mRNA_H-paniculata_contig23448.6329.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23448.6329.1
Unique NamemRNA_H-paniculata_contig23448.6329.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23448.6329.1 vs. uniprot
Match: D7G5G4_ECTSI (Lipid_desat domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G4_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.930e-23
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 QGLSTVTSPWEAILTAVGLGAGLLLADLVSGVFHWSVDNYGNGTTPVFGAVIEAFQGHH 177
            Q LSTVTSP EA+ TA G   G  +ADLVSGVFHWSVDNYG+G+TPVFGAVIEAFQGHH
Sbjct:   18 QALSTVTSPLEALWTAAGAFVGYTIADLVSGVFHWSVDNYGDGSTPVFGAVIEAFQGHH 76
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BLAST of mRNA_H-paniculata_contig23448.6329.1 vs. uniprot
Match: A0A6H5KFV9_9PHAE (Lipid_desat domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFV9_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.030e-21
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 QGLSTVTSPWEAILTAVGLGAGLLLADLVSGVFHWSVDNYGNGTTPVFGAVIEAFQGHH 177
            Q LSTVTSP EA+ TA G   G  +ADLVSGVFHWSVDNYG+ +TPVFGAVIEAFQGHH
Sbjct:  183 QALSTVTSPLEALWTAAGAFVGYTIADLVSGVFHWSVDNYGDDSTPVFGAVIEAFQGHH 241
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BLAST of mRNA_H-paniculata_contig23448.6329.1 vs. uniprot
Match: A0A061QQN3_9CHLO (Ubiquitin-conjugating enzyme E2 variant n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QQN3_9CHLO)

HSP 1 Score: 72.0 bits (175), Expect = 1.900e-13
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 QGLSTVTSPWEAILTAVGLGAGLLLADLVSGVFHWSVDNYGNGTTPVFGAVIEAFQGHH 177
            +G S V     A+L    L A  +LADL +G++HW+VDNYG+G TPVFG  IEAFQGHH
Sbjct:  119 KGFSDVDDVETAVLACGSLAASYVLADLGTGIYHWAVDNYGSGRTPVFGKQIEAFQGHH 177
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BLAST of mRNA_H-paniculata_contig23448.6329.1 vs. uniprot
Match: A0A5B8MWA0_9CHLO (Lipid_desat domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MWA0_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 2.390e-13
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    1 QGLSTVTSPWEAILTAVGLGAGLLLADLVSGVFHWSVDNYGNGTTPVFGAVIEAFQGHH 177
            + LSTV S  +A   A+   A  +L+DL SG+FHWSVDNYG+G TP+ G VI AFQGHH
Sbjct:  106 EALSTVDSAGDASAMALSALAAWVLSDLGSGIFHWSVDNYGSGKTPILGNVIAAFQGHH 164
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BLAST of mRNA_H-paniculata_contig23448.6329.1 vs. uniprot
Match: K8YWU6_NANGC (Lipid_desat domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YWU6_NANGC)

HSP 1 Score: 69.7 bits (169), Expect = 7.280e-13
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   22 SPWEAILTAVGLGAGLLLADLVSGVFHWSVDNYGNGTTPVFGAVIEAFQGHH 177
            +P +  + A      +L +D  SG+FHWSVDNYGNG TPV G VIEAFQGHH
Sbjct:   43 TPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHH 94
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BLAST of mRNA_H-paniculata_contig23448.6329.1 vs. uniprot
Match: A0A7S4GDG3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GDG3_9EUGL)

HSP 1 Score: 70.1 bits (170), Expect = 1.200e-12
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    1 QGLSTVTSPWEAILTAVGLGAGLLLADLVSGVFHWSVDNYGNGTTPVFGAVIEAFQGHH 177
            +GL  + +P EA++ A+   A  +LAD  +G+FHWSVDNYG+  TP+ G VI++FQGHH
Sbjct:  184 KGLLQINTPAEALVGAIATLAAYILADAGTGIFHWSVDNYGDKRTPLLGGVIDSFQGHH 242
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BLAST of mRNA_H-paniculata_contig23448.6329.1 vs. uniprot
Match: W7U0R7_9STRA (Kua-ubiquitin conjugating enzyme hybrid, localization n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0R7_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.540e-12
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   22 SPWEAILTAVGLGAGLLLADLVSGVFHWSVDNYGNGTTPVFGAVIEAFQGHH 177
            +P +  + A      +L +D  SG+FHWSVDNYGNG TPV G VIEAFQGHH
Sbjct:  155 TPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHH 206
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BLAST of mRNA_H-paniculata_contig23448.6329.1 vs. uniprot
Match: A0A6S9FHC8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FHC8_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 1.640e-12
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    7 LSTVTSPWEAILTAVGLGAGLLLADLVSGVFHWSVDNYGNGTTPVFGAVIEAFQGHH 177
            +  + +P EAI          + +D  SGVFHWSVDNYGNG TP+ G+VIEAFQGHH
Sbjct:  109 IMAIQTPAEAITMGATFLFSTVFSDFFSGVFHWSVDNYGNGKTPLLGSVIEAFQGHH 165
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BLAST of mRNA_H-paniculata_contig23448.6329.1 vs. uniprot
Match: A0A5J4XEK5_9CHLO (Low CO2-induced protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XEK5_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 1.970e-12
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:    1 QGLSTVTSPWEAILTAVGLGAGLLLADLVSGVFHWSVDNYGNGTTPVFGAVIEAFQGHH 177
            QG+S +  P +A +    + A  +LAD  +GV+HWSVDNYG+G TP+ G  I AFQGHH
Sbjct:  130 QGVSGIHGPHQAAVAFAAVSAAYVLADFGTGVYHWSVDNYGSGATPIVGEQIAAFQGHH 188
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BLAST of mRNA_H-paniculata_contig23448.6329.1 vs. uniprot
Match: UPI00053C202E (fatty acid desaturase 4, chloroplastic-like n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C202E)

HSP 1 Score: 68.9 bits (167), Expect = 2.140e-12
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:   64 GLLLADLVSGVFHWSVDNYGNGTTPVFGAVIEAFQGHH 177
            G +LADL SGV+HW +DNYG+G+TPVFGA IEAFQGHH
Sbjct:  114 GYILADLGSGVYHWGIDNYGDGSTPVFGAQIEAFQGHH 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23448.6329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5G4_ECTSI1.930e-2377.97Lipid_desat domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KFV9_9PHAE2.030e-2176.27Lipid_desat domain-containing protein n=1 Tax=Ecto... [more]
A0A061QQN3_9CHLO1.900e-1355.93Ubiquitin-conjugating enzyme E2 variant n=1 Tax=Te... [more]
A0A5B8MWA0_9CHLO2.390e-1357.63Lipid_desat domain-containing protein n=1 Tax=Chlo... [more]
K8YWU6_NANGC7.280e-1357.69Lipid_desat domain-containing protein n=2 Tax=Mono... [more]
A0A7S4GDG3_9EUGL1.200e-1250.85Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
W7U0R7_9STRA1.540e-1257.69Kua-ubiquitin conjugating enzyme hybrid, localizat... [more]
A0A6S9FHC8_HETAK1.640e-1254.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5J4XEK5_9CHLO1.970e-1250.85Low CO2-induced protein n=1 Tax=Trebouxia sp. A1-2... [more]
UPI00053C202E2.140e-1276.32fatty acid desaturase 4, chloroplastic-like n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23448contigH-paniculata_contig23448:84..260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue7.9e-19
Seed eggNOG ortholog2880.D7G5G4
Preferred nameTMEM189
KEGG koko:K10704,ko:K20417,ko:K20656
KEGG Pathwayko04624,map04624
Hectar predicted targeting categorysignal peptide
GOsGO:0000151,GO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006082,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009628,GO:0009941,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016491,GO:0016567,GO:0016705,GO:0016740,GO:0019538,GO:0019637,GO:0019752,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0030433,GO:0031090,GO:0031224,GO:0031371,GO:0031625,GO:0031967,GO:0031969,GO:0031975,GO:0032446,GO:0032787,GO:0032991,GO:0033554,GO:0033559,GO:0034976,GO:0035370,GO:0036211,GO:0036503,GO:0042170,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044283,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046471,GO:0046486,GO:0050896,GO:0051603,GO:0051716,GO:0052637,GO:0055114,GO:0061630,GO:0061659,GO:0070534,GO:0070647,GO:0071704,GO:0072330,GO:0080132,GO:0080167,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901698,GO:1902494,GO:1990234
EggNOG free text desc.protein ubiquitination
EggNOG OGsKOG3011@1,KOG3011@2759
EC1.14.19.43
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400,ko04131
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929665.346462-CDS-H-paniculata_contig23448:83..2601622929665.346462-CDS-H-paniculata_contig23448:83..260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23448 84..260 -
1691480957.8169744-CDS-H-paniculata_contig23448:83..2601691480957.8169744-CDS-H-paniculata_contig23448:83..260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23448 84..260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23448.6329.1prot_H-paniculata_contig23448.6329.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23448 84..260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23448.6329.1

>prot_H-paniculata_contig23448.6329.1 ID=prot_H-paniculata_contig23448.6329.1|Name=mRNA_H-paniculata_contig23448.6329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
QGLSTVTSPWEAILTAVGLGAGLLLADLVSGVFHWSVDNYGNGTTPVFGA
VIEAFQGHH
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mRNA from alignment at H-paniculata_contig23448:84..260-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23448.6329.1 ID=mRNA_H-paniculata_contig23448.6329.1|Name=mRNA_H-paniculata_contig23448.6329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig23448:84..260- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGATTGTCCACGGTGACATCACCGTGGGAGGCGATATTGACCGCCGT
CGGACTAGGCGCGGGATTGCTTTTGGCGGACTTGGTGTCTGGTGTTTTCC
ACTGGTCCGTCGACAACTACGGAAACGGGACGACGCCTGTCTTCGGCGCC
GTCATCGAGGCTTTTCAGGGACATCAT
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Coding sequence (CDS) from alignment at H-paniculata_contig23448:84..260-

>mRNA_H-paniculata_contig23448.6329.1 ID=mRNA_H-paniculata_contig23448.6329.1|Name=mRNA_H-paniculata_contig23448.6329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig23448:84..260- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGATTGTCCACGGTGACATCACCGTGGGAGGCGATATTGACCGCCGT
CGGACTAGGCGCGGGATTGCTTTTGGCGGACTTGGTGTCTGGTGTTTTCC
ACTGGTCCGTCGACAACTACGGAAACGGGACGACGCCTGTCTTCGGCGCC
GTCATCGAGGCTTTTCAGGGACATCATCAGGGATTGTCCACGGTGACATC
ACCGTGGGAGGCGATATTGACCGCCGTCGGACTAGGCGCGGGATTGCTTT
TGGCGGACTTGGTGTCTGGTGTTTTCCACTGGTCCGTCGACAACTACGGA
AACGGGACGACGCCTGTCTTCGGCGCCGTCATCGAGGCTTTTCAGGGACA
TCAT
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