mRNA_H-paniculata_contig23225.6256.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23225.6256.1
Unique NamemRNA_H-paniculata_contig23225.6256.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: D7FIJ3_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ3_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 3.390e-36
Identity = 64/89 (71.91%), Postives = 75/89 (84.27%), Query Frame = 1
Query:   22 FVVIAAALASTATATHVLTAQEKISAFNPEDFAFALGGPAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
            FV+ A  ++ST  A+ V+TAQ++I+ FNPEDF F+LGGP  D L+DGFQ R VNVNQLPAL+GQGISMALVNLD CAINLPHIHPRATE
Sbjct:   10 FVIAAGLMSSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 98          
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: D7FI68_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI68_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.620e-35
Identity = 64/89 (71.91%), Postives = 74/89 (83.15%), Query Frame = 1
Query:   22 FVVIAAALASTATATHVLTAQEKISAFNPEDFAFALGGPAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
            FV+ A  + ST  A+ V+TAQ++I+ FNPEDF F+LGGP  D L+DGFQ R VNVNQLPAL+GQGISMALVNLD CAINLPHIHPRATE
Sbjct:   10 FVIAAGLMPSTVQASGVVTAQQQITLFNPEDFVFSLGGPEPDALVDGFQIRFVNVNQLPALDGQGISMALVNLDPCAINLPHIHPRATE 98          
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: D8LDW6_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW6_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 2.330e-30
Identity = 63/99 (63.64%), Postives = 75/99 (75.76%), Query Frame = 1
Query:    1 MKTSSTS---FVVIAAALASTATATHVLTAQEKISAFNPEDFAFALGGPAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
            MKTS  S    VV A  ++STA A+ V+TAQ++I+ FNPEDF F LGGP  D  +DGFQ R   + Q+PAL+GQGI+MALVNLDAC INLPHIHPRATE
Sbjct:    1 MKTSFCSAAGLVVAAGFMSSTAQASGVVTAQQQITMFNPEDFVFTLGGPEPDAPVDGFQIRAATLGQIPALDGQGIAMALVNLDACTINLPHIHPRATE 99          
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: A0A6H5JV79_9PHAE (Cupin type-1 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV79_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 7.770e-30
Identity = 59/87 (67.82%), Postives = 67/87 (77.01%), Query Frame = 1
Query:   28 VIAAALASTATATHVLTAQEKISAFNPEDFAFALGGPAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
            VIAA L S      V+T Q++I+ +NPEDF F+LGGP  D L+DGFQ R   VNQLPAL+GQGISM LVNLD CAINLPHIHPRATE
Sbjct:   12 VIAAGLMSAVQVCGVVTVQQQITLYNPEDFVFSLGGPEPDALVDGFQLRTAVVNQLPALDGQGISMGLVNLDPCAINLPHIHPRATE 98          
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: A0A7S3EC99_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EC99_9RHOD)

HSP 1 Score: 61.6 bits (148), Expect = 5.460e-10
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1
Query:  103 NPEDFAFALGG-PAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
            N  DF F L G PA+DN + G + +G + ++ PAL G G+S  L  +D C +NLPH+HPRATE
Sbjct:   39 NASDFKFDLAGAPASDNGV-GAKIQGGSQSRFPALNGLGVSYTLFTIDPCGMNLPHVHPRATE 100          
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: A0A7S2ZJB7_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZJB7_9RHOD)

HSP 1 Score: 61.6 bits (148), Expect = 2.100e-9
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1
Query:  103 NPEDFAFALGG-PAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
            N  DF F L G PA+DN + G + +G + ++ PAL G G+S  L  +D C +NLPH+HPRATE
Sbjct:   39 NASDFKFDLAGAPASDNGV-GAKIQGGSQSRFPALNGLGVSYTLFTIDPCGMNLPHVHPRATE 100          
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: A0A7S0G545_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G545_9RHOD)

HSP 1 Score: 59.7 bits (143), Expect = 2.260e-9
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:  109 EDFAFALGGPAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
            +DF F L G  A N   G + +G +  + PAL G G+S  L  +D C +NLPH+HPRATE
Sbjct:   24 KDFKFNLAGAPASNNGVGAKIQGGSQARFPALNGLGVSYTLFTIDPCGMNLPHVHPRATE 83          
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: A0A0G4IUK5_PLABS (Cupin type-1 domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IUK5_PLABS)

HSP 1 Score: 60.5 bits (145), Expect = 6.510e-9
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 1
Query:  103 NPEDFAFALGGPAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
            NP+ F +    P       G   R   + +LP L G GI+++LV+L ACAIN PHIHPRATE
Sbjct:   44 NPDQFFYDFSKPVKITQGPGGSLRTCGIEELPTLAGMGIAVSLVDLKACAINNPHIHPRATE 105          
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: A0A7S0G8V0_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G8V0_9RHOD)

HSP 1 Score: 55.1 bits (131), Expect = 1.970e-7
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 1
Query:  103 NPEDFAFALGGPAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
            N EDF F L   AA N   G   +  + ++ PAL G G+   L  L+ C +NLPH+HPRATE
Sbjct:   39 NAEDFKFNLFEAAAANNGAGAMIQAGSQSRFPALNGLGLCYFLFTLEPCGMNLPHVHPRATE 100          
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Match: A0A7S2ZX28_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZX28_9RHOD)

HSP 1 Score: 54.7 bits (130), Expect = 4.360e-7
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   67 HVLTAQEKISAFNP--EDFAFALGGPAADNLMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE 288
            H LTA EK    +P   DF F L   +A +   G + +   V+Q  AL+G  IS ++  LD C +NLPH+HPRATE
Sbjct:   25 HPLTALEKRIDDHPYDTDFIFHLANVSASDNGVGAKVKAGAVDQFHALDGLRISNSMFTLDPCGMNLPHVHPRATE 100          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23225.6256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FIJ3_ECTSI3.390e-3671.91Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
D7FI68_ECTSI1.620e-3571.91Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
D8LDW6_ECTSI2.330e-3063.64Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JV79_9PHAE7.770e-3067.82Cupin type-1 domain-containing protein n=6 Tax=Ect... [more]
A0A7S3EC99_9RHOD5.460e-1049.21Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZJB7_9RHOD2.100e-949.21Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S0G545_9RHOD2.260e-946.67Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A0G4IUK5_PLABS6.510e-946.77Cupin type-1 domain-containing protein n=1 Tax=Pla... [more]
A0A7S0G8V0_9RHOD1.970e-745.16Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S2ZX28_9RHOD4.360e-743.42Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23225contigH-paniculata_contig23225:603..1314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue1.2e-27
Seed eggNOG ortholog2880.D8LDW5
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.nutrient reservoir activity
EggNOG OGs2BYKQ@1,2QQ4A@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size288
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.8440342-CDS-H-paniculata_contig23225:602..8061622929656.8440342-CDS-H-paniculata_contig23225:602..806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23225 603..806 -
1691480954.0415344-CDS-H-paniculata_contig23225:602..8061691480954.0415344-CDS-H-paniculata_contig23225:602..806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23225 603..806 -
1622929656.8580654-CDS-H-paniculata_contig23225:1230..13141622929656.8580654-CDS-H-paniculata_contig23225:1230..1314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23225 1231..1314 -
1691480954.0550694-CDS-H-paniculata_contig23225:1230..13141691480954.0550694-CDS-H-paniculata_contig23225:1230..1314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23225 1231..1314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23225.6256.1prot_H-paniculata_contig23225.6256.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23225 603..1314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23225.6256.1

>prot_H-paniculata_contig23225.6256.1 ID=prot_H-paniculata_contig23225.6256.1|Name=mRNA_H-paniculata_contig23225.6256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MKTSSTSFVVIAAALASTATATHVLTAQEKISAFNPEDFAFALGGPAADN
LMDGFQFRGVNVNQLPALEGQGISMALVNLDACAINLPHIHPRATE
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mRNA from alignment at H-paniculata_contig23225:603..1314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23225.6256.1 ID=mRNA_H-paniculata_contig23225.6256.1|Name=mRNA_H-paniculata_contig23225.6256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=712bp|location=Sequence derived from alignment at H-paniculata_contig23225:603..1314- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGACCTCATCCACGAGCTTTGTCGTCATCGCTGCCGCGCTAGCTTC TACTGCCACGGCTACGCATGTGCTCACCGCGCAGGTAAGAGACGTGGGGC GGTTCAAAACATGTCATAGAAGTATTAGGCCAGGTGGTCGTTATTACAAC GAAATGTACCTTGACGTTTGCAGTTGGCCAGAGATTATCACTATACTGCC GAAGCCAAACTCGGTGTTTCCAAGTTTGGGTCGATTAGGGGTGCCGTGCA CGTTCGACGTTCGACGTTCGACGTTTGGCGTTTGGCGTGTGCTTCGGGGC TTTGTTGACTGGTGAGAATGATACGCCTTGTTGCTGAGCTGCGATGGCCA TGAGTGATGCGCGCTGTGGTACTGCAGCTCCGGGAGAATCATTCAGGTAA CGCGAGCTTATTGCCGCGGTTTCGGAGCTCTCCTCGCATGTTATACTGCT GGTTGTCGGTGCCTTTGTAAACCGAGACCATTGCCCCCCGCGCTCCCGAT CCTTCCAGGAAAAAATCTCAGCGTTCAACCCCGAGGATTTCGCCTTCGCA CTTGGTGGACCCGCGGCTGATAACCTCATGGACGGCTTCCAGTTTCGCGG CGTGAACGTAAATCAACTACCGGCACTGGAGGGCCAGGGTATCTCAATGG CTCTGGTCAACCTGGACGCGTGCGCCATCAACTTGCCCCACATCCACCCC CGAGCGACCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig23225:603..1314-

>mRNA_H-paniculata_contig23225.6256.1 ID=mRNA_H-paniculata_contig23225.6256.1|Name=mRNA_H-paniculata_contig23225.6256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig23225:603..1314- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGACCTCATCCACGAGCTTTGTCGTCATCGCTGCCGCGCTAGCTTC
TACTGCCACGGCTACGCATGTGCTCACCGCGCAGATGAAGACCTCATCCA
CGAGCTTTGTCGTCATCGCTGCCGCGCTAGCTTCTACTGCCACGGCTACG
CATGTGCTCACCGCGCAGGAAAAAATCTCAGCGTTCAACCCCGAGGATTT
CGCCTTCGCACTTGGTGGACCCGCGGCTGATAACCTCATGGACGGCTTCC
AGTTTCGCGGCGTGAACGTAAATCAACTACCGGCACTGGAGGGCCAGGGT
ATCTCAATGGCTCTGGTCAACCTGGACGCGTGCGCCATCAACTTGCCCCA
CATCCACCCCCGAGCGACCGAGGAAAAAATCTCAGCGTTCAACCCCGAGG
ATTTCGCCTTCGCACTTGGTGGACCCGCGGCTGATAACCTCATGGACGGC
TTCCAGTTTCGCGGCGTGAACGTAAATCAACTACCGGCACTGGAGGGCCA
GGGTATCTCAATGGCTCTGGTCAACCTGGACGCGTGCGCCATCAACTTGC
CCCACATCCACCCCCGAGCGACCGAG
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