mRNA_H-paniculata_contig234.6317.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig234.6317.1
Unique NamemRNA_H-paniculata_contig234.6317.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig234.6317.1 vs. uniprot
Match: D8LCR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR0_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 6.320e-6
Identity = 34/78 (43.59%), Postives = 40/78 (51.28%), Query Frame = 1 
Query:   40 PSVDQESKGVAASQIVEAQGRIRPSRPCPNTRSAGNSNTASGGGLTREESRLLIRAELKRAGVSDKINRWNNAGQCWE 273
            PS       V A Q    + R   S P           +  GGGL+REE+RLLIRAELKRAG+SDKI R   + Q  E
Sbjct:  555 PSTSHSQGAVGAVQYGSGKERGADSLP-----------SRGGGGLSREEARLLIRAELKRAGISDKITREEASVQAEE 621
[Close]
BLAST of mRNA_H-paniculata_contig234.6317.1 vs. uniprot
Match: A0A6H5KUP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP0_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 1.610e-5
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:  163 GGGLTREESRLLIRAELKRAGVSDKINR 246
            GGGL+REE+RLLIRAELKRAG+SDKI R
Sbjct:  549 GGGLSREETRLLIRAELKRAGISDKITR 576
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig234.6317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCR0_ECTSI6.320e-643.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUP0_9PHAE1.610e-585.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig234contigH-paniculata_contig234:28064..29169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size278
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929663.3560436-CDS-H-paniculata_contig234:28063..281921622929663.3560436-CDS-H-paniculata_contig234:28063..28192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig234 28064..28192 +
1691480956.9848058-CDS-H-paniculata_contig234:28063..281921691480956.9848058-CDS-H-paniculata_contig234:28063..28192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig234 28064..28192 +
1622929663.3837965-CDS-H-paniculata_contig234:29022..291691622929663.3837965-CDS-H-paniculata_contig234:29022..29169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig234 29023..29169 +
1691480956.9928064-CDS-H-paniculata_contig234:29022..291691691480956.9928064-CDS-H-paniculata_contig234:29022..29169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig234 29023..29169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig234.6317.1prot_H-paniculata_contig234.6317.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig234 28064..29169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig234.6317.1

>prot_H-paniculata_contig234.6317.1 ID=prot_H-paniculata_contig234.6317.1|Name=mRNA_H-paniculata_contig234.6317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
IGTRQRRTPKNADPSVDQESKGVAASQIVEAQGRIRPSRPCPNTRSAGNS
NTASGGGLTREESRLLIRAELKRAGVSDKINRWNNAGQCWE*
back to top

mRNA from alignment at H-paniculata_contig234:28064..29169+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig234.6317.1 ID=mRNA_H-paniculata_contig234.6317.1|Name=mRNA_H-paniculata_contig234.6317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1106bp|location=Sequence derived from alignment at H-paniculata_contig234:28064..29169+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGGCACAAGGCAAAGGAGAACACCGAAAAATGCAGACCCGTCGGTTGA
CCAAGAGTCGAAGGGTGTTGCAGCATCGCAAATCGTGGAAGCGCAAGGGC
GAATTCGCCCAAGTCGACCTTGCCCGAACGTTAGTATTTTTTTTCGTGCT
TTGGGGATGGGTCAGAAATGAAGTCGAGGGCAGAGGGGCTGGGGGCTGGT
ACTCGAAATTTCTGATTTACTAAGGATCCTTTTGAGATGTACGTCAAGAT
TTGTTTTCAACACTTGTGTGTGCACGCACAGCACGAGTCGAGCCGATCAC
AAATTTAGTAGCTTGAATGCGCTTGTAGTTGACAGAGCGCAGGAATAAAT
AAGCATGAACGCATTCTAACTAGGTACGTTTTGAAACTTGTGTACTCCGA
TAGACTTATCCTAGTATACAGCGAGTTGGCCACTCTTGCGCATGGGTACA
CCGATGTTGCACGTTCGAAAGCAGCTGTTTGGCATGGAAGCAAACAACTG
TCTCCTCGTACTTATGGGCCAAAACGAGAAAAACAACGAATCGAAGTGAC
AATGGGCGTGAGGTCAGGAGGTATTGGGTCTTGGCTCGCTCCACAATGTT
TGGTGGTTTTGCCCGTTGTCCCCCTCCCCACACACTACTCTGCAGCTACG
CTTCTACGCGCAATACACAAAACACTATATGCGTATTCCCGTCGCAAGCC
CTCTTATCATGGCCAGATCAAGTAGGCTAGACCAGATCGAGTAGATATTT
TTGTGCCTTTCGTATGCGAAAAAAATATCTGCTTCGTGATTTCATCTTCG
TATACCACAGCAACAAGTCTCGAATGATAGGTGGCGCTGCGGGCAAGTGT
ACGGTACCATATATACTATGTTCCCAAATTAGTACCTATAACGCGTGTGG
TGTGTTTTTTTGCTGCTATATTTTGAATCACTCTCCCCTCCCCTCCCCCC
GCCTCTCAGACACGCTCTGCTGGCAACAGCAATACAGCGTCCGGAGGCGG
GCTGACTCGCGAGGAAAGCCGGCTGCTGATTAGAGCGGAGCTCAAGAGGG
CCGGGGTTTCAGACAAGATCAACAGGTGGAACAACGCGGGGCAATGCTGG
GAATAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig234:28064..29169+

>mRNA_H-paniculata_contig234.6317.1 ID=mRNA_H-paniculata_contig234.6317.1|Name=mRNA_H-paniculata_contig234.6317.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig234:28064..29169+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGGCACAAGGCAAAGGAGAACACCGAAAAATGCAGACCCGTCGGTTGA
CCAAGAGTCGAAGGGTGTTGCAGCATCGCAAATCGTGGAAGCGCAAGGGC
GAATTCGCCCAAGTCGACCTTGCCCGAACATAGGCACAAGGCAAAGGAGA
ACACCGAAAAATGCAGACCCGTCGGTTGACCAAGAGTCGAAGGGTGTTGC
AGCATCGCAAATCGTGGAAGCGCAAGGGCGAATTCGCCCAAGTCGACCTT
GCCCGAACACACGCTCTGCTGGCAACAGCAATACAGCGTCCGGAGGCGGG
CTGACTCGCGAGGAAAGCCGGCTGCTGATTAGAGCGGAGCTCAAGAGGGC
CGGGGTTTCAGACAAGATCAACAGGTGGAACAACGCGGGGCAATGCTGGG
AATAGACACGCTCTGCTGGCAACAGCAATACAGCGTCCGGAGGCGGGCTG
ACTCGCGAGGAAAGCCGGCTGCTGATTAGAGCGGAGCTCAAGAGGGCCGG
GGTTTCAGACAAGATCAACAGGTGGAACAACGCGGGGCAATGCTGGGAAT
AG
back to top