prot_H-paniculata_contig23109.6217.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig23109.6217.1
Unique Nameprot_H-paniculata_contig23109.6217.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length112
Homology
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BLAST of mRNA_H-paniculata_contig23109.6217.1 vs. uniprot
Match: D8LTP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP8_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.210e-25
Identity = 54/112 (48.21%), Postives = 75/112 (66.96%), Query Frame = 0 
Query:    1 VVLGAFVAGSLVGIIICAPAFVVVVFGAGLGGLCLRDGKVGDFARKVGGLGEKVILAVVKKTRELNDRFHIADKAKTLAKDTGSRIQKADEKRGFSKNLKARASSLWLHIDE 112
            +V G+F+AG+LVG++ICAPAFVV++FGAG   L   D KVG F+RKVG +   ++LAV +  RE N +  + DKAK  AK+   ++     K G   N+KARASSLW  +D+
Sbjct:   54 IVFGSFIAGALVGVVICAPAFVVLLFGAGAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQVDK 165
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BLAST of mRNA_H-paniculata_contig23109.6217.1 vs. uniprot
Match: D8LTQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ0_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.390e-11
Identity = 41/118 (34.75%), Postives = 65/118 (55.08%), Query Frame = 0 
Query:    1 VVLGAFVAGSLVGIIIC------APAFVVVVFGAGLGGLCLRDGKVGDFARKVGGLGEKVILAVVKKTRELNDRFHIADKAKTLAKDTGSRIQKADEKRGFSKNLKARASSLWLHIDE 112
            +VLG+FVAG+LVG I+C      AP  VV++ GAG       D K G  +R+VG     V LA+ +  RE N ++ +  K +  A++   +++   ++ G    +K RA SLW  +D+
Sbjct:   47 IVLGSFVAGALVGAILCVRVFMFAPTVVVLLCGAGAAVFTKSDSKAGQISREVGKWTCDVFLALFRVVREFNYKYQLTVKVRITAQEAAGKVKAEVQRLGICDGVKTRARSLWEQVDK 164
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BLAST of mRNA_H-paniculata_contig23109.6217.1 vs. uniprot
Match: A0A6H5JUV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV7_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 7.340e-10
Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = 0 
Query:    1 VVLGAFVAGSLVGIIICA------PAFVVVVFGAGLGGLCLRDGKVGDF----------ARKVGGLGEKVILAVVKKTRELNDRFHIADKAKTLAKDTGSRIQKADEKRGFSKNLKARASSLWLHI 110
            ++LG+FVAG+L+G IICA      P  VV++ GAG       D +VG F          +R VG     V LA+ +  RE N ++ +ADK K  A++   +++   ++ G    +K RA SLW  +
Sbjct:   47 IMLGSFVAGALMGAIICARVFMFAPMVVVLLCGAGAAVFTNSDSEVGKFVVRLRWAGQISRGVGKWTSDVFLALFRVVREFNYKYQLADKVKITAQEAARKVKAEVQRIGICDGVKTRARSLWEQV 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23109.6217.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTP8_ECTSI1.210e-2548.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LTQ0_ECTSI1.390e-1134.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUV7_9PHAE7.340e-1034.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..35
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 36..112
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23109contigH-paniculata_contig23109:3..1607 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23109.6217.1mRNA_H-paniculata_contig23109.6217.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig23109 3..1607 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig23109.6217.1 ID=prot_H-paniculata_contig23109.6217.1|Name=mRNA_H-paniculata_contig23109.6217.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
VVLGAFVAGSLVGIIICAPAFVVVVFGAGLGGLCLRDGKVGDFARKVGGL
GEKVILAVVKKTRELNDRFHIADKAKTLAKDTGSRIQKADEKRGFSKNLK
ARASSLWLHIDE
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