mRNA_H-paniculata_contig2326.6265.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2326.6265.1 vs. uniprot
Match: UPI001FB68544 (mitochondrial E3 ubiquitin protein ligase 1-like n=4 Tax=Penaeus TaxID=133894 RepID=UPI001FB68544) HSP 1 Score: 61.2 bits (147), Expect = 4.830e-6 Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query: 3151 CKVCFSGLANALLLPCSHLCVCSECALRLH--ACPVCRLDVQRVQTVYRS 3294
C VC GL + LL+PC H+CVCSECAL+L+ CPVCR D++R+Q V+ S
Sbjct: 288 CVVC-CGLRDVLLVPCRHVCVCSECALKLNPRVCPVCRTDIERIQPVFYS 336
BLAST of mRNA_H-paniculata_contig2326.6265.1 vs. uniprot
Match: A0A8J5MQI6_HOMAM (RING-type E3 ubiquitin transferase n=2 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5MQI6_HOMAM) HSP 1 Score: 60.1 bits (144), Expect = 9.190e-6 Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query: 3151 CKVCFSGLANALLLPCSHLCVCSECALRLH--ACPVCRLDVQRVQTVYRS 3294
C VC GL + LL+PC H+CVCS+CAL+L CPVCR D++R+Q V+ S
Sbjct: 258 CVVC-CGLRDVLLMPCRHVCVCSDCALKLEPRVCPVCRTDIERIQPVFYS 306 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2326.6265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2326.6265.1 >prot_H-paniculata_contig2326.6265.1 ID=prot_H-paniculata_contig2326.6265.1|Name=mRNA_H-paniculata_contig2326.6265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1080bp MQQQQLQHPDCFFNATRSSGIWEGLSFRHGCESIDDETRWSETSLVFSDTback to top mRNA from alignment at H-paniculata_contig2326:1270..15392+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2326.6265.1 ID=mRNA_H-paniculata_contig2326.6265.1|Name=mRNA_H-paniculata_contig2326.6265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14123bp|location=Sequence derived from alignment at H-paniculata_contig2326:1270..15392+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2326:1270..15392+ >mRNA_H-paniculata_contig2326.6265.1 ID=mRNA_H-paniculata_contig2326.6265.1|Name=mRNA_H-paniculata_contig2326.6265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6480bp|location=Sequence derived from alignment at H-paniculata_contig2326:1270..15392+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |