mRNA_H-paniculata_contig23225.6256.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: D7FIJ3_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ3_ECTSI) HSP 1 Score: 127 bits (319), Expect = 3.390e-36 Identity = 64/89 (71.91%), Postives = 75/89 (84.27%), Query Frame = 1
Query: 22 FVVIAAALASTATATHVLTAQEKISAFNPEDFAFALGGPAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
FV+ A ++ST A+ V+TAQ++I+ FNPEDF F+LGGP D L+DGFQ R VNVNQLPAL+GQGISMALVNLD CAINLPHIHPRATE
Sbjct: 10 FVIAAGLMSSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 98
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: D7FI68_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI68_ECTSI) HSP 1 Score: 126 bits (317), Expect = 1.620e-35 Identity = 64/89 (71.91%), Postives = 74/89 (83.15%), Query Frame = 1
Query: 22 FVVIAAALASTATATHVLTAQEKISAFNPEDFAFALGGPAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
FV+ A + ST A+ V+TAQ++I+ FNPEDF F+LGGP D L+DGFQ R VNVNQLPAL+GQGISMALVNLD CAINLPHIHPRATE
Sbjct: 10 FVIAAGLMPSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 98
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: D8LDW6_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW6_ECTSI) HSP 1 Score: 116 bits (290), Expect = 2.330e-30 Identity = 63/99 (63.64%), Postives = 75/99 (75.76%), Query Frame = 1
Query: 1 MKTSSTS---FVVIAAALASTATATHVLTAQEKISAFNPEDFAFALGGPAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
MKTS S VV A ++STA A+ V+TAQ++I+ FNPEDF F LGGP D +DGFQ R + Q+PAL+GQGI+MALVNLDAC INLPHIHPRATE
Sbjct: 1 MKTSFCSAAGLVVAAGFMSSTAQASGVVTAQQQITMFNPEDFVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATE 99
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: A0A6H5JV79_9PHAE (Cupin type-1 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV79_9PHAE) HSP 1 Score: 115 bits (287), Expect = 7.770e-30 Identity = 59/87 (67.82%), Postives = 67/87 (77.01%), Query Frame = 1
Query: 28 VIAAALASTATATHVLTAQEKISAFNPEDFAFALGGPAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
VIAA L S V+T Q++I+ +NPEDF F+LGGP D L+DGFQ R VNQLPAL+GQGISM LVNLD CAINLPHIHPRATE
Sbjct: 12 VIAAGLMSAVQVCGVVTVQQQITLYNPEDFVFSLGGPEPDALVDGFQLRTAVVNQLPALDGQGISMGLVNLDPCAINLPHIHPRATE 98
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: A0A7S3EC99_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EC99_9RHOD) HSP 1 Score: 61.6 bits (148), Expect = 5.460e-10 Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1
Query: 103 NPEDFAFALGG-PAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
N DF F L G PA+DN + G + +G + ++ PAL G G+S L +D C +NLPH+HPRATE
Sbjct: 39 NASDFKFDLAGAPASDNGV-GAKIQGGSQSRFPALNGLGVSYTLFTIDPCGMNLPHVHPRATE 100
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: A0A7S2ZJB7_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZJB7_9RHOD) HSP 1 Score: 61.6 bits (148), Expect = 2.100e-9 Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1
Query: 103 NPEDFAFALGG-PAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
N DF F L G PA+DN + G + +G + ++ PAL G G+S L +D C +NLPH+HPRATE
Sbjct: 39 NASDFKFDLAGAPASDNGV-GAKIQGGSQSRFPALNGLGVSYTLFTIDPCGMNLPHVHPRATE 100
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: A0A7S0G545_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G545_9RHOD) HSP 1 Score: 59.7 bits (143), Expect = 2.260e-9 Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 109 EDFAFALGGPAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
+DF F L G A N G + +G + + PAL G G+S L +D C +NLPH+HPRATE
Sbjct: 24 KDFKFNLAGAPASNNGVGAKIQGGSQARFPALNGLGVSYTLFTIDPCGMNLPHVHPRATE 83
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: A0A0G4IUK5_PLABS (Cupin type-1 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IUK5_PLABS) HSP 1 Score: 60.5 bits (145), Expect = 6.510e-9 Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 1
Query: 103 NPEDFAFALGGPAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
NP+ F + P G R + +LP L G GI+++LV+L ACAIN PHIHPRATE
Sbjct: 44 NPDQFFYDFSKPVKITQGPGGSLRTCGIEELPTLAGMGIAVSLVDLKACAINNPHIHPRATE 105
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: A0A7S0G8V0_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G8V0_9RHOD) HSP 1 Score: 55.1 bits (131), Expect = 1.970e-7 Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 1
Query: 103 NPEDFAFALGGPAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
N EDF F L AA N G + + ++ PAL G G+ L L+ C +NLPH+HPRATE
Sbjct: 39 NAEDFKFNLFEAAAANNGAGAMIQAGSQSRFPALNGLGLCYFLFTLEPCGMNLPHVHPRATE 100
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: A0A7S2ZX28_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZX28_9RHOD) HSP 1 Score: 54.7 bits (130), Expect = 4.360e-7 Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1
Query: 67 HVLTAQEKISAFNP--EDFAFALGGPAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
H LTA EK +P DF F L +A + G + + V+Q AL+G IS ++ LD C +NLPH+HPRATE
Sbjct: 25 HPLTALEKRIDDHPYDTDFIFHLANVSASDNGVGAKVKAGAVDQFHALDGLRISNSMFTLDPCGMNLPHVHPRATE 100 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig23225.6256.1 >prot_H-paniculata_contig23225.6256.1 ID=prot_H-paniculata_contig23225.6256.1|Name=mRNA_H-paniculata_contig23225.6256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp MKTSSTSFVVIAAALASTATATHVLTAQEKISAFNPEDFAFALGGPAADNback to top mRNA from alignment at H-paniculata_contig23225:603..1314- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig23225.6256.1 ID=mRNA_H-paniculata_contig23225.6256.1|Name=mRNA_H-paniculata_contig23225.6256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=712bp|location=Sequence derived from alignment at H-paniculata_contig23225:603..1314- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig23225:603..1314- >mRNA_H-paniculata_contig23225.6256.1 ID=mRNA_H-paniculata_contig23225.6256.1|Name=mRNA_H-paniculata_contig23225.6256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig23225:603..1314- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |