prot_H-paniculata_contig2326.6265.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2326.6265.1
Unique Nameprot_H-paniculata_contig2326.6265.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1080
Homology
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BLAST of mRNA_H-paniculata_contig2326.6265.1 vs. uniprot
Match: UPI001FB68544 (mitochondrial E3 ubiquitin protein ligase 1-like n=4 Tax=Penaeus TaxID=133894 RepID=UPI001FB68544)

HSP 1 Score: 61.6 bits (148), Expect = 3.280e-6
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 0 
Query: 1032 CKVCFSGLANALLLPCSHLCVCSECALRLH--ACPVCRLDVQRVQTVYRS 1079
            C VC  GL + LL+PC H+CVCSECAL+L+   CPVCR D++R+Q V+ S
Sbjct:  288 CVVC-CGLRDVLLVPCRHVCVCSECALKLNPRVCPVCRTDIERIQPVFYS 336
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BLAST of mRNA_H-paniculata_contig2326.6265.1 vs. uniprot
Match: A0A8J5MQI6_HOMAM (RING-type E3 ubiquitin transferase n=2 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5MQI6_HOMAM)

HSP 1 Score: 60.5 bits (145), Expect = 6.240e-6
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 0 
Query: 1032 CKVCFSGLANALLLPCSHLCVCSECALRLH--ACPVCRLDVQRVQTVYRS 1079
            C VC  GL + LL+PC H+CVCS+CAL+L    CPVCR D++R+Q V+ S
Sbjct:  258 CVVC-CGLRDVLLMPCRHVCVCSDCALKLEPRVCPVCRTDIERIQPVFYS 306
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2326.6265.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001FB685443.280e-658.00mitochondrial E3 ubiquitin protein ligase 1-like n... [more]
A0A8J5MQI6_HOMAM6.240e-656.00RING-type E3 ubiquitin transferase n=2 Tax=Homarus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 1030..1073
e-value: 9.1E-11
score: 41.4
NoneNo IPR availablePANTHERPTHR14879:SF5E3 UBIQUITIN-PROTEIN LIGASE CBLAcoord: 1019..1078
NoneNo IPR availablePANTHERPTHR14879CASPASE REGULATOR, RING FINGER DOMAIN-CONTAININGcoord: 1019..1078
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 1031..1072
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1015..1079
e-value: 2.0E-14
score: 54.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 1032..1067
score: 11.398

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2326contigH-paniculata_contig2326:1327..15171 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2326.6265.1mRNA_H-paniculata_contig2326.6265.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2326 1270..15392 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2326.6265.1 ID=prot_H-paniculata_contig2326.6265.1|Name=mRNA_H-paniculata_contig2326.6265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1080bp
MQQQQLQHPDCFFNATRSSGIWEGLSFRHGCESIDDETRWSETSLVFSDT
TGQKHQRGSSGKLSPWQGVGGAAAEVQEPPGAIAVLTGKGMSQWRGRAIP
FEVRGYVTVKARQAGIAGLGGSKLLRITLIKRHLGAFSNVVQYEGVLSRE
GLTIQGSFADGTFRISQIHPVAHVVAKELTGAWEGESSCRRGGQSTTAWK
SVRLAFASLPPEDGRGWGMLVTGGGDSLWKDQRIPFCVTGRLSLPGLEIE
LEKQHVEGYHNRIAYFGRVLTGGGGGGGSGGGGSGVSAAAAAAALEDAAR
TIRLVGVYEHGDFVLRRNRPIAFDMDHGGGGSQSSSVLQACIDLFKRCSD
PSSSWGMSGVSRRSIPVLPTARSYSGSGGGVPPQVPVRLPPHHQQPFVVP
PTSSSSKHTDAMVNWQREGKNKNGASTSRLSWLQHHNNNRDKNTPSPAPT
GGSVAVVAATATATTAATAGSPATAAAVAPWGMKEPWENWVAGGTTASPL
PPPLPQPAHPLILRQGHFEKNSAFRSGLPRRPVDETAAAAAAAATATAEN
REFAGWAESSGNSNNHDKSHDDDFDFELTFGRPSVGTAATTTTTTTTAPS
SGAEIWMREIPPSLGESARFGSRVGAAAAAAAAAAVSVSSSGAARTAVGV
DTGCVSSSSGPGGSPVLVPGGGGVRTDADANPAISSLGYECERVDISAIT
ETAAAAREGGLHEFKGWMDMLDAVGNGSDGGGGVADPRAGAAGKSSTKSM
LGGSGGNGVSMRQAAVAMASGINEVGESEDPETRRTALRAKIDDVLGAAR
KEAAARRSAAVSDSSMAPEGNGSKIRGRHVAGGNGFLGAAARSTAISGSG
GDGVDFNLAIAAARDEERLSSAATDHQPAVEDRFTTTTAFLDQDNKRKIP
YVDDAKRFGASDSGTGELLATKVEVYARTLAGLVFGGDGDDGAVARTGGV
GEARAGSVEGLRVLRACLLDSSISDNIHLEVFKSAAKTSCASSSVAGGGG
GGGGGDNGGYGFSSVTAAAAADSRQRDAADACKVCFSGLANALLLPCSHL
CVCSECALRLHACPVCRLDVQRVQTVYRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING