mRNA_H-paniculata_contig23275.6270.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23275.6270.1
Unique NamemRNA_H-paniculata_contig23275.6270.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23275.6270.1 vs. uniprot
Match: A0A6H5L2D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D8_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.970e-22
Identity = 60/89 (67.42%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    1 MTYSSSKASVVAAAAEAGAAVDHMVEIRAASEIDEAMAHAVQSAADQGGSGGDRAGILVGERAGTLSPATAVKRPSRPGRGRARLTKRS 267
            MTYSSSKASVVAAAAEAG  VDHMVEIRAA+EIDEA+AHAV+ + +       R G + GE      P  AV RPSRPGRGRARLTKRS
Sbjct:  171 MTYSSSKASVVAAAAEAGVTVDHMVEIRAANEIDEAVAHAVRGSKEHAAG---REGGVGGEGTTISPPVPAVARPSRPGRGRARLTKRS 256
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BLAST of mRNA_H-paniculata_contig23275.6270.1 vs. uniprot
Match: A0A835YYH4_9STRA (ADF-H domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYH4_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 6.600e-5
Identity = 38/89 (42.70%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:    1 MTYSSSKASVVAAAAEAGAAVDHMVEIRAASEIDEAMAHAVQSAADQGGSGGDRAGILVGERAGTLSPATAV---KRPSRPGRGRARLT 258
            MTYS+++ASVVAA A AG       E     EI+EA+A+ ++  AD             G  AG LS A       +PSRPGRGR RLT
Sbjct:  141 MTYSTARASVVAAVAAAGTDCSKSFECGGPEEIEEALAYELKGVAD-------------GANAGALSAAADAPLPSKPSRPGRGRGRLT 216
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BLAST of mRNA_H-paniculata_contig23275.6270.1 vs. uniprot
Match: A0A835YV51_9STRA (ADF-H domain-containing protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV51_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 8.940e-5
Identity = 38/89 (42.70%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:    1 MTYSSSKASVVAAAAEAGAAVDHMVEIRAASEIDEAMAHAVQSAADQGGSGGDRAGILVGERAGTLSPATAV---KRPSRPGRGRARLT 258
            MTYS+++ASVVAA A AG       E     EI+EA+A+ ++  AD             G  AG LS A       +PSRPGRGR RLT
Sbjct:  257 MTYSTARASVVAAVAAAGTDCSKSFECGGPEEIEEALAYELKGVAD-------------GANAGALSAAADAPLPSKPSRPGRGRGRLT 332
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23275.6270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L2D8_9PHAE3.970e-2267.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YYH4_9STRA6.600e-542.70ADF-H domain-containing protein n=1 Tax=Tribonema ... [more]
A0A835YV51_9STRA8.940e-542.70ADF-H domain-containing protein n=3 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23275contigH-paniculata_contig23275:1019..2754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_003330.1
Exons2
Model size270
Cds size270
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929658.5416193-CDS-H-paniculata_contig23275:1018..10901622929658.5416193-CDS-H-paniculata_contig23275:1018..1090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23275 1019..1090 +
1691480954.7577298-CDS-H-paniculata_contig23275:1018..10901691480954.7577298-CDS-H-paniculata_contig23275:1018..1090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23275 1019..1090 +
1622929658.5572205-CDS-H-paniculata_contig23275:2556..27541622929658.5572205-CDS-H-paniculata_contig23275:2556..2754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23275 2557..2754 +
1691480954.7691655-CDS-H-paniculata_contig23275:2556..27541691480954.7691655-CDS-H-paniculata_contig23275:2556..2754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23275 2557..2754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23275.6270.1prot_H-paniculata_contig23275.6270.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23275 1019..2754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23275.6270.1

>prot_H-paniculata_contig23275.6270.1 ID=prot_H-paniculata_contig23275.6270.1|Name=mRNA_H-paniculata_contig23275.6270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
MTYSSSKASVVAAAAEAGAAVDHMVEIRAASEIDEAMAHAVQSAADQGGS
GGDRAGILVGERAGTLSPATAVKRPSRPGRGRARLTKRS*
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mRNA from alignment at H-paniculata_contig23275:1019..2754+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23275.6270.1 ID=mRNA_H-paniculata_contig23275.6270.1|Name=mRNA_H-paniculata_contig23275.6270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1736bp|location=Sequence derived from alignment at H-paniculata_contig23275:1019..2754+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGTACTCTTCAAGCAAGGCCAGCGTTGTGGCAGCTGCAGCCGAGGC
TGGCGCTGCGGTCGATCACATGGTAAGTGCTTGTTTTTCCCCATGTTGGC
TGTGGGTTTTATCAAGAAGGTTGCCTTTGCTCATTCATGCCTATAATAGC
GCGCTCCGCCTCCTCACACTACTGTACCAGAATTAACATATGTTACAACA
CTAATAAAATAATATGATTTCTTGTCTGTTTGCTTGGAACTCACAACTCC
GCAGAGTGTACCAGTAATTTAGTTGTTCGAGGCACTATATTGCTGTAAGT
GAGTTGTGGGTTGTGACTGCTGGGTTTCTCTAGTGTTGAGTGAGTTGCAA
AAAGTAGACGCGCCCTGGTGTGCCTAGATGCCACAAAGTCATGTGTCGAA
GCCACGGGTTTCCGTTCACCTCTGTCATCCACTAGGGGAGGGGGCGGGGG
GGGACTTGTCGTCTCGGTCTCCTTGTTCATGGTTAAGGCCTTTCTCTTTT
GCTTTCATCATGTCTCAGAAGACCAATGAAGAAGAAAAATCTACTTCTGA
TACTTGTATACACTGGTCAGTAATCACGTGTCAGGTTTCGTACGCCGACC
CTATCGTGATTTTTCGGACCAATTTTTTTACGCATCCCATGTATCCGGAT
CTCCGCAGATCTAGATCCCGAAGAGGATTACTCGCAGCGTAGGCGCCTTT
GTGTCGTTATCCAACACACAGGCAGTGTAGTAGGACTCAGGGTCAACAAT
GAGACCCGTACCCACTTGAACCCTTCAGATGCCGGGCCACGTGAGACAGA
AAAAGTCTGCATGTTGACTTGACATCGATGTGAAGTAGTGGCGAAATAGT
GGTCTCGGTGATCTATGTTTTTAGCATGTGATCCGAGTACAAGTCCAAAC
GTTCATGGTTTGCCGAATCACGGGAGCAATTGTCGGCGATGCCACCTAAT
GTTTTTTGTTCTTCTCGCAGCATGTACTACAATACTTCATACTGTGGTGG
AAAACAATGAACAAATGTTCAACCTGGCACACATGCCAAACATTTTCAGT
AGACACTATCATGTGATGACCGCACTGCGACATCATTCGCGTTGTAGAGA
ATGACGTCCGTGGTTGTTCCGGCGGCTGCGTTGGTTACTGTGGTGTCTGC
GGCTCCTGCGACTGCGCCACCTTCAAGGCCGCTCTGGAGGTCACTCATCA
AACCGTCGTCTATCTCATCGCTGTGACCGCTATTGTTAGTCACGTTGAGT
ATCATGGCGTGGCGTAGTAGGACACTGTTTTAATCGTACCGGAGACTGTA
GCCAGCCCTTCACGAAAAATAGCGGAAAATGACTGGATACCTGGGTTAAT
TGTCAGCCCGTCCTCCAGTTTTATATCAGTAAACTGAAGCTGAAGTGGCG
CGTTAAATAGAGGTTCAACTCAACCAACACCCTCTCTGCTAGCGTAGCTC
CATCGTCGAATTGACGATGCCTTTAAAAGTCTGTCTTTTACCAAACAAAA
CGTACAGTTTACGCTTCTTATTGCCTCTTCCCTCTCAGGTGGAAATTCGT
GCCGCCAGCGAAATCGACGAGGCGATGGCTCATGCTGTGCAAAGCGCTGC
TGACCAGGGAGGTTCGGGAGGGGACAGGGCGGGCATTCTAGTCGGCGAAA
GGGCAGGAACGCTTTCCCCTGCTACCGCCGTCAAAAGGCCCAGCAGGCCA
GGACGCGGGCGGGCTAGACTAACTAAGCGATCTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig23275:1019..2754+

>mRNA_H-paniculata_contig23275.6270.1 ID=mRNA_H-paniculata_contig23275.6270.1|Name=mRNA_H-paniculata_contig23275.6270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig23275:1019..2754+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGTACTCTTCAAGCAAGGCCAGCGTTGTGGCAGCTGCAGCCGAGGC
TGGCGCTGCGGTCGATCACATGATGACGTACTCTTCAAGCAAGGCCAGCG
TTGTGGCAGCTGCAGCCGAGGCTGGCGCTGCGGTCGATCACATGGTGGAA
ATTCGTGCCGCCAGCGAAATCGACGAGGCGATGGCTCATGCTGTGCAAAG
CGCTGCTGACCAGGGAGGTTCGGGAGGGGACAGGGCGGGCATTCTAGTCG
GCGAAAGGGCAGGAACGCTTTCCCCTGCTACCGCCGTCAAAAGGCCCAGC
AGGCCAGGACGCGGGCGGGCTAGACTAACTAAGCGATCTTAGGTGGAAAT
TCGTGCCGCCAGCGAAATCGACGAGGCGATGGCTCATGCTGTGCAAAGCG
CTGCTGACCAGGGAGGTTCGGGAGGGGACAGGGCGGGCATTCTAGTCGGC
GAAAGGGCAGGAACGCTTTCCCCTGCTACCGCCGTCAAAAGGCCCAGCAG
GCCAGGACGCGGGCGGGCTAGACTAACTAAGCGATCTTAG
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