mRNA_H-paniculata_contig23109.6217.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23109.6217.1
Unique NamemRNA_H-paniculata_contig23109.6217.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23109.6217.1 vs. uniprot
Match: D8LTP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP8_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.210e-25
Identity = 54/112 (48.21%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:    1 VVLGAFVAGSLVGIIICAPAFVVVVFGAGLGGLCLRDGKVGDFARKVGGLGEKVILAVVKKTRELNDRFHIADKAKTLAKDTGSRIQKADEKRGFSKNLKARASSLWLHIDE 336
            +V G+F+AG+LVG++ICAPAFVV++FGAG   L   D KVG F+RKVG +   ++LAV +  RE N +  + DKAK  AK+   ++     K G   N+KARASSLW  +D+
Sbjct:   54 IVFGSFIAGALVGVVICAPAFVVLLFGAGAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQVDK 165
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BLAST of mRNA_H-paniculata_contig23109.6217.1 vs. uniprot
Match: D8LTQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ0_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.390e-11
Identity = 41/118 (34.75%), Postives = 65/118 (55.08%), Query Frame = 1 
Query:    1 VVLGAFVAGSLVGIIIC------APAFVVVVFGAGLGGLCLRDGKVGDFARKVGGLGEKVILAVVKKTRELNDRFHIADKAKTLAKDTGSRIQKADEKRGFSKNLKARASSLWLHIDE 336
            +VLG+FVAG+LVG I+C      AP  VV++ GAG       D K G  +R+VG     V LA+ +  RE N ++ +  K +  A++   +++   ++ G    +K RA SLW  +D+
Sbjct:   47 IVLGSFVAGALVGAILCVRVFMFAPTVVVLLCGAGAAVFTKSDSKAGQISREVGKWTCDVFLALFRVVREFNYKYQLTVKVRITAQEAAGKVKAEVQRLGICDGVKTRARSLWEQVDK 164
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BLAST of mRNA_H-paniculata_contig23109.6217.1 vs. uniprot
Match: A0A6H5JUV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV7_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 7.340e-10
Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = 1 
Query:    1 VVLGAFVAGSLVGIIICA------PAFVVVVFGAGLGGLCLRDGKVGDF----------ARKVGGLGEKVILAVVKKTRELNDRFHIADKAKTLAKDTGSRIQKADEKRGFSKNLKARASSLWLHI 330
            ++LG+FVAG+L+G IICA      P  VV++ GAG       D +VG F          +R VG     V LA+ +  RE N ++ +ADK K  A++   +++   ++ G    +K RA SLW  +
Sbjct:   47 IMLGSFVAGALMGAIICARVFMFAPMVVVLLCGAGAAVFTNSDSEVGKFVVRLRWAGQISRGVGKWTSDVFLALFRVVREFNYKYQLADKVKITAQEAARKVKAEVQRIGICDGVKTRARSLWEQV 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23109.6217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTP8_ECTSI1.210e-2548.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LTQ0_ECTSI1.390e-1134.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUV7_9PHAE7.340e-1034.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23109contigH-paniculata_contig23109:3..1607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size336
Cds size336
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23109.6217.1prot_H-paniculata_contig23109.6217.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23109 3..1607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929651.7635663-CDS-H-paniculata_contig23109:2..1191622929651.7635663-CDS-H-paniculata_contig23109:2..119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23109 3..119 +
1691480952.0065293-CDS-H-paniculata_contig23109:2..1191691480952.0065293-CDS-H-paniculata_contig23109:2..119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23109 3..119 +
1622929651.779041-CDS-H-paniculata_contig23109:817..9221622929651.779041-CDS-H-paniculata_contig23109:817..922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23109 818..922 +
1691480952.0160773-CDS-H-paniculata_contig23109:817..9221691480952.0160773-CDS-H-paniculata_contig23109:817..922Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23109 818..922 +
1622929651.7897222-CDS-H-paniculata_contig23109:1493..16071622929651.7897222-CDS-H-paniculata_contig23109:1493..1607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23109 1494..1607 +
1691480952.0259826-CDS-H-paniculata_contig23109:1493..16071691480952.0259826-CDS-H-paniculata_contig23109:1493..1607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23109 1494..1607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23109.6217.1

>prot_H-paniculata_contig23109.6217.1 ID=prot_H-paniculata_contig23109.6217.1|Name=mRNA_H-paniculata_contig23109.6217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
VVLGAFVAGSLVGIIICAPAFVVVVFGAGLGGLCLRDGKVGDFARKVGGL
GEKVILAVVKKTRELNDRFHIADKAKTLAKDTGSRIQKADEKRGFSKNLK
ARASSLWLHIDE
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mRNA from alignment at H-paniculata_contig23109:3..1607+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23109.6217.1 ID=mRNA_H-paniculata_contig23109.6217.1|Name=mRNA_H-paniculata_contig23109.6217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1605bp|location=Sequence derived from alignment at H-paniculata_contig23109:3..1607+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGTTCTCGGTGCCTTCGTAGCCGGCTCTCTCGTGGGGATCATCATCTG
CGCGCCAGCTTTCGTCGTCGTAGTTTTCGGTGCGGGCCTCGGGGGTCTGT
GTCTTCGTGACGGGAAGGTAGGATTAGAGCCTTTTGTTGGTCGTTTTCGG
AGTCCTCAACTTGGGTGGACACGGTTAAACGGTTGTGGTCGAGTGCAGTA
TGTAGATGCACAGCACACAAGTTCTTCGTAGGTTCAAGATATGAAAACAT
GATTATCTTGGCTGTAGGTATATCACAAGCATATCAGTACGAGACAGGTC
TGACATCTGCACTGTTAAAACGCGATAAATTGTTCGATACGCTGAGAACT
GGAATTTAAGAATTAAGAACGGGGAGCGGGTCGCTCGCGAGCCTCGACCC
GGCAAGAATGATCTCCCCATGCTAAATTACACACCCCGAATATTTGGTTT
CATCATTGTATGTCTGGAGTGTCAAAACGACCAGAGTAATCGGCGCTTCA
GCACTACGAAATTAGGGTGCAGTCAGTTGCAAACGGTCAGCACGGTAGCT
GGCTTTCCAACACAGGGAAGGAAGTATACATTTCGTGTCATATTGAAGAG
TTGTTTTTCTGTTGCGCATATTACAGTACACAACGATCGAACAATGTTAA
CTGTGGTGGCCGCACGCGAGATATTAAATTGATCCAGCTTGAGCAAGAGG
CATCAGTCGAAACGGGTATCGACCGCGAGCCAGAGGCAGTAGTGCCAATG
CCAATGTCAACAACGACCGCATTATATTATTCCTGAGAATATATCTCGCG
GGTCCCAAACACTAGGTGGGAGACTTTGCGCGGAAAGTCGGAGGCTTAGG
GGAAAAAGTGATCCTGGCTGTGGTGAAGAAGACCCGCGAACTCAACGACC
GTTTTCACATCGCGGATAAGGTACGGGGCACCACGAGCGATGAATACATA
CGTGTACCTCAAAAAGACAGATATAAGATGTGTAACCACGATACTTTTTA
TGGCCGACCAGTTCGATCATCAGGGGTATTTTCATGTGTGTCGCGTGCGT
AGCGCCACTCTCATGGGGGGGGTGCCTGTGTGCACAGCTACTTGGTCGGG
AGCGCACGCGCTCTTCTAGGTCTATCTCATCTTCCTGCGAACCTACTTCA
ACGCTAAGCTCCCGTTCGCCGTGGCTCTGTGCTGCTAAGTTATGAGTAAT
TAGGGTTTCCGCGGTGATTTTCCGATTTCCTTGCTTGCTTTCTTGACCGA
TGACGGCAACCGCCCATGGTGTCCTTGAACGACATAAAAATTGAAAGTAT
GCTATCCTCTGCACCGATGTATTCGATGGTATCGATCGGTGCCGATACAC
AATCAGCCCTGATAATTTCCATCAGTAGCGTTGTTCCCTCAATACACTCA
CTTCTAATAGCCGTGTCTGTGTCAGTGCTCGATTCGAATGCGTGTACCGA
ACAAATCGCTGTTGTCCACCATCATGTTTGCTACCATGAAGGCGAAAACC
CTTGCCAAGGACACGGGGTCACGAATTCAGAAGGCGGACGAGAAGCGCGG
GTTCAGCAAGAACTTAAAGGCGAGAGCTTCGTCCTTGTGGTTACACATCG
ATGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig23109:3..1607+

>mRNA_H-paniculata_contig23109.6217.1 ID=mRNA_H-paniculata_contig23109.6217.1|Name=mRNA_H-paniculata_contig23109.6217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig23109:3..1607+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCGTTCTCGGTGCCTTCGTAGCCGGCTCTCTCGTGGGGATCATCATCTG
CGCGCCAGCTTTCGTCGTCGTAGTTTTCGGTGCGGGCCTCGGGGGTCTGT
GTCTTCGTGACGGGAAGGTCGTTCTCGGTGCCTTCGTAGCCGGCTCTCTC
GTGGGGATCATCATCTGCGCGCCAGCTTTCGTCGTCGTAGTTTTCGGTGC
GGGCCTCGGGGGTCTGTGTCTTCGTGACGGGAAGGTGGGAGACTTTGCGC
GGAAAGTCGGAGGCTTAGGGGAAAAAGTGATCCTGGCTGTGGTGAAGAAG
ACCCGCGAACTCAACGACCGTTTTCACATCGCGGATAAGGTGGGAGACTT
TGCGCGGAAAGTCGGAGGCTTAGGGGAAAAAGTGATCCTGGCTGTGGTGA
AGAAGACCCGCGAACTCAACGACCGTTTTCACATCGCGGATAAGGCGAAA
ACCCTTGCCAAGGACACGGGGTCACGAATTCAGAAGGCGGACGAGAAGCG
CGGGTTCAGCAAGAACTTAAAGGCGAGAGCTTCGTCCTTGTGGTTACACA
TCGATGAGGCGAAAACCCTTGCCAAGGACACGGGGTCACGAATTCAGAAG
GCGGACGAGAAGCGCGGGTTCAGCAAGAACTTAAAGGCGAGAGCTTCGTC
CTTGTGGTTACACATCGATGAG
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