mRNA_H-paniculata_contig23414.6323.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23414.6323.1
Unique NamemRNA_H-paniculata_contig23414.6323.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23414.6323.1 vs. uniprot
Match: D7FW29_ECTSI (Abhydrolase_5 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW29_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 1.610e-93
Identity = 161/278 (57.91%), Postives = 189/278 (67.99%), Query Frame = 3
Query:  780 KEWISSCRGIGWFSDPLGKPSFFRYASDFTEFLWTTLILRSTPASEAAIEASKNPATRGSGDGIVVKLTDDYVEFQLPSGGPTKRKDLVGVIIIPGGQISPFAYSPLARALARKGYASFILRLPFNLAYYGWDTAGVIIKRPQTEDDPPAPNKWVLIGHSLGG-----FTNARPDCVNGVVYMGCSSGGLK-----ADLGLPMLYIFGSRDPFTLGAVSQMGSKEVMKDAEVFIVKGGNHRGFASYDKQPLDWEATIDESEQRRIVVEVLTEFIERRI 1583
            K  I   RG GWF+DP GKP    Y  D  EF     +LRS PA++ A EA+K+ A    GDGI+VK+TDDY+EFQ   G   K    VGVII+PGG +SPFAYS LAR+LA++GY +F+LRLPFNLA+YGW T+G IIKR QTED P  P KWVL+GHS+G      FT ARP+CVNGVVYMG   GG K     A+L LP L I GSRDPFT     Q    +  K  E  IV+GGNHRGFASY +QPLDWEATI   EQ RIV+E LTEFIER++
Sbjct:   39 KAMIHHARGKGWFADPRGKPPLLTYGRDLVEFAMKFTLLRSKPATDLAYEATKSVAISTQGDGIMVKMTDDYMEFQPKEG---KGDGKVGVIIVPGGLVSPFAYSILARSLAQRGYPTFVLRLPFNLAFYGWTTSGKIIKRTQTEDAPKPPTKWVLVGHSMGTLGVELFTEARPECVNGVVYMG---GGNKPTGKIANLDLPSLVIRGSRDPFTPEKDMQKAVDKWPKGTETCIVEGGNHRGFASYGRQPLDWEATISPDEQMRIVLEALTEFIERKV 310          
BLAST of mRNA_H-paniculata_contig23414.6323.1 vs. uniprot
Match: A0A6H5JK92_9PHAE (Abhydrolase_5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK92_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.390e-54
Identity = 118/294 (40.14%), Postives = 160/294 (54.42%), Query Frame = 3
Query:  804 GIGWFSDPLGKPSFFRYASDFTEFLWTTLILRSTPASEAAIEASKNPAT--RGS----GDGIVVKLTDDYVEF-QLPSGGPTKRKDLV-------GVIIIPGGQISPFAYSPLARALARKGYASFILRLPFNLAYYGWDTAGVIIKRPQTEDDPPA-----------PNKWVLIGHSLGG-----FTNARPDCVNGVVYMGCSS--GGLKADLGLPMLYIFGSRDPFTLGAVSQMGSKEVMKDAEVFIVKGGNHRGFASYDKQPLDWEATIDESEQRRIVVEVLTEFIERRIVS 1589
            G+G++SDPLGKPS   +     EF +  + L     ++ A+ A++  A+  RGS    GDG+ V     Y+EF   P       +D         GV+I PG  + P AY+PLAR +ARKGY S+ILR  FNLA  GW+T   II R     D              P KWVL GHS+G      F    P+ V+GVVYMG  +  G       +P + + GSRDP+         + ++ K AE+ +V+GG+HRGF SY  QPLDW+ATI E EQR I+VE LT+FI+RR+ +
Sbjct:   52 GVGYYSDPLGKPSLLSHWRGLAEFTFGAITLLPKAPTDEALAAARVTASSARGSAGWEGDGVTVMDNGSYLEFLPPPEAQACGEEDTASGNDHGTGVVIFPGALVPPSAYAPLARTMARKGYPSYILRFEFNLATKGWETTSEIISRSAPAADGEERGASCSAVVSRPTKWVLAGHSMGTVGIEMFYTEHPESVDGVVYMGSGNKIGDAMKGSEVPAMVLRGSRDPYVPAEALARSAHKLPKGAEIVVVEGGSHRGFGSYKSQPLDWQATITEQEQRGIIVEALTDFIDRRVAN 345          
BLAST of mRNA_H-paniculata_contig23414.6323.1 vs. uniprot
Match: D7FXM1_ECTSI (Abhydrolase_5 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM1_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 9.290e-31
Identity = 89/244 (36.48%), Postives = 122/244 (50.00%), Query Frame = 3
Query:  804 GIGWFSDPLGKPSFFRYASDFTEFLWTTLILRSTPASEAAIEASKNPAT---RG----SGDGIVVKLTDDYVEFQLP--------SGGPTKRKDLVGVIIIPGGQISPFAYSPLARALARKGYASFILRLPFNLAYYGWDTAGVIIKRPQTEDDPPA-----------PNKWVLIGHSLGG-----FTNARPDCVNGVVYMGCSSGGLKADL----GLPMLYIFGSRDPFTLGAVSQMGSKEVM 1430
            G+G++SDPLGKPS   +     EF + ++ L    +++ A+ A++  A+   RG     GDG+ V  T  Y+EF  P        +   + +    GV+I PG  + P AY+PLAR +ARKGY S+ILR  FNLA  GW+    II R     D              P KWVL GHS+G      F    P+ V+GVVYMG  SG +  D      +P + + GSRDPF    V     K V+
Sbjct:   52 GVGYYSDPLGKPSLLSHWRGLAEFTFGSITLLPKASTDEALAAARVTASSTARGPAGWEGDGVAVMDTGSYLEFLPPPEAQACGEADTTSGKNHRTGVVIFPGALVPPSAYAPLARTMARKGYPSYILRFEFNLATKGWEATSEIISRSAPAADGEGRGASCSAVGSRPTKWVLAGHSMGTVGIEMFYAEHPEIVDGVVYMG--SGNMIGDALKGSEVPAMVLRGSRDPFVPAEVQTARKKSVL 293          
BLAST of mRNA_H-paniculata_contig23414.6323.1 vs. uniprot
Match: A0A089ZCV1_METFO (Carboxymethylenebutenolidase-like protein n=5 Tax=Methanobacterium TaxID=2160 RepID=A0A089ZCV1_METFO)

HSP 1 Score: 113 bits (282), Expect = 1.980e-24
Identity = 74/254 (29.13%), Postives = 117/254 (46.06%), Query Frame = 3
Query:  828 LGKPSFFRYASDFTEFLWTTLILRSTPASEAAIEASKNPATRGSGDGIVVKLTDDYVEFQLPSGGPTKRKDLVGVIIIPGGQISPFAYSPLARALARKGYASFILRLPFNLAYYGWDTAGVIIKRPQTEDDPPAPNKWVLIGHSLGG-----FTNARPDCVNGVVYMGCSSGGLKADLGLPMLYIFGSRDPFTLGAVSQMGSKEVMKDAEVFIVKGGNHRGFASYDKQPLDWEATIDESEQRRIVVEVLTEFIE 1574
            +G   F  Y SD+             PA   A+      A   S +   V  T D++ F      P   K+  G+II PGG++   +YS +A  LA  GY + I+R+PFNLA++G + A  +I      D+ P  + WV++GHSLGG     +    P+ + GV+Y+        ++     L + GSRD  T          +  K+     ++GGNH  F +Y  Q  D  +TI   EQ+   ++ + EF++
Sbjct:   21 IGAAGFIYYVSDYY------------PADSYAL------AALNSAESYTVSNTPDFITFT-----PNTPKNSTGIIIYPGGKVQAESYSIIASKLAENGYITVIVRMPFNLAFFGSEKANTVI------DNHPEISSWVMMGHSLGGVFASDYAVNHPEKIRGVIYLASYPSANASNATFKALSLRGSRDNLTQPEDISKNLDKFPKNTLFTTIEGGNHYNFGNYGTQSGDNNSTISREEQQNQTLKAILEFLK 245          
BLAST of mRNA_H-paniculata_contig23414.6323.1 vs. uniprot
Match: UPI001AEB9998 (alpha/beta hydrolase n=1 Tax=Methanobacterium aggregans TaxID=1615586 RepID=UPI001AEB9998)

HSP 1 Score: 110 bits (274), Expect = 2.300e-23
Identity = 71/227 (31.28%), Postives = 104/227 (45.81%), Query Frame = 3
Query:  909 ASEAAIEASKNPATRGSGDGIVVKLTDDYVEFQLPSGGPTKRKDLVGVIIIPGGQISPFAYSPLARALARKGYASFILRLPFNLAYYGWDTAGVIIKRPQTEDDPPAPNKWVLIGHSLGG-----FTNARPDCVNGVVYMGCSSGGLKADLGLPMLYIFGSRDPFTLGAVSQMGSKEVMKDAEVFIVKGGNHRGFASYDKQPLDWEATIDESEQRRIVVEVLTEFIE 1574
            A   A+ A K+  T    D      + DY+ F      PT  K   G+II PG +I   AYS +A  LA+KGY + I+++PFNLA++G D AG +I +    D+      WV+ GHSLGG     +     D + GV+Y+        ++     L I GS D             +   +     + GGNH  F  Y  Q  D  +TI   +Q+ I V+ +  F+E
Sbjct:   36 ADSKALTALKSTETYSVSD------SSDYITFT-----PTTNKSTTGIIIYPGAKIQAEAYSVMASKLAQKGYTTIIVKMPFNLAFFGSDKAGAVIAKHGEIDE------WVIGGHSLGGVFASEYAMKHQDKIRGVIYLAAYPSTNASNATFKALSIRGSLDGLATAEDISKNLDKFPANTTFITIPGGNHYNFGDYGVQAGDNNSTITREKQQDITVDYIVRFVE 245          
BLAST of mRNA_H-paniculata_contig23414.6323.1 vs. uniprot
Match: U6EBF3_9EURY (Carboxymethylenebutenolidase-like protein n=1 Tax=Methanobacterium sp. MB1 TaxID=1379702 RepID=U6EBF3_9EURY)

HSP 1 Score: 109 bits (272), Expect = 4.240e-23
Identity = 67/227 (29.52%), Postives = 113/227 (49.78%), Query Frame = 3
Query:  909 ASEAAIEASKNPATRGSGDGIVVKLTDDYVEFQLPSGGPTKRKDLVGVIIIPGGQISPFAYSPLARALARKGYASFILRLPFNLAYYGWDTAGVIIKRPQTEDDPPAPNKWVLIGHSLGG-----FTNARPDCVNGVVYMGCSSGGLKADLGLPMLYIFGSRDPFTLGAVSQMGSKEVMKDAEVFIVKGGNHRGFASYDKQPLDWEATIDESEQRRIVVEVLTEFIE 1574
            A+  A++A K      S +   V  TDD++ F      PT   +  G+II P G++   +YS ++  LA KGY + I+++PFNLA++G + A  +I       + P  + WV++GHSLGG     +  + P+ + GV+Y+        ++     L + GS D FT          +  K+     ++GGNH  F +Y  Q  D  +TI   EQ+   ++ + EF++
Sbjct:   36 ATNDALDALK------STESYKVSDTDDFITFT-----PTTTNNSTGIIIYPAGKVQAESYSIISSKLAEKGYITVIVKMPFNLAFFGTERASTVIS------NHPEISSWVMMGHSLGGVFASDYAMSHPEKIKGVIYLASYPSVNASNATFKALSLRGSLDNFTQDEDISKNLDKYPKNTLFITIEGGNHYNFGNYGVQSGDNNSTISREEQQNQTLKAILEFLK 245          
BLAST of mRNA_H-paniculata_contig23414.6323.1 vs. uniprot
Match: UPI000AACA427 (alpha/beta hydrolase n=1 Tax=Methanobacterium formicicum TaxID=2162 RepID=UPI000AACA427)

HSP 1 Score: 107 bits (266), Expect = 7.660e-23
Identity = 62/202 (30.69%), Postives = 101/202 (50.00%), Query Frame = 3
Query:  984 TDDYVEFQLPSGGPTKRKDLVGVIIIPGGQISPFAYSPLARALARKGYASFILRLPFNLAYYGWDTAGVIIKRPQTEDDPPAPNKWVLIGHSLGG-----FTNARPDCVNGVVYMGCSSGGLKADLGLPMLYIFGSRDPFTLGAVSQMGSKEVMKDAEVFIVKGGNHRGFASYDKQPLDWEATIDESEQRRIVVEVLTEFIE 1574
            T D++ F      P   K+  G+II PGG++   +YS +A  LA  GY + I+R+PFNLA++G + A  +I       + P  + WV++GHSLGG     +    P+ + GV+Y+        ++     L + GSRD  T          +  K+     ++GGNH  F +Y  Q  D  +TI   EQ+   ++ + EF++
Sbjct:    4 TPDFITFT-----PNTPKNSTGIIIYPGGKVQAESYSIIASKLAENGYITVIVRMPFNLAFFGSEKANTVIA------NHPEISSWVMVGHSLGGVFASDYAVNHPEKIRGVIYLASYPSANASNATFKALSLRGSRDNLTQPEDISKNLDKFPKNTLFTTIEGGNHYNFGNYGTQSGDNNSTITREEQQNQTLKAILEFLK 194          
BLAST of mRNA_H-paniculata_contig23414.6323.1 vs. uniprot
Match: A0A2H4VMB8_9EURY (Alpha/beta hydrolase n=5 Tax=Methanobacteriales TaxID=2158 RepID=A0A2H4VMB8_9EURY)

HSP 1 Score: 108 bits (270), Expect = 7.820e-23
Identity = 65/211 (30.81%), Postives = 103/211 (48.82%), Query Frame = 3
Query:  957 SGDGIVVKLTDDYVEFQLPSGGPTKRKDLVGVIIIPGGQISPFAYSPLARALARKGYASFILRLPFNLAYYGWDTAGVIIKRPQTEDDPPAPNKWVLIGHSLGG-----FTNARPDCVNGVVYMGCSSGGLKADLGLPMLYIFGSRDPFTLGAVSQMGSKEVMKDAEVFIVKGGNHRGFASYDKQPLDWEATIDESEQRRIVVEVLTEFIE 1574
            S D  +V+ T D++ F      P   +   GVII PG ++   +YS +A  LA  GY + I+++PFNLA++G + A  +IK  Q        + WV+ GHSLGG     +    PD +NGV+Y+        ++     L I GS D FTL         +   +     ++GGNH  +  Y  Q  D  +TI   EQ+   ++ + +F++
Sbjct:   46 STDTYIVQNTVDFITFT-----PNSNQSTTGVIIYPGAKVQAESYSVIASQLANNGYTTIIVKMPFNLAFFGTNKADDVIKNYQEI------SSWVIGGHSLGGVFASDYAVNNPDKINGVIYLAAYPSSNASNATFKALSIRGSLDGFTLSEDISANLGKFPVNTTFITIEGGNHYNYGDYGIQAGDNNSTITREEQQNQTIKAILQFLK 245          
BLAST of mRNA_H-paniculata_contig23414.6323.1 vs. uniprot
Match: UPI00064FA2BA (carboxymethylenebutenolidase n=1 Tax=Methanobacterium TaxID=2160 RepID=UPI00064FA2BA)

HSP 1 Score: 107 bits (268), Expect = 1.440e-22
Identity = 76/221 (34.39%), Postives = 109/221 (49.32%), Query Frame = 3
Query:  933 SKNPATRGSGDGIVVKLTDDYVEFQLPSGGPTKRKDLVGVIIIPGGQISPFAYSPLARALARKGYASFILRLPFNLAYYGWDTAG-VIIKRPQTEDDPPAPNKWVLIGHSLGG-----FTNARPDCVNGVVYMGCSSGGLKADLGLPMLYIFGSRDPFTLGAVSQMGSKEVMKDAEVFI-VKGGNHRGFASYDKQPLDWEATIDESEQRRIVVEVLTEFIE 1574
            SK  A   S D   V  TD+ + F      PT+ +   G+I  PGG++ P AYS +A  LA KGY + I+++PFNLA++G + A  VI K P+        N W+++GHSLGG     +     D + GVVY+        ++     L I GS D  T  A     +K       VFI + GGNH    +Y  Q  D  +TI   EQ+  +V  + EF++
Sbjct:   38 SKAEAALKSTDVYNVTDTDNSITFT-----PTQNRSTTGIIFYPGGKVQPEAYSVIASKLAAKGYTTIIVKMPFNLAFFGVNGADDVIAKHPEI-------NSWIIMGHSLGGVFASEYAVNHQDKIKGVVYLAAYPSTNASNATFKALSIRGSLDNLTT-AQDISNNKNKFPANTVFITIPGGNHYNNGNYGPQAGDNNSTITREEQQNKIVGHILEFLK 245          
BLAST of mRNA_H-paniculata_contig23414.6323.1 vs. uniprot
Match: A0A1D3L0M8_9EURY (Carboxymethylenebutenolidase-related protein n=1 Tax=Methanobacterium congolense TaxID=118062 RepID=A0A1D3L0M8_9EURY)

HSP 1 Score: 107 bits (267), Expect = 1.960e-22
Identity = 68/211 (32.23%), Postives = 102/211 (48.34%), Query Frame = 3
Query:  957 SGDGIVVKLTDDYVEFQLPSGGPTKRKDLVGVIIIPGGQISPFAYSPLARALARKGYASFILRLPFNLAYYGWDTAGVIIKRPQTEDDPPAPNKWVLIGHSLGG-----FTNARPDCVNGVVYMGCSSGGLKADLGLPMLYIFGSRDPFTLGAVSQMGSKEVMKDAEVFIVKGGNHRGFASYDKQPLDWEATIDESEQRRIVVEVLTEFIE 1574
            S D  +V  T D++ F      PT  K   G+II PG ++   AYS LA  LA+ GY + I+++PFNLA++G D A  +I +  TE      NKWV+ GHSLGG     +     D ++GV+Y+        ++     L I GS D  T          +   +     + GGNH  F  Y  Q  D  +TI   +Q+ + V+ +  F++
Sbjct:   46 STDTYIVSDTADFITFT-----PTTNKSTTGIIIYPGAKVQAEAYSVLASKLAQNGYTTIIVKMPFNLAFFGTDKADEVIAQ-HTEI-----NKWVIGGHSLGGVFASEYALKNQDKISGVIYLAAYPSTNASNATFKALSIRGSLDGLTTVEDISKNLDKFPANTTFITLHGGNHYNFGDYGVQAGDNNSTITREKQQNLTVDYIVRFVK 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23414.6323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW29_ECTSI1.610e-9357.91Abhydrolase_5 domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JK92_9PHAE1.390e-5440.14Abhydrolase_5 domain-containing protein n=1 Tax=Ec... [more]
D7FXM1_ECTSI9.290e-3136.48Abhydrolase_5 domain-containing protein n=1 Tax=Ec... [more]
A0A089ZCV1_METFO1.980e-2429.13Carboxymethylenebutenolidase-like protein n=5 Tax=... [more]
UPI001AEB99982.300e-2331.28alpha/beta hydrolase n=1 Tax=Methanobacterium aggr... [more]
U6EBF3_9EURY4.240e-2329.52Carboxymethylenebutenolidase-like protein n=1 Tax=... [more]
UPI000AACA4277.660e-2330.69alpha/beta hydrolase n=1 Tax=Methanobacterium form... [more]
A0A2H4VMB8_9EURY7.820e-2330.81Alpha/beta hydrolase n=5 Tax=Methanobacteriales Ta... [more]
UPI00064FA2BA1.440e-2234.39carboxymethylenebutenolidase n=1 Tax=Methanobacter... [more]
A0A1D3L0M8_9EURY1.960e-2232.23Carboxymethylenebutenolidase-related protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23414contigH-paniculata_contig23414:2..3981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue8.3e-18
Seed eggNOG ortholog2880.D7FW29
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Alpha/beta hydrolase family
EggNOG OGs2EWUG@1,2SYKF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size2141
Cds size285
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929664.68681-UTR-H-paniculata_contig23414:1..9751622929664.68681-UTR-H-paniculata_contig23414:1..975Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23414 2..975 +
1691480957.5853922-UTR-H-paniculata_contig23414:1..9751691480957.5853922-UTR-H-paniculata_contig23414:1..975Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23414 2..975 +
1622929664.700556-UTR-H-paniculata_contig23414:1372..14471622929664.700556-UTR-H-paniculata_contig23414:1372..1447Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23414 1373..1447 +
1691480957.5978358-UTR-H-paniculata_contig23414:1372..14471691480957.5978358-UTR-H-paniculata_contig23414:1372..1447Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23414 1373..1447 +
1622929664.7152367-UTR-H-paniculata_contig23414:1639..17511622929664.7152367-UTR-H-paniculata_contig23414:1639..1751Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23414 1640..1751 +
1691480957.605218-UTR-H-paniculata_contig23414:1639..17511691480957.605218-UTR-H-paniculata_contig23414:1639..1751Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23414 1640..1751 +
1622929664.7264264-UTR-H-paniculata_contig23414:2009..21161622929664.7264264-UTR-H-paniculata_contig23414:2009..2116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23414 2010..2116 +
1691480957.6127315-UTR-H-paniculata_contig23414:2009..21161691480957.6127315-UTR-H-paniculata_contig23414:2009..2116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23414 2010..2116 +
1622929664.7386491-UTR-H-paniculata_contig23414:2443..24851622929664.7386491-UTR-H-paniculata_contig23414:2443..2485Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23414 2444..2485 +
1691480957.6202512-UTR-H-paniculata_contig23414:2443..24851691480957.6202512-UTR-H-paniculata_contig23414:2443..2485Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23414 2444..2485 +
1622929664.8474085-UTR-H-paniculata_contig23414:3435..39811622929664.8474085-UTR-H-paniculata_contig23414:3435..3981Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23414 3436..3981 +
1691480957.649685-UTR-H-paniculata_contig23414:3435..39811691480957.649685-UTR-H-paniculata_contig23414:3435..3981Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23414 3436..3981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929664.7554824-CDS-H-paniculata_contig23414:2485..25931622929664.7554824-CDS-H-paniculata_contig23414:2485..2593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23414 2486..2593 +
1691480957.6280062-CDS-H-paniculata_contig23414:2485..25931691480957.6280062-CDS-H-paniculata_contig23414:2485..2593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23414 2486..2593 +
1622929664.7738204-CDS-H-paniculata_contig23414:2798..28911622929664.7738204-CDS-H-paniculata_contig23414:2798..2891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23414 2799..2891 +
1691480957.6352165-CDS-H-paniculata_contig23414:2798..28911691480957.6352165-CDS-H-paniculata_contig23414:2798..2891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23414 2799..2891 +
1622929664.7890086-CDS-H-paniculata_contig23414:3351..34351622929664.7890086-CDS-H-paniculata_contig23414:3351..3435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23414 3352..3435 +
1691480957.64241-CDS-H-paniculata_contig23414:3351..34351691480957.64241-CDS-H-paniculata_contig23414:3351..3435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23414 3352..3435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23414.6323.1prot_H-paniculata_contig23414.6323.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23414 2486..3435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23414.6323.1

>prot_H-paniculata_contig23414.6323.1 ID=prot_H-paniculata_contig23414.6323.1|Name=mRNA_H-paniculata_contig23414.6323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MGCSSGGLKADLGLPMLYIFGSRDPFTLGAVSQMGSKEVMKDAEVFIVKG
GNHRGFASYDKQPLDWEATIDESEQRRIVVEVLTEFIERRIVSQ*
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mRNA from alignment at H-paniculata_contig23414:2..3981+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23414.6323.1 ID=mRNA_H-paniculata_contig23414.6323.1|Name=mRNA_H-paniculata_contig23414.6323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3980bp|location=Sequence derived from alignment at H-paniculata_contig23414:2..3981+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGCCGTTTTCATCCTCAATTATAAATCGATCCTCAATTAGGAGGATCG ACTGTTATTTATTGTTAGCCCAGATCAGCAGTCAGTAGCACATAAAGGGC AAAAATACTCATCTGTACAACGATACGTCGGGAATACACGAGCAGATTAT ATTCCCAAGTGTATCACACACGAAGTCACGTGTTCGTTTTGTGTTGCGCG ATGTTGTTTATAGGTAGGTGTGAAGATTAAAGCCCTGTGCGGTACTTGGG GTTTAGTCACGTCTGCCGAATATGTAGCATTTGGTTACCTGCGATGCCCA TAACCTCATAGCAGACTCCGGTTGGCGTAGCAACGCAAGGATGGTGACTA GCGGCTAGTGTCACCCTTGTGGAAGTAGCCTGTCCGGCGAAGATCCCGCA TGCTCCATCCTCGCATTGTGGGGATGCGAGGTCAATAGTCGAGAAATTAC CGAGTGCATTTTCATGAGTACACAAACGCTACCGACTGCATCCTTTGCTC TTTTCACTAAATACCCCATCAGAGCTGTCCCATAGGCCATAAGCCATCAG CAATACGTGGAGCCTGGAATTGGGCGGAATTTGAATTGTTCCGAAAATGA ATACCACCCAATTTGGAATATCTCGGACTGTCGGGCGTATTTCATTTGGA TTATGCTGCATATGCCATCCACTTTTTTGCTGTATAGCACACGTGCTGCA ATATCAGGCGCGACAGCAACCACGCCAACTGCGTACCCCTCGCGCGCGGT AATAACTGATCACGGCCAAGTGGCTAGCCAAGGAATGGATATCCAGCTGC AGGGGCATAGGTTGGTTTTCCGATCCGCTGGGCAAACCGAGTTTCTTCCG TTACGCGAGCGACTTCACGGAGTTCCTATGGACCACCCTAATTTTGAGGT CGACGCCAGCATCAGAAGCGGCAATTGAGGCGTCCAAGAACCCTGCCACT AGAGGCTCGGGCGACGGGATTGTGGTATGAGAAGGGATCAAACATATAAT TATATGCGTTGCCTACCCCTTCGTTGCCGTCAGATCAAGCGCACGCAGTT GCCTGTCTAATATGGAAGCTAAGCTGTTGGTTGATGGCTTTCCCTAGCGC GTCCTCATTTTGAGAGTCGGAAATAAGGAGATACTTTGACCATAGGCGAG GCTGCTTCACATCATCTGTCGTTAGTTGTGCATTGTACACAGCTACGCAG GGACTCGCCAATGTTCCTCCTTCGTGTAACCGCCCCCAGTGAAAGGTCCA AGGCGCACAATAGCCCAGATATTAGTACAACTGCTTTTGCGTACCATGTA CGGACGGGGTCGGGCTCGAGGGTACCAATTCACTCGGCATTTCGCATTGC CGATGTAAACTTATTCTGCAGGTGAAGTTGACGGATGACTACGTTGAGTT TCAGCTCCCCAGTGGCGGTCCTACGAAGAGGAAAGATCTCGTCGGGGTGA GTGTTCTCAGCAAGTTGGACCGCCAGAAGCCGCTTCAGTGTTCTTCGAGA CAGGTCTAATGATGATATTTTATGCACTACGAAGATAGGAGACCATATAA TGACGGAGGTCAGAGGGTAATGCGTGTCCGGCGTAGTCCATTTCATCGGA GTTGTCCCGTGCGTTTGTGGCGTGCGAAATGGTTGTAGGTGATTATCATT CCAGGGGGCCAGATTTCTCCCTTCGCGTACTCCCCTCTGGCCCGCGCGCT CGCGCGAAAGGGGTATGCCTCTTTCATCCTGCGTCTTCCATTCAACCTAG GTGAGCTATTCATGTACTTTCGCACAGTTGCTAAACACTGATTACCCTAA CGTTTTCAGCAGGGAGATATTTTAACTCCCAGAGACTGTTACCCGCAGAA ATACCACTGCCCTACCTTTCAGCTGATTTTCGTGTAAATGCCGCTCATGT GCTTCCGTCGCACATTAATGCCGTTGGTGAAAAGTCTTGAGCGAAAACGT GATTTTCTTGAGCGTTAATGCCTTCGACATTATATCTCTGTGTTGCCGTG ACTTGAAGCGTACTATGGATGGGACACTGCCGGAGTGATCATCAAGCGAC CACAGACAGAAGACGACCCGCCAGCGCCCAACAAGTGGGTCTTGATCGGG CACTCACTAGGCGGGGTCGGACTCAATCAGGCAAGATGACTACCGAGCGG CGAAATGGTTACCAAAACGTCGCTTCTGATTGGCTGCCATCAAGATTCAG ATGCCAACCAGACAATGTCAACTCGTTTTTGCTCACCAGCAACTGGTGTC AAGGTCCACAGTTGAATCCAAGAGGTGTCTACATCACGTTGGTGTGAGAT GGAAAACAATGCAAGTCGTCCAGCGTTGCGTGCGTGAGGACACAGGCCAC ATTCAAGCAGCCTTCACCGTATGCACGTGTTCTAATAACAACAAATTAAA TGTTGTACATGTTTTCCGGCTGATACTTCTCCACCTTCTCAGTTCACCAA TGCCAGACCTGACTGCGTTAACGGCGTGGTATACATGGGATGCTCATCCG GAGGATTGAAGGCAGATCTGGGATTACCTATGCTCTACATCTTTGGCTCT CGTGACCCATTTACCCTAGGAGCGGTGAGTCAAATGGGTAGTGTATAAAA ATACTGTTTTCAAGTATAAATAACTGCACATAAGGTAAATAAATAACTGC ACATAAAATGCGATATATCAAACATGCAGCTGTAGCAGTTGGCACACTCC AACGTAGTCTCGGCATATTTTCTTGCGCCGGATGCAATGCACTAATCTTG TCTCTGTCATGCTGCATTTTCCACGCCTCGTGAATACATGAATAAAGAAA GAAGTGATGAAAGACGCCGAAGTGTTCATCGTGAAAGGAGGTAATCACCG AGGCTTCGCGTCGTACGACAAGCAGCCATTGGATTGGGAGGTGAGCAGGG TGGTCCATGATTAGCGTCCAAGTCAGACCGACACATATGCTGCCTCGGAC GCTTGTCGTCTATCACGCAGCAAAAAGGTCTCTACGCGATCATCAGTATC TCAAATATTGATATGCCGTGATTAACTGTTATACCTACCAATACATTGAC CGTGACGGCGACTGTTCGGAATCTCGCCGCAGACAAGATGATGTCATGTA ATTCATTGTAACGTACTCATGCTACCGCGTCTACCGCTCACCTGCACATA TGTGAAGGTCAGGATTGTACTAGCCGAACCTCAGGAGGTTGACAGGACCG CTGGATCGTATCGTCCACTGGCGTGCGTTTTCTTCTGTTTGGCATTAAAA TCCGCAGTATGGTTATTTACAGCGTTTTACGGACACATTTTTGCTTCTAG GCAATTTGGCTCACTCGCTGACCCCACCCTACTCATGTTTTCTATCGCAG GCGACAATTGACGAGTCCGAGCAGCGCCGGATTGTTGTAGAAGTCTTGAC CGAATTCATCGAGCGCCGGATTGTTTCGCAGTAGTCGGCGTGTTGCGTTT GGCAGCTGTCTCCCTTTCATTGGCGTCTGTGAGGTTGACTCTGTCTTTTT GTTTGTTCACCCACTACTGCACTGGGTACCGCCAAGTAGACATTGTACCA TTCACTCCGTCTTTACATCTGTGTTGTCGTTCAGGCAGATGATCTTGGAG TAAGATATAAAGTATTTGTATAAATATATAGATGGGTGGGATTGGCGAAT GTATATCCTTTGAACTGTAGGCCTCTCCCAAGAGCACATCCGCGGCAGCG ATGTTTTATAGTCGTCATACTCGGTGCATATACATGGTGCCATGTTCTCT ATGAGCATAGTGTGGGTCCGTCGCAGTTGGCGACTTCGACCAACCGGCTA AAGTCGCTGATTCATTTCTAGTTTATGCACAGGACCCGCCCGGTGATGAG AAACGTTTTTGTAGCGAGTGTCATGAGCAGTACCATATATACCAGTGTTG CTTTTTTCAGAGCCTGTTGCCACCTCACCCCCCTACGGTACTGCAGCCTA CAGCACAGCTGCTGGATATTGTATTACTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig23414:2..3981+

>mRNA_H-paniculata_contig23414.6323.1 ID=mRNA_H-paniculata_contig23414.6323.1|Name=mRNA_H-paniculata_contig23414.6323.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig23414:2..3981+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGATGCTCATCCGGAGGATTGAAGGCAGATCTGGGATTACCTATGCT
CTACATCTTTGGCTCTCGTGACCCATTTACCCTAGGAGCGGTGAGTCAAA
TGGGTAGTATGGGATGCTCATCCGGAGGATTGAAGGCAGATCTGGGATTA
CCTATGCTCTACATCTTTGGCTCTCGTGACCCATTTACCCTAGGAGCGGT
GAGTCAAATGGGTAGTAAAGAAGTGATGAAAGACGCCGAAGTGTTCATCG
TGAAAGGAGGTAATCACCGAGGCTTCGCGTCGTACGACAAGCAGCCATTG
GATTGGGAGAAAGAAGTGATGAAAGACGCCGAAGTGTTCATCGTGAAAGG
AGGTAATCACCGAGGCTTCGCGTCGTACGACAAGCAGCCATTGGATTGGG
AGGCGACAATTGACGAGTCCGAGCAGCGCCGGATTGTTGTAGAAGTCTTG
ACCGAATTCATCGAGCGCCGGATTGTTTCGCAGTAGGCGACAATTGACGA
GTCCGAGCAGCGCCGGATTGTTGTAGAAGTCTTGACCGAATTCATCGAGC
GCCGGATTGTTTCGCAGTAG
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