mRNA_H-paniculata_contig2346.6334.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2346.6334.1 vs. uniprot
Match: D7FQB8_ECTSI (Folate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB8_ECTSI) HSP 1 Score: 251 bits (641), Expect = 1.710e-73 Identity = 123/162 (75.93%), Postives = 136/162 (83.95%), Query Frame = 2
Query: 1247 QGLGPALFGNAVAWGGFFYCYERFKEFARGR-SIEAELGPLHHLGAGFMAGAAMVFATNPVWMIKTRMQLQNTAVTSDAVRPYTGFSDAVRTIVREEGPLALYKGAVPALMLCTQGAVQFTVYEWLKARVPKQSENTPLESLVMGGISKILSSLVTYPSQVI 1729
QGLGPAL GNAVAWGGFFYCYE+ K R R EA+LG +HHLGAG++AGA MV ATNPVWMIKTRMQLQ+ S VRPY+G DAVRTI REEGPLALYKGAVPALMLC QGAVQF VYEWLKARVPK++ENTP ESL+MGG SKILS+LVTYP+Q +
Sbjct: 100 QGLGPALLGNAVAWGGFFYCYEKIKTAIRARVPQEADLGAVHHLGAGYVAGAMMVLATNPVWMIKTRMQLQDKKAKSGGVRPYSGLMDAVRTITREEGPLALYKGAVPALMLCGQGAVQFAVYEWLKARVPKRNENTPQESLLMGGASKILSTLVTYPTQYL 261
BLAST of mRNA_H-paniculata_contig2346.6334.1 vs. uniprot
Match: A0A835YH58_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH58_9STRA) HSP 1 Score: 233 bits (593), Expect = 1.560e-65 Identity = 123/230 (53.48%), Postives = 158/230 (68.70%), Query Frame = 2
Query: 1250 GLGPALFGNAVAWGGFFYCYERFKEFARGRSIEAELGPLHHLGAGFMAGAAMVFATNPVWMIKTRMQLQNTAVTSD-AVRPYTGFSDAVRTIVREEGPLALYKGAVPALMLCTQGAVQFTVYEWLKARVPKQ-SENTPLESLVMGGISKILSSLVTYPSQVIKSRLQQRGTQSEIRTSVSR--YRGVIHCATTIARREGMRGFFKGCVPYAVRAAPASAITFVVYEEVMK 1927
GL P+++G +AWG +FY Y+ K+ + + +L HHL AG + +V NPVW++KTR+QLQ T RPY GF+DA+ TI REEG LALYKG VPA++L TQGA+QF YEWLK VP+ ++ P+ESLVMGG SKI +S+VTYP+QVIK+RLQ R + + R Y G CA I R+EG RGFF+GCVPYA+RAAPASA+TFVVYEE M+
Sbjct: 108 GLVPSVWGGGLAWGAYFYLYQMSKDALQTGTGAEQLNVSHHLTAGNI----LVLLGNPVWLVKTRLQLQTRDNTQRLGRRPYRGFTDALVTIAREEGALALYKGIVPAMLLSTQGALQFAAYEWLKGWVPRDLQQSKPVESLVMGGGSKIFASVVTYPTQVIKTRLQDRAAAAVSAAAAGRSIYTGTAQCAALIWRQEGARGFFRGCVPYALRAAPASAVTFVVYEEAMR 333
BLAST of mRNA_H-paniculata_contig2346.6334.1 vs. uniprot
Match: B7FQZ1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQZ1_PHATC) HSP 1 Score: 198 bits (504), Expect = 1.520e-53 Identity = 109/236 (46.19%), Postives = 139/236 (58.90%), Query Frame = 2
Query: 1250 GLGPALFGNAVAWGGFFYCYERFKEFARGRSIEAELGPLHHLGAGFMAGAAMVFATNPVWMIKTRMQLQNTAVTSDA-VRPYTGFSDAVRTIVREEGPLALYKGAVPALMLCTQGAVQFTVYEWLKARVPKQSENTPLESLVMGGISKILSSLVTYPSQVIKSRLQQRG------TQSEIRTSVSRYRGVIHCATTIARREGMRGFFKGCVPYAVRAAPASAITFVVYEEVMKFLN 1936
G PA+ G+AV+WGG+F+ YE FK+ + L L + AG MV TNP+W+IK RMQLQ + ++PY DAV TIVREEGPLALYKG PAL+L + G VQF VYE+LK Q N GI+K L + VTYP Q IK+R+QQR E+R YRG+ + R+EG GFFKGC+P A+R AP +AITFVVYE +M +L+
Sbjct: 76 GWTPAVIGSAVSWGGYFFFYESFKKQLSASDV---LSSLDNFALACTAGGVMVLMTNPIWLIKIRMQLQMKRASELLNIKPYRNIGDAVATIVREEGPLALYKGVGPALLLTSHGGVQFVVYEYLKKHFRFQRINREETGRATQGITKRLQNTVTYPLQTIKARMQQRSDALEFTADGEVRAVRRDYRGLFSTIKRVFRQEGFVGFFKGCIPNAIRVAPGAAITFVVYEALMDYLD 308
BLAST of mRNA_H-paniculata_contig2346.6334.1 vs. uniprot
Match: W7T4J3_9STRA (Mitochondrial folate transporter carrier-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4J3_9STRA) HSP 1 Score: 201 bits (510), Expect = 4.820e-53 Identity = 117/251 (46.61%), Postives = 152/251 (60.56%), Query Frame = 2
Query: 1247 QGLGPALFGNAVAWGGFFYCYERFKEFARGRSIEAELGPLHHLGAGFMAGAAMVFATNPVWMIKTRMQLQ----------NTAVTSDAVRP----------YTGFSDAVRTIVREEGPLALYKGAVPALMLCTQGAVQFTVYEWLKARVPKQSENTPLESL-VMGGISKILSSLVTYPSQVIKSRLQQRGTQSEIRTSVSRYRGVIHCATTIARREGMRGFFKGCVPYAVRAAPASAITFVVYEEVMKFLN 1936
+GL PAL N ++WGG+FY YE K R ++ +HHL + F AG MVF TNP+W+IKTRMQLQ AVT+ V YTG + A+RTIVREEG L LYKG +PAL+L + GA+QF YEWLK V + P+ S V+GG++KIL+ LVTYP QV+K+RLQQR T + S RY C I R EG+ GFFKGC+P ++ AP++ ITF+VYE+ + N
Sbjct: 134 KGLTPALLANGLSWGGYFYFYEHAKN--RYLRQHRQITSVHHLLSAFEAGIIMVFLTNPLWLIKTRMQLQPGGASALESMTKAVTAPIVASTASHLGKQIAYTGVTQALRTIVREEGVLGLYKGILPALLLTSHGAIQFVTYEWLKKVV--EPYQAPVFSFSVLGGMAKILAGLVTYPPQVVKARLQQRDTGA----SRWRYTSTWDCVLKIWRFEGLLGFFKGCLPNVLKTAPSAVITFLVYEQCVFSFN 376
BLAST of mRNA_H-paniculata_contig2346.6334.1 vs. uniprot
Match: B5YLY4_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YLY4_THAPS) HSP 1 Score: 196 bits (497), Expect = 8.170e-53 Identity = 114/243 (46.91%), Postives = 141/243 (58.02%), Query Frame = 2
Query: 1247 QGLGPALFGNAVAWGGFFYCYERFKEFARGRSIEAELGPLHHLGAGFMAGAAMVFATNPVWMIKTRMQLQNTAVTSDAVRP--------YTGFSDAVRTIVREEGPLALYKGAVPALMLCTQGAVQFTVYEWLKA------RVPKQSENTPLESLVMGGISKILSSLVTYPSQVIKSRLQQRGTQSEIRTSVSRYRGVIHCATTIARREGMRGFFKGCVPYAVRAAPASAITFVVYEEVMKFL 1933
+GL PA+ G+A +WGGFF YE K+ R I+ L ++GA MV TNP+W+IKTR+QLQN+ + +P Y G A TIV+EEG LALYKG+VPALML + G +QF YEWLK R + LVMG SK ++S TYP QVIK+RLQQR S Y GVI C I R EG+ GFFKGCV A+R AP++AITFVVYE V+ L
Sbjct: 56 KGLTPAIIGSAASWGGFFILYEEMKQVMLQRKIKFANAALD---TSCLSGACMVALTNPLWLIKTRLQLQNSRLQQQLSQPNGPPLKPPYRGLVHAAFTIVKEEGVLALYKGSVPALMLVSHGGIQFVSYEWLKGHFAAWNRTIGERLRASFGYLVMGATSKFIASTTTYPLQVIKARLQQR--------SQREYSGVIDCVGKIWRNEGVGGFFKGCVTNALRVAPSAAITFVVYESVLDAL 287
BLAST of mRNA_H-paniculata_contig2346.6334.1 vs. uniprot
Match: A0A7S4JAZ4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAZ4_9STRA) HSP 1 Score: 197 bits (501), Expect = 1.000e-51 Identity = 135/320 (42.19%), Postives = 160/320 (50.00%), Query Frame = 2
Query: 1247 QGLGPALFGNAVAWGGFFYCYERFKE--------------FARGRSIEA-------------------------------------ELGPLHHLGAGFMAGAAMVFATNPVWMIKTRMQLQNTAV---TSDAVR----------PYTGFSDAVRTIVREEGPLALYKGAVPALMLCTQGAVQFTVYEWLK---------ARVPK----QSENTPLESL-------VMGGISKILSSLVTYPSQVIKSRLQQRGTQSEIRTS-----VSR-YRGVIHCATTIARREGMRGFFKGCVPYAVRAAPASAITFVVYEEVMKFLN 1936
QGL PAL G+A +WGG+F+ YE K RG S +A LGP+ + A AGAAMV TNPVW+IKTRMQLQ D +R PY +DA RTIVREEGPLALYKGAVPALML + G VQF YE+LK AR K Q N +E L MG +SK+++S TYP QVIK+RLQQR E+ + V R Y GV C I R EG GFFKGC+P AVR AP++AITFV+YE VM L+
Sbjct: 112 QGLTPALVGSAASWGGYFFLYEGIKREWIERRREERERRRMRRGPSNDAAGTRPHDLSKDMHVDEEIDLRNGDGDDDDCGGANEHCSLGPMENFSAACAAGAAMVLVTNPVWLIKTRMQLQMKRTLERNKDCIRGAKGGADVKPPYRSMADAARTIVREEGPLALYKGAVPALMLVSHGGVQFVSYEFLKEHFGTYTRAARSRKDEAGQERNGTMEKLQDSLGYLAMGAVSKMIASTATYPLQVIKARLQQRNQSVELTEAGDLAVVRREYGGVADCVARIFRNEGPVGFFKGCIPNAVRVAPSAAITFVMYETVMDMLS 431
BLAST of mRNA_H-paniculata_contig2346.6334.1 vs. uniprot
Match: A0A8J2T2A8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2A8_9STRA) HSP 1 Score: 189 bits (480), Expect = 1.980e-50 Identity = 114/294 (38.78%), Postives = 157/294 (53.40%), Query Frame = 2
Query: 1064 IYP---ASTRLRDQANVNNT**IILIRSAVEARAGMRASFDVLPIPSSSFCVKY*CQR*CPVCVQGLGPALFGNAVAWGGFFYCYERFKEFARGRSIEAELGPLHHLGAGFMAGAAMVFATNPVWMIKTRMQLQNTAVTSDAVRPYTGFSDAVRTIVREEGPLALYKGAVPALMLCTQGAVQFTVYEWLKARVPKQSENTPLESLVMGGISKILSSLVTYPSQVIKSRLQQR--GTQSEIRTSV--SRYRGVIHCATTIARREGMRGFFKGCVPYAVRAAPASAITFVVYEEVM 1924
+YP R + V ++ S+V R G+R+ F+ GL PAL G+A++WGGFFY YERFK ++H A +GA MV TNPVW++KTR+QLQ + Y G DA I++EEG LALY+G +PAL L + GAVQF VYE LK P ++ E+LV GG+SK+ ++ TYP QV+K+R+QQR T S + ++ + C R EG+RGFFKGC P A+R AP++A+TF YE V+
Sbjct: 29 LYPLDLVKVRFQADTRVERMPGVVAAASSVIRREGLRSLFN------------------------GLSPALLGSALSWGGFFYFYERFKP--------QNASAMNHAVASIQSGACMVLLTNPVWLVKTRLQLQKD-------QRYKGILDAFSRIIKEEGWLALYRGILPALFLTSHGAVQFVVYEKLKELRPPSTDAGRSEALVYGGVSKLAAATATYPYQVVKTRVQQRYPNTNSNFKGNLPAGEIARTLKCVGDTFRVEGIRGFFKGCWPNALRVAPSAALTFWTYEVVV 283
BLAST of mRNA_H-paniculata_contig2346.6334.1 vs. uniprot
Match: FOLT1_ARATH (Folate transporter 1, chloroplastic n=35 Tax=Brassicaceae TaxID=3700 RepID=FOLT1_ARATH) HSP 1 Score: 189 bits (480), Expect = 3.120e-50 Identity = 110/250 (44.00%), Postives = 155/250 (62.00%), Query Frame = 2
Query: 1250 GLGPALFGNAVAWGGFFYCYERFKE-FARGRSIEAELGPLHHLGAGFMAGAAMVFATNPVWMIKTRMQLQNTAVTSDAVRPYTGFSDAVRTIVREEGPLALYKGAVPALMLCTQGAVQFTVYEWLKARVP------KQSENTP-----LESLVMGGISKILSSLVTYPSQVIKSRLQQRGTQSEIRTSVSRYRGVIHCATTIARREGMRGFFKGCVPYAVRAAPASAITFVVYEEVMKFLN*SRQHRPTT 1963
G PA+ G+ V+WG +F+ Y R K+ +ARGR E +L P HL + AGA + TNP+W++KTR+QLQ +PY+G DA RTIV+EEGP ALYKG VP L+L + GA+QFT YE L+ + ++SE+T + +GG SK+ + L+TYP QVI++RLQQR + + + RY +H AR EG+RGF++G ++ PAS+ITF+VYE V+K L +QH PTT
Sbjct: 69 GFFPAVIGSTVSWGLYFFFYGRAKQRYARGRDDE-KLSPALHLASAAEAGALVCLCTNPIWLVKTRLQLQTPL---HQTQPYSGLLDAFRTIVKEEGPRALYKGIVPGLVLVSHGAIQFTAYEELRKIIVDLKERRRKSESTDNLLNSADYAALGGSSKVAAVLLTYPFQVIRARLQQRPSTN----GIPRYIDSLHVIRETARYEGLRGFYRGLTANLLKNVPASSITFIVYENVLKLL---KQH-PTT 306
BLAST of mRNA_H-paniculata_contig2346.6334.1 vs. uniprot
Match: A0A1U8FRE8_CAPAN (folate transporter 1, chloroplastic-like isoform X2 n=2 Tax=Solanoideae TaxID=424551 RepID=A0A1U8FRE8_CAPAN) HSP 1 Score: 186 bits (471), Expect = 1.030e-49 Identity = 105/247 (42.51%), Postives = 148/247 (59.92%), Query Frame = 2
Query: 1250 GLGPALFGNAVAWGGFFYCYERFKE-FARGRSIEAELGPLHHLGAGFMAGAAMVFATNPVWMIKTRMQLQNTAVTSDAVRPYTGFSDAVRTIVREEGPLALYKGAVPALMLCTQGAVQFTVYEWLK---ARVPKQSENTPLESLV----------MGGISKILSSLVTYPSQVIKSRLQQRGTQSEIRTSVSRYRGVIHCATTIARREGMRGFFKGCVPYAVRAAPASAITFVVYEEVMKFLN*SRQ 1948
G PA+ G+ ++WG +F+ Y + K+ + R R EL P HL + AGA + F TNP+W++KTR+QLQ T + +RPYTGF DA+RTI ++EG ALYKG +P+L L T GA+QFT YE L+ + Q PL + +G SK+++ L TYP QV++SRLQQR + T V RY H AR EG+RGF++G ++ APA++ITF+VYE V+ L SR+
Sbjct: 14 GFYPAVLGSTISWGLYFFFYSKAKQRYLRNRE---ELSPGLHLASAAEAGALVCFCTNPIWLVKTRLQLQ----TPNQIRPYTGFHDALRTIFKDEGWRALYKGLMPSLFLVTHGAIQFTAYEELRKVLVSLKAQENENPLATAADLLDSVDYATLGASSKLVAVLTTYPFQVVRSRLQQRPST----TGVPRYMDSWHVVKETARFEGIRGFYRGITANVLKNAPAASITFIVYENVLNMLKFSRR 249
BLAST of mRNA_H-paniculata_contig2346.6334.1 vs. uniprot
Match: A0A836CHG8_9STRA (Folate transporter (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHG8_9STRA) HSP 1 Score: 185 bits (470), Expect = 1.080e-49 Identity = 94/166 (56.63%), Postives = 115/166 (69.28%), Query Frame = 2
Query: 1247 QGLGPALFGNAVAWGGFFYCYERFKEFARGRSIEAELGPLHHLGAGFMAGAAMVFATNPVWMIKTRMQLQNTAVTSDAV----RPYTGFSDAVRTIVREEGPLALYKGAVPALMLCTQGAVQFTVYEWLKARVPKQ-SENTPLESLVMGGISKILSSLVTYPSQVI 1729
GLGPA+ G+ V+WGG+FY YE K R S +LGP+HHL AG AG A+V TNP+W++KTRMQLQ RPYTG SDAV TIVREEG LALYKG VPAL+L QGA+QF YEWLKARVP+ ++N P ESL+MG SK+ +SLV P+ ++
Sbjct: 58 SGLGPAVLGSGVSWGGYFYLYEWAKTSMRRFSDTEKLGPVHHLTAGMAAGNALVLLTNPIWLVKTRMQLQQXXXXXXTAAAGRRPYTGLSDAVATIVREEGALALYKGVVPALLLSGQGALQFAAYEWLKARVPRNLAQNDPHESLLMGASSKVFASLVRTPNMLL 223 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2346.6334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2346.6334.1 >prot_H-paniculata_contig2346.6334.1 ID=prot_H-paniculata_contig2346.6334.1|Name=mRNA_H-paniculata_contig2346.6334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=184bp MAGAAMVFATNPVWMIKTRMQLQNTAVTSDAVRPYTGFSDAVRTIVREEGback to top mRNA from alignment at H-paniculata_contig2346:12417..17029- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2346.6334.1 ID=mRNA_H-paniculata_contig2346.6334.1|Name=mRNA_H-paniculata_contig2346.6334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4613bp|location=Sequence derived from alignment at H-paniculata_contig2346:12417..17029- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2346:12417..17029- >mRNA_H-paniculata_contig2346.6334.1 ID=mRNA_H-paniculata_contig2346.6334.1|Name=mRNA_H-paniculata_contig2346.6334.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at H-paniculata_contig2346:12417..17029- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |