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Homology
BLAST of mRNA_H-paniculata_contig2314.6227.1 vs. uniprot
Match: D7G4T5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T5_ECTSI) HSP 1 Score: 222 bits (565), Expect = 2.080e-64 Identity = 131/268 (48.88%), Postives = 170/268 (63.43%), Query Frame = 1
Query: 22 QGKEVVLDSATGDFYIFDAKSDRWLAEGNVGILKTGAGLGGVAAAILADACGNMEGYGKKRAIPLAELLVRRRDSQLAGDINTKALDRPSTPRQVVVRRRLSRLKRIHRP-AVRVQCKEAIY---ANKLLSPGCVLERSRQ--RVFLPQLSRTITRACTTWGLSWYVFEFHSEVLVRVCPTSILNRLFDHAKGGEFLAWSPGEWSLGKAATVRSRHSFKVLAVSMRAGPEIVEADNCLATRYNVRPAYEGSAGVMRAFVDHKYAVIRE 807
+ KEVVLDSATGDFY+F+ K+DRW+AEGNVGI K+ G+GGVAAAILADA G +G+G ++ P+ ELL RR Q A DI++K L RP TPR+V V L + HR R Q + + K S G VL + F L+ R GL+ + F SEVLVRV P S+ +R H GEF+AWSPG+WS+G+A R R +F VLA S RAGPE+VE NCLATR+NVR Y+ S G+++AFV+ K+ +IR+
Sbjct: 5 EAKEVVLDSATGDFYVFNFKTDRWVAEGNVGIQKSCGGMGGVAAAILADAAGG-QGHGCEQKFPVNELLGVRRSVQSAADISSKTLQRPKTPRRVHVTGVADVLGQTHRQMGHRSQHSQRSWRRKGRKCTSSGLVLVGGEEIPDTFCTGLTTHPIRGWCRAGLATTLDRFQSEVLVRVRPKSVQHRFLKHVHCGEFIAWSPGKWSIGEATAARCRQTFTVLAASNRAGPEVVEVGNCLATRFNVRHGYQHSTGLLQAFVEDKHILIRD 271
BLAST of mRNA_H-paniculata_contig2314.6227.1 vs. uniprot
Match: A0A6H5L342_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L342_9PHAE) HSP 1 Score: 205 bits (522), Expect = 1.910e-57 Identity = 125/268 (46.64%), Postives = 163/268 (60.82%), Query Frame = 1
Query: 28 KEVVLDSATGDFYIFDAKSDRWLAEGNVGILKTGAGLGGVAAAILADACGNMEGYGKKRAIPLAELLVRRRDSQLAGDINTKALDRPSTPRQVVVRRRLSRLKRIHRPAVRVQCKEAIYA-----NKLLSPGCVLERSRQRV---FLPQLSRTITRACTTWGLSWYVFEFHSEVLVRVCPTSILNRLFDHAKGGEFLAWSPGEWSLGKAATVRSRHSFKVLAVSMRAGPEIVEADNCLATRYNVRPAYEGSAGVMRAFVDHKYAVIRE 807
KEVVLDSATGDFY+FD K+DRW+AEGNVGI K+ G+GG+AAAILADA G +G+G ++ P+ ELL RR Q A DI++K L RP TPR R+H P V V +A +K + C++ R+ + F L+ R GL + F SEVLVRV P S+ +R H GEFLAWSPG+WS+G+A R R +F VLA S RAGPE+VE NCLATR++ S ++RAFV+ K+ +IR+
Sbjct: 5 KEVVLDSATGDFYVFDFKTDRWVAEGNVGIQKSCGGMGGIAAAILADAAGG-QGHGCEQKFPVNELLGVRRSIQSAADISSKTLQRPKTPR------------RVHEPDVAVVLGQAHRQTGHSLSKASAISCLVLVGREEIPDTFGTGLTTHPIRGWCHVGLVTPLDRFQSEVLVRVRPKSVQHRFLKHVHCGEFLAWSPGKWSIGEATAARCRQTFTVLAASNRAGPEVVEIGNCLATRHH-------STSLLRAFVEDKHILIRD 252
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 816 |
| Cds size | 816 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2314.6227.1 >prot_H-paniculata_contig2314.6227.1 ID=prot_H-paniculata_contig2314.6227.1|Name=mRNA_H-paniculata_contig2314.6227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=272bp
MSHVHQQQGKEVVLDSATGDFYIFDAKSDRWLAEGNVGILKTGAGLGGVA
AAILADACGNMEGYGKKRAIPLAELLVRRRDSQLAGDINTKALDRPSTPR
QVVVRRRLSRLKRIHRPAVRVQCKEAIYANKLLSPGCVLERSRQRVFLPQ
LSRTITRACTTWGLSWYVFEFHSEVLVRVCPTSILNRLFDHAKGGEFLAW
SPGEWSLGKAATVRSRHSFKVLAVSMRAGPEIVEADNCLATRYNVRPAYE
GSAGVMRAFVDHKYAVIREIK* back to topmRNA from alignment at H-paniculata_contig2314:18052..21350+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2314.6227.1 ID=mRNA_H-paniculata_contig2314.6227.1|Name=mRNA_H-paniculata_contig2314.6227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3299bp|location=Sequence derived from alignment at H-paniculata_contig2314:18052..21350+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACATGTACATCAACAACAGGGTAAAGAGGTTGTACTCGACTCAGC
CACGGGAGATTTCTATATTTTTGATGCCAAGAGCGATCGCTGGTTGGCGG
AAGGAAACGTTGGGATTCTGAAAACCGGTGCAGGGCTCGGTGGGGTGGCT
GCTGCCATCCTAGCAGACGCCTGTGGAAATATGGAGGGGTACGGCAAAAA
GAGAGCGGTTAGTCTTCTAGCCTTTAGCAGTTGCAAGTTCGTCGCGCTTT
CCTTCGTTGCCCTGTCACACATAGACCCATACAATATGGTAGGAGGGGAA
GATACAGCAGAGTAGGGGACGCTCCGTTTGGATCAGTTGCGGCTGGTGTA
ACCCGTAGCAATACCATCAATTGAGGAGTTTGGGGTTCCGCAGTATGTAG
CTCAAACTTCCTCGAGCACGTACACTCGGTGTCCTGATAGATGCATCTCA
GCTGCCGTTTTTCCTCGTCTTAGTCGTCGACCTGTCGAATGCTTGGCGCG
CTGCCACTCTACCGTGGCGTGGTGTGGTTCATTCATGTTTGAAGATACCG
CTTGCGGAACTACTCGTAAGAAGGCGGGACAGTCAGCTGGCAGGGGACAT
CAACACCAAGGCTTTAGACCGACCGAGCACTCCCAGGCAAGTGGTCGTTC
GCCGCCGGCTTTCTCGCCTCAAACGTATAGTGGTGCCGTTTTCAAGATAT
TTAATATATTATCTAAAATATTCTTCACGAGCATCGTCCAGCTGTAAGAG
TGCAATGCAAAGAAGCAATTTACGCCAACAAACTGCTATCACCGGGGTGC
GTATTGGAACGATCGCGACAACGCGTTTTCTTGCCACAGCTGTCTCGCAC
CATCACCCGCGCTTGCACGACATGGGGTTTAAGTTGGTACGTATTCGAGT
GATAAAACAATACTGCAGTTTCATCACTAGAGCGAATGGTGTAGTTTCAA
CCGACCGCAATTTACCATCAAGCAATTTCCTAACCGTACGTCTTGGCCAC
ACACCCACCCACCCACTCGAATGCGAACTGCGGTCGTCCCCGCCCCGGCT
ATTTTAGAAGTATATCAGAGACTTGATGAAGAGATGGGTTTGAAGGGGTA
CCTACGTGAACCATTAGACACAGACACATTGTTGAAAGTAAAATTTAGGA
CGGAAGATCCTGACTTCGAGGGACGTAGGAAGAAATTCAGGAAAATTAAC
GACAGTGACGATAAGTTCAAGTGTAACAGCGTTCGTTCGTGCGAGGACCG
AAGTCAGGTCGTGAGAGAATGCCCCTTACATGAAAAGAGAGAAAAATCTC
ATATGAGCGAACTAGGGAAAATCGAAGGATGCGATAGAGAGGCATTCGAG
TCCTGGAATTGCGAAAAGAAGGGCATAGTGTTTCCAGTGGGGAAATGACC
TGAACACGCGAGGGTTGAGGTAGATAAGGTAGGTAAAACATTTTTGAGCA
ACACTTGGCAAGTAGGGAAGAGCGATTGACCATCGAAAGTCGCTCTGACG
GAAACTACACTCTGTCCTCCTGAGCACACGTGGTTAATGACCTAACAACT
GCGACATGTAAAACATGAATATGTCCCCCTCCCCCATTGCTCCGACCCTC
TGCCTTATTTCCCTTCTGCGTATCCAGGTTCCACAGCGAGGTATTGGTTC
GAGTGTGTCCCACTAGCATTTTGAACCGCCTATTCGATCATGCTAAAGGC
GGCGAGTTCCTGGCTTGGAGCCCCGGAGAGTGGAGTTTAGGCAAGGCAGC
AACTGTACGATCCAGGTGAGCGATTTGTACTAGTGCATACAAGCGTTTTA
TTTACATGTCACAATCGCATTCGTTGTATTTGTTGTGTATGTTCTTCATC
GGCAAAGTACTCACCAACGGTTGTCTTCCATGAGCTTTGCTAGATCCCTT
AGGTGATTGGACGCTGTTCAACGGGTTTGCGCACCCTGGCCCAATAACAA
CTGCGAGTTTTTGGTAGGCATTGACTGTTTGAAGTGCCATTCATCAAGCT
GGTCTATTTCTACAGGAAAATCGCCTTGGCCGGTCCCACGTTTTCGCCGA
AAGCATGGGTAGGAATTAACGCCATCGAAAATAGGAAGGACATGCTTCGC
AGAGCAAAACAACGAGTGAATGGAAGCGCGTTCATCTGTGTATCTCCTGA
GAAACGGAGATGGCTGCTTGTTTTCTGCCGAAAGTGGGAAGGAAGAATGA
CACACTAGTATATGCTCTGAATATACATACACCAGACAACACATTTGGTC
CTGATGAAGCCCGTCAGCAGCGGTGCGCATTTAGACATTTTCTTTACAGT
TATACGACGTGCGAAGTAGCCGACCCAAAAGCTCTCGCACGGATTGGGGC
GATGTTTTTGACATTGCAATCGAATCATCGTTTCTTTTTTAAGACGTAAA
AACACAAAATGTATATTTCTATGTTTCTTCGTTGCAAAAATTGAATATCA
GGCATAGCTTCAAGGTACTAGCAGTATCGATGCGGGCTGGGCCGGAGATT
GTGGAGGCCGACAATTGCCTTGCCACAAGGTATGACCTTAATATGAATAT
GATAGACCACGTACTACAGTTGTACTTTGGTACCACTTCTTAAGTTGGAG
ATGTTCTTCACGTATTCAGCTTCACAGCTCAACTCTGGTGAAGGGTACGA
TATGTGACAAAAAATACTGCATGAAGTCATTTCACAGCTGCTTTAAAAAT
GTGCGTGTGCTGATGTTTACTGTGTGGTGGCACTACGCGGAAACAAGCAA
CAAATCCTTGCGCAAGTTAGGCTCAACAGCCACTGCGTAGTTGGTCAGTT
TAGTGCCACACAAGCCATCACCCAGGATTTTACTATGTTGCATAGCATTT
CAAAGGTACCAATGATTTTAGTTTAATGTAAATCCTAAGATCAAGATGCT
GGGCAATCGATCAACCAGGCTTCGTTAGAGCGCGAAGGGGACAGTGGGCT
GAGGCAACGTGGGGCAGAAGATTCCATTACCTTGTCTTTCATGGTTACCG
TCGTTTGTGCGTGCGCCTCTCCACGAAACGCAAGGATCTATAAACTTTTT
CTTTCAGTTTCCACTTCGTGTGTGCAAGTTCAACCAACTCATCACATTCA
CCGGCCTCTAATTGAGCAGGTGAAAAGGCTGCACTGTCATTGTCATCGCA
GAGCATGTAACACGAGGGTTCTTACCTCTCTCTCTCTCTCTCTCTCTCTC
TCATCCAGGTACAACGTACGCCCGGCATACGAGGGCTCCGCTGGAGTGAT
GAGAGCATTTGTGGATCATAAGTACGCCGTCATCCGCGAGATCAAGTGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig2314:18052..21350+ >mRNA_H-paniculata_contig2314.6227.1 ID=mRNA_H-paniculata_contig2314.6227.1|Name=mRNA_H-paniculata_contig2314.6227.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at H-paniculata_contig2314:18052..21350+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACATGTACATCAACAACAGGGTAAAGAGGTTGTACTCGACTCAGC
CACGGGAGATTTCTATATTTTTGATGCCAAGAGCGATCGCTGGTTGGCGG
AAGGAAACGTTGGGATTCTGAAAACCGGTGCAGGGCTCGGTGGGGTGGCT
GCTGCCATCCTAGCAGACGCCTGTGGAAATATGGAGGGGTACGGCAAAAA
GAGAGCGATGTCACATGTACATCAACAACAGGGTAAAGAGGTTGTACTCG
ACTCAGCCACGGGAGATTTCTATATTTTTGATGCCAAGAGCGATCGCTGG
TTGGCGGAAGGAAACGTTGGGATTCTGAAAACCGGTGCAGGGCTCGGTGG
GGTGGCTGCTGCCATCCTAGCAGACGCCTGTGGAAATATGGAGGGGTACG
GCAAAAAGAGAGCGATACCGCTTGCGGAACTACTCGTAAGAAGGCGGGAC
AGTCAGCTGGCAGGGGACATCAACACCAAGGCTTTAGACCGACCGAGCAC
TCCCAGGCAAGTGGTCGTTCGCCGCCGGCTTTCTCGCCTCAAACGTATAA
TACCGCTTGCGGAACTACTCGTAAGAAGGCGGGACAGTCAGCTGGCAGGG
GACATCAACACCAAGGCTTTAGACCGACCGAGCACTCCCAGGCAAGTGGT
CGTTCGCCGCCGGCTTTCTCGCCTCAAACGTATACATCGTCCAGCTGTAA
GAGTGCAATGCAAAGAAGCAATTTACGCCAACAAACTGCTATCACCGGGG
TGCGTATTGGAACGATCGCGACAACGCGTTTTCTTGCCACAGCTGTCTCG
CACCATCACCCGCGCTTGCACGACATGGGGTTTAAGTTGGTACGTATTCG
ACATCGTCCAGCTGTAAGAGTGCAATGCAAAGAAGCAATTTACGCCAACA
AACTGCTATCACCGGGGTGCGTATTGGAACGATCGCGACAACGCGTTTTC
TTGCCACAGCTGTCTCGCACCATCACCCGCGCTTGCACGACATGGGGTTT
AAGTTGGTACGTATTCGAGTTCCACAGCGAGGTATTGGTTCGAGTGTGTC
CCACTAGCATTTTGAACCGCCTATTCGATCATGCTAAAGGCGGCGAGTTC
CTGGCTTGGAGCCCCGGAGAGTGGAGTTTAGGCAAGGCAGCAACTGTACG
ATCCAGGTTCCACAGCGAGGTATTGGTTCGAGTGTGTCCCACTAGCATTT
TGAACCGCCTATTCGATCATGCTAAAGGCGGCGAGTTCCTGGCTTGGAGC
CCCGGAGAGTGGAGTTTAGGCAAGGCAGCAACTGTACGATCCAGGCATAG
CTTCAAGGTACTAGCAGTATCGATGCGGGCTGGGCCGGAGATTGTGGAGG
CCGACAATTGCCTTGCCACAAGGCATAGCTTCAAGGTACTAGCAGTATCG
ATGCGGGCTGGGCCGGAGATTGTGGAGGCCGACAATTGCCTTGCCACAAG
GTACAACGTACGCCCGGCATACGAGGGCTCCGCTGGAGTGATGAGAGCAT
TTGTGGATCATAAGTACGCCGTCATCCGCGAGATCAAGTGAGTACAACGT
ACGCCCGGCATACGAGGGCTCCGCTGGAGTGATGAGAGCATTTGTGGATC
ATAAGTACGCCGTCATCCGCGAGATCAAGTGA back to top
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