mRNA_H-paniculata_contig23201.6247.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23201.6247.1
Unique NamemRNA_H-paniculata_contig23201.6247.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23201.6247.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 1.360e-5
Identity = 27/56 (48.21%), Postives = 33/56 (58.93%), Query Frame = 1 
Query:   58 ADGEIPRELDEFLVFLERLHTFKTGNNPWGEPPAAVVGDGRNISAVRSYFVDLYRE 225
            A   +P++L+  L  L RL  F    NPW EPP AVV  G  ISAV+ YF DL+ E
Sbjct:  223 AGNALPKQLEALLATLSRLG-FLVHENPWQEPPEAVVSKG--ISAVQEYFTDLFAE 275
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23201.6247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FL98_ECTSI1.360e-548.21LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23201contigH-paniculata_contig23201:547..1074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size238
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929656.1935937-CDS-H-paniculata_contig23201:546..6071622929656.1935937-CDS-H-paniculata_contig23201:546..607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23201 547..607 +
1691480953.7963195-CDS-H-paniculata_contig23201:546..6071691480953.7963195-CDS-H-paniculata_contig23201:546..607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23201 547..607 +
1622929656.2226572-CDS-H-paniculata_contig23201:897..10731622929656.2226572-CDS-H-paniculata_contig23201:897..1073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23201 898..1073 +
1691480953.8069222-CDS-H-paniculata_contig23201:897..10731691480953.8069222-CDS-H-paniculata_contig23201:897..1073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23201 898..1073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23201.6247.1prot_H-paniculata_contig23201.6247.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23201 547..1073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23201.6247.1

>prot_H-paniculata_contig23201.6247.1 ID=prot_H-paniculata_contig23201.6247.1|Name=mRNA_H-paniculata_contig23201.6247.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
GLWDCGAYAETRHAQDETFADGEIPRELDEFLVFLERLHTFKTGNNPWGE
PPAAVVGDGRNISAVRSYFVDLYREKRVV
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mRNA from alignment at H-paniculata_contig23201:547..1074+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23201.6247.1 ID=mRNA_H-paniculata_contig23201.6247.1|Name=mRNA_H-paniculata_contig23201.6247.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=528bp|location=Sequence derived from alignment at H-paniculata_contig23201:547..1074+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTATGGGACTGTGGTGCATACGCGGAGACGAGGCACGCGCAGGATGA
GACATTTGCAGGTGCACGTACGGGAGGTCGGAAAGCGTGGAATACATGTG
TTTCAAAGGTGGACTTGTGCTGACGATGCTCCTACGAGTCAAGGCCGTCT
CGTATTGTGCATTGTGGTACATGAATACCCGTGTTGATATCCCTTATTAT
GTCCGTTTTAACCGGGTTGCGAAGCGCCGCCCTCAATGTAAATTGGTCTG
TCGTGTATATTGCAGCGGCTGCGTTCATACCCACATTTGTCTCGAGTCGC
AGATATTAGCCGTTAGTGAACTCCGCTTTTCTTGTCTTCGCTCTCCGCTA
GATGGGGAAATTCCGAGGGAACTTGATGAGTTCCTTGTGTTCCTGGAGAG
ACTTCATACGTTCAAGACTGGAAACAATCCATGGGGGGAGCCCCCAGCTG
CTGTGGTTGGAGACGGGAGAAACATTTCCGCAGTGAGGTCTTATTTCGTG
GATCTCTACCGGGAGAAGAGAGTAGTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig23201:547..1074+

>mRNA_H-paniculata_contig23201.6247.1 ID=mRNA_H-paniculata_contig23201.6247.1|Name=mRNA_H-paniculata_contig23201.6247.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig23201:547..1074+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTATGGGACTGTGGTGCATACGCGGAGACGAGGCACGCGCAGGATGA
GACATTTGCAGGGGCTATGGGACTGTGGTGCATACGCGGAGACGAGGCAC
GCGCAGGATGAGACATTTGCAGATGGGGAAATTCCGAGGGAACTTGATGA
GTTCCTTGTGTTCCTGGAGAGACTTCATACGTTCAAGACTGGAAACAATC
CATGGGGGGAGCCCCCAGCTGCTGTGGTTGGAGACGGGAGAAACATTTCC
GCAGTGAGGTCTTATTTCGTGGATCTCTACCGGGAGAAGAGAGTAGTTAT
GGGGAAATTCCGAGGGAACTTGATGAGTTCCTTGTGTTCCTGGAGAGACT
TCATACGTTCAAGACTGGAAACAATCCATGGGGGGAGCCCCCAGCTGCTG
TGGTTGGAGACGGGAGAAACATTTCCGCAGTGAGGTCTTATTTCGTGGAT
CTCTACCGGGAGAAGAGAGTAGTT
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