATATATATAAATATGTGTGTGTGTGTGTTTC
CCTGCAGGTGGAAGGGGATGAAGAGATACATCGAACGCCGCACAACGATG
CTGTTCAACCAGTATCTGCAGAAGAAGGGATCGGCAGGGTAAGTGAAGGA
GGGAGTGTTGTCATTTTCCACTGGAGTCTATTCCAGATTTAGGTCGGTCA
CACACTTGTTATAAGGCAAACGTATTTTTTAACGTGGGTGTTCATGAACT
CGGGTTGGCACCCTGTCACAATTTTCACACACACATGGGAGTTTTCGGGA
TACAGCACTGCCTTTCGGGATGATGGTTGGGACGTTCATCACGGGGGGTG
TTCAGCTCCGTATCATGAATGATAACAAACCTCTTACGTAGTTGTTTATT
AGCACGGGTAGGTATTCAGGAAAGGGTGGTTTACGTCAGGCATGGTGTTA
TCCCCTGTATAGTCTGCTGCTAAGGTAAGATGTCCCCGAATAGGGCGAGT
TTGATTTTCAAGGCGGTCGTTTCTTACGTGTGACATTTTGGTGGATACCC
TCGCGCAAGATTGGCGTACGTACCCAGTGTATCTGTCGCTCTGGGAACGG
AACAGAACAGAACAGAACAAAATAGATTCTGTAGTGTAGGCTTGCAACGT
TTGGCACGTGTGTTGTTAAATCGACATAATATGCTTCTAATGAAAATTGA
TATATTCTGCGTGTTATATATATATATATATATATATATATATATACATA
CATAAAGAGAGAGAGAGAGACAGATTTATAAACTTTGTGGATGTAGCTTT
TTCTTTTTCCAATCCCATGCAGAGCCGCTCTGCTTTTCGCGTCTCATCTG
AAGTGACTAACTTTTGTTCTGTATTCCGTAGAGGCCGTTGGCTATTTTTT
AATTTCACTTGGTTAGGTGTCTTGTCCCGTGTTCTCATATCACGCTTCGA
TCTGATTTAATTTGATCTGATTTGACAGAGAAGTGAGATTCAACGACGAG
GAGAAAAAGCTCGGCCTCACGTACCAAAAGAGCAACACGGATGAGACTTC
ACAATGCAACGACGTCAAGCAGCTCTCGGGCGGAGAACGCTCTTTCGCCA
CCTTGGCTCTGCTCCTGGCGTTGGGTTCCCAGCACGAGTGTCCCTTCAGG
TGACGAGTGGCCCTTGTAGCGCCGTTTTTCAAGAGGTTGTTTTAGACCAA
CAATGACCAAAACAAATTGACAACAGTGTCGAGCACCGGAGTCTGTGTAA
CCTATGTTGCAACCGACACAAAACTGAAAAATATCCTAACCAAAATCGAC
AGACCAACAATGACCAAAACAAAATGACCACAGTGTCGAGCACCGGAGTC
TGTGTAACCTATGTTGCAACCAACACAAAACTGAAAAATAATGTAACCAA
AATCGACGGACTCAGCTGAGTAATCACCAAAGTGCACATGAGCCAAATCT
AGTGTAGTTTGGCACCCGCTAGTTTTGAAAATAACATGAACTAAAGGTTC
ATTTTTGTATGTACAGTAGCAAGTCTTATTTTTTCATGATGAATTACTTA
GGTGGACTTTTTCTTTTCAGTGTGTCTCGAATTCTGGTTGACGTCAAGTG
TCATGGTGGTAGCTTAACCAAAGGTGTCTCGTCTACAAATGCGCGTGCAG
GGTGATGGACGAGTTTGACGTGTTCATGGACGCTATGAGCCGGAACATAG
CCATCAAGTCCGTCATCGAGTTCGCAGCTGAGTTCGACAAGAGACAGTTC
ATTTTCATTACTCCTCAGGTGGGTCATTGTAATGGTGATGTTGATGGTTT
ACGGCACTCTATGGGTTATTGAGCCTTAGAGGGCTCACCCTTTGAAACTC
TGTTTTTGGTTCAGCGGTTTGTTTTCCCATACAAAAAAGCCATATATGCT
GGGAAGTAATGTAAGTTGCAATTATCGAGGCGAGAAAATGAGCGATCTCT
TGTCTTGTCTCATAACAGCAGCAGTGGTTGATTTGCGCTTATCTTGCATC
CGAAGGGATTAATAGCGCTAGTTGCCAGTACTTGGTGGCTGAACTAAGCC
AGGTCAAGACAGTTGCGTTCCGCTAGCAAGAAACGTTTTTTTCGGGTCAA
AATCAGTTCTCACTGTGTAACCGCACTTGAAACGGCATGTGTTGGATTTA
TTGTGTCTAAGAATTAATAGTGGACCGCAATTTTATATCAATTTCGTGTG
CCGAATTTCATGGAACTGATTTCCAAACAAAATGAGCTGGAGCAGGTGCT
TTCTGCAACCATCTGTACTTTTCTACAGATGGTTGCTACCTCACCGCCAA
CCAGGGTGAAGTACCCATCTCGCGCTCTGTAGTCATTATTTATCGTCAGA
ACTTGTTGACTTTGAAGCTATCAAGTGCTTCATCAGCTCGCCGTGAAATT
AGATGCTTCCGCCGGACCGTTGGCTTATTGTGTAGAGCCTCTGGATATGT
AACCCCCTCGTGTTTGCTGCTTAATTGATAGACCAGCTTGTCTAAGAGTG
AACGCGTGGACCCCGACCTCTCTACTGTACGTTTTCTCATGTTGTATAGT
TATTCCGTAGCGCTGTTCTACAATATGTCGATTCCATGTGGGTACAGGTC
GTGCCTGCTCTATGCGAACCCTGCATAAACGCACTTCCCCGCATCAAGGC
AACATTTTTGGCTTTTTTAACAATGACTGGAAAATAGGAACACCGCCGTA
GCGTAAGCTAGAATTCAAGGCTCCGTTGAGATTTACCTGTTGTCCTGGCC
ACGTACAGTATGCACGTGTACTTATTTATCTTGAGGACACTCGGAGTTCT
GGTTGTAGACCAGTAGCCTTGTTGCGAAGCGAGCACAGCCTAACGCTGTA
TCCCGATTTTACCGTTTCTGGCTCTGTATCTGCCTTCCCCACGCCCCTCC
CCGAATATAATGAATGTATTGCCGATGAATGCAACGCCATGCAGGACCTG
TCGTCGGTGCAGGCAAATACCTCCATCAAGATCCACAAAATGCTACCGCC
TCAGAAGGGAGACCACAACCAATCGACCCTAGAGGAGGCATTCGCCAACA
ACAACTCTTAATTTTGGAAACCCTTCTAGACGGCTGCGGAGAACACTTGG
GACTTGTGGCTGCACACCATTAGCCGGCTTACTGAGCAAGGACAACTATT
TCTGTTTCCCGCCATTCGGTCTTTCCCCCCAAAAAAGTAGAGGCCATTCA
ATCCAGGAAAACGTTTCGGTGCCGGCATATAGAGAAACTTTCGTCAAGTC
CACATATTGCAAGGTGCCTAAGAAGGGAGACAACAACCAACCCACCCCCG
AGCAGGCATTCGTTAAAGCCTCTTGAAATCGAGAACCCTTGAAAGACGGC
TGCAGAAAAAGCGGATTGGATCTTTCACGCCCAGTGTAAAACGTGATGTC
CTGCTGGCGACATGAGGGGTTGATGTCGCATGGAGTATATATAGCACAGT
ACAGTGCGCTAATGTGAAGGCTAGGAAGTTGATTCGTTTGAAAAACAGGT
GATGGGTGTATTGTTGTATTTTTCAGGCACGGGACATGGTGTTTGGGCGG
GGGCCGGACTAATCTGGATACCTGTGGCCACGGGTCTGAGAAATCGGGCA
GCACTGACCTGTTCGAGACACCCAACAAACCCCACAGAAAAGAAAACAAC
CCTTGAACCAGCAGGGTTACCGATTATTCTCTCTATTTTCGCCGCTGAGG
GCTGTGGGTTATAGCACCTGTACAGGAGGCGTTTGGACGTTGGTGCTCCC
CCCCCCCCCATCTCTGGTTGTAAGCTTTAACGTGTCGATTGTAACCATGT
GTACAGTACTGTAATGTTCCTCCAAGTCGTGTGTGTGTTTGTTTTATTGC
TTGAGGTTTGCGGCAGGGGCCGTTCAAGTATGACCAGCCCTCTATTCAGC
AAAATATTCCTCGTTAACAATACCTATCA
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Coding sequence (CDS) from alignment at H-paniculata_contig2359:12911..19789+

>mRNA_H-paniculata_contig2359.6370.1 ID=mRNA_H-paniculata_contig2359.6370.1|Name=mRNA_H-paniculata_contig2359.6370.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1326bp|location=Sequence derived from alignment at H-paniculata_contig2359:12911..19789+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAGGAAAGCGGAGGAGGTAAACAAACAGAATCTTTCGGCGAAGAG
CAGAGATGAGATGAAGAGGAAAGCGGAGGAGGTAAACAAACAGAATCTTT
CGGCGAAGAGCAGAGATGAGGTGGAGGAGATGCTGCTTAACGCTACCAGA
TTGTTCAAGGAGAAGGCTTTGCTGGCACAGACCCTCAAGGAGAACATCGC
AATCCTGCTTGAGGAGAACAGACAGCGCGTTTCCAAGTGGAGGAGATGCT
GCTTAACGCTACCAGATTGTTCAAGGAGAAGGCTTTGCTGGCACAGACCC
TCAAGGAGAACATCGCAATCCTGCTTGAGGAGAACAGACAGCGCGTTTCC
AAGTGGAAGGGGATGAAGAGATACATCGAACGCCGCACAACGATGCTGTT
CAACCAGTATCTGCAGAAGAAGGGATCGGCAGGGTGGAAGGGGATGAAGA
GATACATCGAACGCCGCACAACGATGCTGTTCAACCAGTATCTGCAGAAG
AAGGGATCGGCAGGAGAAGTGAGATTCAACGACGAGGAGAAAAAGCTCGG
CCTCACGTACCAAAAGAGCAACACGGATGAGACTTCACAATGCAACGACG
TCAAGCAGCTCTCGGGCGGAGAACGCTCTTTCGCCACCTTGGCTCTGCTC
CTGGCGTTGGGTTCCCAGCACGAGTGTCCCTTCAGAGAAGTGAGATTCAA
CGACGAGGAGAAAAAGCTCGGCCTCACGTACCAAAAGAGCAACACGGATG
AGACTTCACAATGCAACGACGTCAAGCAGCTCTCGGGCGGAGAACGCTCT
TTCGCCACCTTGGCTCTGCTCCTGGCGTTGGGTTCCCAGCACGAGTGTCC
CTTCAGGGTGATGGACGAGTTTGACGTGTTCATGGACGCTATGAGCCGGA
ACATAGCCATCAAGTCCGTCATCGAGTTCGCAGCTGAGTTCGACAAGAGA
CAGTTCATTTTCATTACTCCTCAGGGTGATGGACGAGTTTGACGTGTTCA
TGGACGCTATGAGCCGGAACATAGCCATCAAGTCCGTCATCGAGTTCGCA
GCTGAGTTCGACAAGAGACAGTTCATTTTCATTACTCCTCAGGACCTGTC
GTCGGTGCAGGCAAATACCTCCATCAAGATCCACAAAATGCTACCGCCTC
AGAAGGGAGACCACAACCAATCGACCCTAGAGGAGGCATTCGCCAACAAC
AACTCTTAAGACCTGTCGTCGGTGCAGGCAAATACCTCCATCAAGATCCA
CAAAATGCTACCGCCTCAGAAGGGAGACCACAACCAATCGACCCTAGAGG
AGGCATTCGCCAACAACAACTCTTAA
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