prot_H-paniculata_contig23275.6270.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig23275.6270.1
Unique Nameprot_H-paniculata_contig23275.6270.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length90
Homology
[Close]
BLAST of mRNA_H-paniculata_contig23275.6270.1 vs. uniprot
Match: A0A6H5L2D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D8_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.970e-22
Identity = 60/89 (67.42%), Postives = 66/89 (74.16%), Query Frame = 0 
Query:    1 MTYSSSKASVVAAAAEAGAAVDHMVEIRAASEIDEAMAHAVQSAADQGGSGGDRAGILVGERAGTLSPATAVKRPSRPGRGRARLTKRS 89
            MTYSSSKASVVAAAAEAG  VDHMVEIRAA+EIDEA+AHAV+ + +       R G + GE      P  AV RPSRPGRGRARLTKRS
Sbjct:  171 MTYSSSKASVVAAAAEAGVTVDHMVEIRAANEIDEAVAHAVRGSKEHAAG---REGGVGGEGTTISPPVPAVARPSRPGRGRARLTKRS 256
[Close]
BLAST of mRNA_H-paniculata_contig23275.6270.1 vs. uniprot
Match: A0A835YYH4_9STRA (ADF-H domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYH4_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 6.600e-5
Identity = 38/89 (42.70%), Postives = 47/89 (52.81%), Query Frame = 0 
Query:    1 MTYSSSKASVVAAAAEAGAAVDHMVEIRAASEIDEAMAHAVQSAADQGGSGGDRAGILVGERAGTLSPATAV---KRPSRPGRGRARLT 86
            MTYS+++ASVVAA A AG       E     EI+EA+A+ ++  AD             G  AG LS A       +PSRPGRGR RLT
Sbjct:  141 MTYSTARASVVAAVAAAGTDCSKSFECGGPEEIEEALAYELKGVAD-------------GANAGALSAAADAPLPSKPSRPGRGRGRLT 216
[Close]
BLAST of mRNA_H-paniculata_contig23275.6270.1 vs. uniprot
Match: A0A835YV51_9STRA (ADF-H domain-containing protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV51_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 8.940e-5
Identity = 38/89 (42.70%), Postives = 47/89 (52.81%), Query Frame = 0 
Query:    1 MTYSSSKASVVAAAAEAGAAVDHMVEIRAASEIDEAMAHAVQSAADQGGSGGDRAGILVGERAGTLSPATAV---KRPSRPGRGRARLT 86
            MTYS+++ASVVAA A AG       E     EI+EA+A+ ++  AD             G  AG LS A       +PSRPGRGR RLT
Sbjct:  257 MTYSTARASVVAAVAAAGTDCSKSFECGGPEEIEEALAYELKGVAD-------------GANAGALSAAADAPLPSKPSRPGRGRGRLT 332
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23275.6270.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L2D8_9PHAE3.970e-2267.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YYH4_9STRA6.600e-542.70ADF-H domain-containing protein n=1 Tax=Tribonema ... [more]
A0A835YV51_9STRA8.940e-542.70ADF-H domain-containing protein n=3 Tax=Tribonema ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..89
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..15

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23275contigH-paniculata_contig23275:1019..2754 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23275.6270.1mRNA_H-paniculata_contig23275.6270.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig23275 1019..2754 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig23275.6270.1 ID=prot_H-paniculata_contig23275.6270.1|Name=mRNA_H-paniculata_contig23275.6270.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
MTYSSSKASVVAAAAEAGAAVDHMVEIRAASEIDEAMAHAVQSAADQGGS
GGDRAGILVGERAGTLSPATAVKRPSRPGRGRARLTKRS*
back to top