mRNA_H-paniculata_contig2306.6192.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2306.6192.1
Unique NamemRNA_H-paniculata_contig2306.6192.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2306.6192.1 vs. uniprot
Match: D8LGX6_ECTSI (PseudoU_synth_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGX6_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 9.810e-125
Identity = 230/519 (44.32%), Postives = 294/519 (56.65%), Query Frame = 2
Query:  248 ATNTANVPRRSSRGASETTLVRGRKVVHIAT---------SHHCGGEMGAARTICDVISIEAGVSLDRADELVRFGAVYIGEDVRP---HASSGGDSQGSRRGGRGDRENRQGGIAGMTDNQHRKMEAKRASGQLPFEGTSFDHMHLRRLRHREGSNPPPAGSYLRVHCDPRLFPVTDRTTWIDQVVVLTDDYIVVNKPAGMPTVPTIDNVIQSVLHQAGLVVARVSGYSDGDADNLPPMHAVSRLDVCTSGLVVFARNKLAAGKLNNMFSARQVTKHYLALLIPGPPIRTGSLAHCCRGKGFDGMRRAKIYADFDPELLEGKKWGGHWQEAHSTVITCVPAAGPTVTAAV---------------------------------------------AADRAAQRLQSSDTLTS-----LGAGKEQQQDGGHPAHLCLLKLDTGRNHQLRMQLAAMGAGIVGDTQYRGIVGRLHRGVPEDDRTDIFGQEPATIALTAARLEFEWNSERVVYTVKPPTWAI 1618
            A+++A V   +   ++ETT     +VVHIAT             G E  A  TI +++S    VS +R  ELV+FG+VYIGE V     H  S               + +Q  IA        + +A +++ Q PF GTSF+HM LRRL   E  N PP G+YLRVHCDPR FP +    W  ++V   +D++VV+KPAG+PTVPTIDN +Q+ + QA L VA   G   G     PP+HAVSRLDVCTSG+VVFAR+K AA +LN +F AR+V K YLALL PGP + TGS+AHCCR K FDG RR +IYADFD ELL G KWGG WQEA STV+ C PA G                                                    AA R  +  +  D  T+       A +  +++G H  HLC ++L+TGR HQLR+QLAAMG+ IVGDT+YRG+VGR+HRG+  DD T  FGQEP  IAL AAR+EFEW    VV++   P+WA+
Sbjct:   13 ASSSAAVTGIAEGCSAETTYQGEHRVVHIATPGAPPPWLEDEEQGEEQRA--TIAELVSHFGAVSRERGVELVKFGSVYIGEVVDTNWRHPPS---------------KEKQMTIAAA------RKKALKSADQAPFRGTSFEHMRLRRLHPWESGNFPPHGAYLRVHCDPRTFPASQVMDWSKRIVHKNEDFVVVDKPAGVPTVPTIDNGVQNCVFQASLAVA---GMPPGSRSLPPPLHAVSRLDVCTSGIVVFARHKEAAKQLNELFRARRVKKRYLALLTPGPAVPTGSMAHCCRSKAFDGSRRPRIYADFDEELLAGDKWGGAWQEARSTVLLCAPATGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEEIEAAARGGEGREEEDGSTAPDAEATTAAEAAREEGDHAPHLCAMELETGRTHQLRLQLAAMGSAIVGDTRYRGVVGRVHRGLRVDDDTSRFGQEPEAIALQAARIEFEWQGRTVVFSTDRPSWAL 505          
BLAST of mRNA_H-paniculata_contig2306.6192.1 vs. uniprot
Match: A0A835YKX4_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKX4_9STRA)

HSP 1 Score: 196 bits (499), Expect = 2.140e-53
Identity = 123/307 (40.07%), Postives = 159/307 (51.79%), Query Frame = 2
Query:  695 GSYLRVHCDPRLFPVTDRTTWIDQVVVLTDDYIVVNKPAGMPTVPTIDNVIQSVLHQAGLVVARVSGYSDGDADNLPPMHAVSRLDVCTSGLVVFARNKLAAGKLNNMFSARQVTKHYLALLIPGPPIRTGSLAHCCRGKGFDGMRRAKIYADFDPELLEGKKWGGHWQEAHSTVITCVPAAGPTVTAAVAADRAAQRLQSSDTLTSLGAGKEQQQDGGHPAHLCLLKLDTGRNHQLRMQLAAMGAGIVGDTQYRGIVGRLHRGVPEDDRTDIFGQEPATIALTAARLEFEWNSERVVYTVKPPTWA 1615
            G+YLR+H  PR F       W  +V+    DY+V++KPAG+P+VPT DN   S L +A   +        GDA    P+HAVSRLDVCTSG++VFAR+  AA  L+   SAR V K Y  ++  G  +  G L HCC  +   G  + +IYA FD     G   G  W+ A   V++                                       D G  A    + L TGR HQ+R+QLAA+GAGIVGD++Y  I+G++H G    DRTD FG EP  I L AA LEF+W  ERV YT +PP WA
Sbjct:  150 GTYLRLHAAPRRFARAAAADWRARVLHACADYVVIDKPAGVPSVPTTDNAADSALWRARAALG-------GDAAR--PLHAVSRLDVCTSGVLVFARSPAAAAALSGAISARAVRKVY-RVVTTGAEVPLGVLRHCCSTRARTGDAQPRIYAPFDAAKACGD--GSGWRLAELEVLS--------------------------------------HDRGSGAST--ISLMTGRTHQIRLQLAALGAGIVGDSRYADIIGKVHDGTAASDRTDWFGPEPEEIRLHAAALEFDWGGERVCYTAEPP-WA 403          
BLAST of mRNA_H-paniculata_contig2306.6192.1 vs. uniprot
Match: A0A5J4Z0G8_PORPP (RNA pseudouridine synthase 6, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0G8_PORPP)

HSP 1 Score: 162 bits (409), Expect = 2.790e-40
Identity = 112/331 (33.84%), Postives = 159/331 (48.04%), Query Frame = 2
Query:  695 GSYLRVHCDPRLFPVTDRTTWIDQVVVLTD-DYIVVNKPAGMPTVPTIDNVIQSVLHQAGLVVARVSGYSDGDADNLPPMHAVSRLDVCTSGLVVFARNKLAAGKLNNMFSARQVTKHYLALLIPGPPIRT-----GSLAHCCRGKGFDGMRRAKIYA------DFDPELL---------EGKKWGGHWQEAHSTVITCVPAAGPTVTAAVAADRAAQRLQSSDTLTSLGAGKEQQQDGGHPAHLCLLKLD--TGRNHQLRMQLAAMGAGIVGDTQYRGIVGRLHRGVPEDDRTDIFGQEPATIALTAARLEFE--WNSERVVYTVKPPTW 1612
            G Y R+H +P  +P      W D++V   D D++ V+KP  +P+VPT+ NV++    Q    +   +           P+HAVSRLDVCTSG++VFAR+K AA  LN     R V K Y  LL+PGP  R      G + H  R    D + + +IY       D D  LL         E  K GG W  A   ++T               +R   R + S+ +T       Q    G        +++  TGR HQLR+Q A++G  + GD++YR + GR+HRGVPEDD  D+FG EP  ++L A+   F    N  R + +   P W
Sbjct:  141 GMYFRLHANPARYPDAHAYVWKDRIVYNGDNDFVAVDKPPNLPSVPTLVNVVECARTQVECALECPA-----------PLHAVSRLDVCTSGVLVFARHKRAAAHLNEQIRNRSVKKRY-TLLVPGPIPREIIQKDGRVLHAARTNLPDNIPKPRIYRLLDLEKDLDAALLQDESYSTPLEAPKIGGAWHVAAMRILT---------------EREMNRAELSEVVTM------QADHAGIDVRYTEYEVELLTGRTHQLRLQFASLGLPLFGDSRYRPVSGRVHRGVPEDDNLDMFGPEPNRVSLCASVFHFNDLKNQPREIASGLAPWW 438          
BLAST of mRNA_H-paniculata_contig2306.6192.1 vs. uniprot
Match: A0A812T6T9_9DINO (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812T6T9_9DINO)

HSP 1 Score: 109 bits (272), Expect = 1.250e-21
Identity = 82/298 (27.52%), Postives = 132/298 (44.30%), Query Frame = 2
Query:  695 GSYLRVHCDPRLFP--VTDRTTWIDQVVVLTDDYIVVNKPAGMPTVPTIDNVIQSVLHQAGLVVARVSGYSDGDADNLPPMHAVSRLDVCTSGLVVFARNKLAAGKLNNMFSARQVTKHYLALLIPGPPIRTGSLAHCCRGKGFDGMRRAKIYADFDPELLEGKKWGGHWQEAHSTVITCVPAAGPTVTAAVAADRAAQRLQSSDTLTSLGAGKEQQQDGGHPAHLCLLKLDTGRNHQLRMQLAAMGAGIVGDTQYRGIVGRLHRGVPEDDRTDIFGQ-----EPATIALTAARLEFE 1567
            G  LRVH +P+ +     +   W D+++ ++ +Y+VV+KPAG+P  P + N  + ++      ++  S  S G +     + A  RLDV TSGL + AR++ AA +   +    QVTK YLA++  G   +T  L          G    ++ A     + + +     W+ A +T+++                            TS+  G ++           LL LDTGR HQ+R QLA+MGA +V D  Y  +   L RG  +D+  +   Q     E   I L   +L FE
Sbjct:  118 GGELRVHTEPKRYRRCSAEGRDWADRLLYVSPEYVVVDKPAGVPCAPHVSNGREWLVPLVAAALSIASRESRGKSSGGEDLVACQRLDVATSGLTLLARSREAAERFRKLLCDGQVTKRYLAVVKTGVKAKTDGLLEHWLSDAVFGRPAPRLVAPLSAPVQDSRH---KWRNARTTILS---------------------------TTSVEDGSQEM----------LLDLDTGRTHQIRAQLASMGAPVVNDGLYSHMANFLWRGPCDDEVAENLVQSATSSEDVDIGLQCTQLSFE 375          
BLAST of mRNA_H-paniculata_contig2306.6192.1 vs. uniprot
Match: A0A812V5M1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812V5M1_9DINO)

HSP 1 Score: 110 bits (274), Expect = 2.580e-21
Identity = 82/298 (27.52%), Postives = 132/298 (44.30%), Query Frame = 2
Query:  695 GSYLRVHCDPRLFP--VTDRTTWIDQVVVLTDDYIVVNKPAGMPTVPTIDNVIQSVLHQAGLVVARVSGYSDGDADNLPPMHAVSRLDVCTSGLVVFARNKLAAGKLNNMFSARQVTKHYLALLIPGPPIRTGSLAHCCRGKGFDGMRRAKIYADFDPELLEGKKWGGHWQEAHSTVITCVPAAGPTVTAAVAADRAAQRLQSSDTLTSLGAGKEQQQDGGHPAHLCLLKLDTGRNHQLRMQLAAMGAGIVGDTQYRGIVGRLHRGVPEDDRTDIFGQ-----EPATIALTAARLEFE 1567
            G  LRVH +P+ +     +   W D+++ ++ +Y+VV+KPAG+P  P + N  + ++      ++  S  S G +     + A  RLDV TSGL + AR++ AA +   +    QVTK YLA++  G   +T  L          G    ++ A     + + +     W+ A +T+++                            TS+  G ++           LL LDTGR HQ+R QLA+MGA +V D  Y  +   L RG  +D+  +   Q     E   I L   +L FE
Sbjct:  107 GGELRVHTEPKRYRRCSAEGRDWADRLLYVSPEYVVVDKPAGVPCAPHVSNGREWLVPLVAAALSIASRESRGKSSGGEDLVACQRLDVATSGLTLLARSREAAARFRKLLCDGQVTKRYLAVVKTGVKAKTDGLLEHWLSDAVFGRPAPRLVAPLSAPVQDSRH---KWRNARTTILS---------------------------TTSVEDGSQEM----------LLDLDTGRTHQIRAQLASMGAPVVNDGLYSHMANFLWRGPCDDEVAENLVQSATSSEDGDIGLQCTQLSFE 364          
BLAST of mRNA_H-paniculata_contig2306.6192.1 vs. uniprot
Match: A0A1R3I2E3_COCAP (Pseudouridine synthase, RsuA/RluB/C/D/E/F n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3I2E3_COCAP)

HSP 1 Score: 107 bits (266), Expect = 5.660e-21
Identity = 93/332 (28.01%), Postives = 135/332 (40.66%), Query Frame = 2
Query:  692 AGSYLRVHCDPRLFPVTDRTTWIDQVVVLTDDYIVVNKPAGMPTVPTIDNVIQSVLHQAGLVVARVSGYSDGDADNLPPMHAVSRLDVCTSGLVVFARNKLAAGKLNNMFSARQVTKHYLALLIPGPPIRTGSLAHCCRGKGFDGMRRAKIYADFDPELLEGKKWGGHWQEAHSTVITCVPAAGPTVTAAVAADRAAQRLQSSDTLTSLGAGKEQQQDGGHP----AHLCLLKLDTGRNHQLRMQLAAMGAGIVGDTQYRGIV------------GRLHRGVPEDDRTDI-------FGQEPATIALTAARLEFEWNSERVVYTVKPPTWAI 1618
            AG+YLRVH  P+ FP      W  +++ +TD Y+V++KPAG     T DN+ +S          R  G+S        P+    ++D CT G VVFAR K      +     ++V K YLAL     P+ TG + H  R      M    +  DF    ++G      W      V+ C     P                  D++       E   D G P    A+ C + L TGR HQ+R QLAA GA IVGD+ Y                G+  +   EDD+          +G+EP+ +A+     +  W+     Y  + P W +
Sbjct:  191 AGTYLRVHVHPKRFPRCYAIDWKSRIIAVTDSYVVLDKPAGTSVGGTTDNIEES----CATFATRALGFSI-------PLKTTHQIDNCTEGCVVFARTKEYCSVFHGKIREKKVKKLYLALA--AAPVPTGIITHYMRPIN---MAPRLVSEDF----IKG------WYLCQLEVLECKEVPWP------------------DSVVQENYCIE---DSGWPSKDYAYECKINLLTGRTHQIRAQLAACGAPIVGDSMYMPATIAEMANPGLNPFGKYKKYTTEDDKEIAIKEWIAQYGKEPS-VAIGLQACQISWDEGEHCYEARSPWWRL 474          
BLAST of mRNA_H-paniculata_contig2306.6192.1 vs. uniprot
Match: L1JPX0_GUITC (PseudoU_synth_2 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JPX0_GUITC)

HSP 1 Score: 102 bits (255), Expect = 1.490e-20
Identity = 85/289 (29.41%), Postives = 129/289 (44.64%), Query Frame = 2
Query:  695 GSYLRVHCDPRLFPVTDRTTWIDQVVVLTDDYIVVNKPAGMPTVPTIDNVIQSVLHQAGLVVARVSGYSDGDADNLPPMHAVSRLDVCTSGLVVFARNKLAAGKLNNMFSARQVTKHYLALLIPGPPIRTGSLAHCCRGKGFDGMRRAKIYADFDPELLEGKKWGGHWQEAHSTVITCVPAAGPTVTAAVAADRAAQRLQSSDTLTSLGAGKEQQQDGGHPAHLCLLKLDTGRNHQLRMQLAAMGAGIVGDTQYRGIVGRLHRGVPE--DDRTDIFGQEPATIALTAAR 1555
            GSY+RVH  P+      +  W  +V+  + D+IV++KP G+P++ TIDN ++ V+ Q    V ++   S         +   SRLDVCT+G+++FA+ +    K N   S R+  K YL L     P            +G D   R  +         EG      WQ+A   ++ C                          LT L     +QQ G        ++L TGR HQ+R+Q AA+GA ++GDT+Y    G L + V +   D + +FG +P  I L A R
Sbjct:   61 GSYVRVHAQPKRCLSVYKIDWSARVIRESQDFIVIDKPPGVPSLTTIDNGVECVMSQ----VEKMRNIS---------LMPTSRLDVCTAGVLIFAKTRDFCLKTNKAMSERRCDKVYLLLSERELP------------RGEDLRSRQDLQE-------EG------WQDAVLEILDC-----------------------RCLLTFLQPFDLKQQGGRRKVFEYSVRLITGRTHQIRLQFAALGAPVLGDTRYTPAAGLLFQSVDDAIGDGSRVFGPDPDVIFLQARR 288          
BLAST of mRNA_H-paniculata_contig2306.6192.1 vs. uniprot
Match: A0A3M7KTQ2_AUXPR (PseudoU_synth_2 domain-containing protein (Fragment) n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KTQ2_AUXPR)

HSP 1 Score: 103 bits (257), Expect = 2.780e-20
Identity = 89/291 (30.58%), Postives = 126/291 (43.30%), Query Frame = 2
Query:  689 PAGSYLRVHCDPRLFPVTDRTTWIDQVVVLTDDYIVVNKPAGMPTVPTIDNVIQSVLHQAGLVVARVSGYSDGDADNLPPMHAVSRLDVCTSGLVVFARNKLAAGKLNNMFSARQVTKHYLALLIPGPPIRTGSLAHCCRGKGFDGMRRAKIYADFDPELLEGKKWGGHWQEAHSTVITCVPAAGPTVTAAVAADRAAQRLQSSDTLTSLGAGKEQQQDGGHPAHLCLLKLDTGRNHQLRMQLAAMGAGIVGDTQYRGIVGRLHRGVPEDDRTDIFGQEPA-TIALTAARL 1558
            PAG+YLRVH   + FP  D   W  +++ +TD++++VNKP G+P   T+DN  +SV+ QA                   P+H + RLD CT G+VV  R   A    ++   + +V K Y  L     P   G L H                      L  G +  G     HS V    P  G       A     +  +S+  L S+  G         P   C+++L TGR HQ+R Q+AA+G  +VGDT Y  +  R  +   E    D+  QEP   I L AAR+
Sbjct:  104 PAGAYLRVHAHVKRFPAADCADWAARLLAVTDEHVIVNKPCGVPVPITVDNARESVVTQAS-----------------QPLHIIHRLDRCTEGVVVLGRGVQAVRAFHDAQHSGRVQKTYRLLCHGSQPPPLGLLTH---------------------HLAVGTRIPGC--PIHS-VAHDEPRPGT-----AACSLMIESAESAPALESVHGG---------PVIDCVVRLVTGRTHQIRAQMAAVGHPLVGDTLYGPLARRPGQAPVEVAMGDL--QEPELAIGLQAARM 337          
BLAST of mRNA_H-paniculata_contig2306.6192.1 vs. uniprot
Match: UPI000C1CEBF2 (RNA pseudouridine synthase 6, chloroplastic isoform X1 n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CEBF2)

HSP 1 Score: 103 bits (257), Expect = 8.690e-20
Identity = 90/332 (27.11%), Postives = 138/332 (41.57%), Query Frame = 2
Query:  692 AGSYLRVHCDPRLFPVTDRTTWIDQVVVLTDDYIVVNKPAGMPTVPTIDNVIQSVLHQAGLVVARVSGYSDGDADNLPPMHAVSRLDVCTSGLVVFARNKLAAGKLNNMFSARQVTKHYLALLIPGPPIRTGSLAHCCRGKGFDGMRRAKIYADF-DPELLEGKKWGGHWQEAHSTVITCVPAAGPTVTAAVAADRAAQRLQSSDTLTSLGAGKEQQQDGGHP----AHLCLLKLDTGRNHQLRMQLAAMGAGIVGDTQYRGIV------------GRLHRGVPEDDRTDIF--------GQEPATIALTAARLEFEWNSERVVYTVKPPTW 1612
            AG+YLRVH  P+ FP      W  +++ +TD Y+V++KPAG     T DN+ +S +  A    +R  G    DA    P+    ++D CT G VV +R K      +     ++V K YLAL     P+  G + H  R         +++  D   P+ ++G      W      V+ C     P                  D LT     K   +D G P    A+ C + L TGR HQ+R QLAA GA +VGD+ Y                G+  +    ++  ++         G+EP+ +A+     +  W+    VY  + P W
Sbjct:  198 AGTYLRVHVHPKRFPRCYEIDWRSRIIAVTDSYVVLDKPAGTSVGGTTDNIEESCVTFA----SRALGL---DA----PLRTTHQIDNCTEGCVVLSRTKEYCSVFHGKIREKKVKKLYLALA--ADPVSIGVITHYMRPINIAPRLVSEVKPDVVQPDFVKG------WYLCRLEVLECKKVPWP------------------DALTEK---KYSIEDCGWPGKDFAYECKIDLLTGRTHQIRAQLAACGAPLVGDSMYMPAAIAEMRKPGLNPFGKYKKAYATENDKELHVEEWIACHGKEPS-VAIGLQACQISWDEGEHVYEARSPWW 488          
BLAST of mRNA_H-paniculata_contig2306.6192.1 vs. uniprot
Match: A0A4Y7JX04_PAPSO (PseudoU_synth_2 domain-containing protein n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JX04_PAPSO)

HSP 1 Score: 102 bits (254), Expect = 1.940e-19
Identity = 90/327 (27.52%), Postives = 138/327 (42.20%), Query Frame = 2
Query:  692 AGSYLRVHCDPRLFPVTDRTTWIDQVVVLTDDYIVVNKPAGMPTVPTIDNVIQSVLHQAGLVVARVSGYSDGDADNLPPMHAVSRLDVCTSGLVVFARNKLAAGKLNNMFSARQVTKHYLALLIPGPPIRTGSLAHCCRGKGFDGMRRAKIYADFDPELLEGKKWGGHWQEAHSTVITCVPAAGPTVTAAVAADRAAQRLQSSDTLTSLGAGKEQQQDGGHPAHLCLLKLDTGRNHQLRMQLAAMGAGIVGDTQY--RGIVGRLHRGV-----------PEDDRTDIF-------GQEPATIALTAARLEFEWNSERVVYTVKPPTW 1612
            AG+YLRVH  P+ FP      W  +++ +T+ Y++++KPAG     T DN+ +S          R  G +D       P+    ++D CT G VV AR K      +     ++V K YLAL     P+  G + H         MR   +     P L+      G W      V+ C     PT +         Q+L+    + + G  K+        A+ C + L TG+ HQ+R QLAA+G+ IVGD+ Y    I   ++ G+            ED+RT          G+EP+ IA+     +  W+     Y  + P W
Sbjct:  196 AGTYLRVHIHPKRFPRCYEIDWKSRIIAVTESYVILDKPAGTSVGGTTDNIEES----CATFATRALGLTD-------PLWTTHQIDNCTEGCVVLARTKQYCSVFHGKIREKKVKKLYLALA--AAPVPVGVVTHY--------MRPVNVA----PRLVSKDITKG-WHMCQLEVLECKEVPWPTASTE-------QKLR----IDNCGWPKKD------VAYECKINLLTGKTHQVRAQLAAIGSPIVGDSMYIPAAIAEAMNPGLNPFGEDGKHYESEDERTKAVEEWMAQHGKEPS-IAIGLQACQISWDDGEHFYEARTPWW 478          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2306.6192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGX6_ECTSI9.810e-12544.32PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A835YKX4_9STRA2.140e-5340.07Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A5J4Z0G8_PORPP2.790e-4033.84RNA pseudouridine synthase 6, chloroplastic n=1 Ta... [more]
A0A812T6T9_9DINO1.250e-2127.52Hypothetical protein n=2 Tax=Symbiodinium TaxID=29... [more]
A0A812V5M1_9DINO2.580e-2127.52Hypothetical protein n=1 Tax=Symbiodinium necroapp... [more]
A0A1R3I2E3_COCAP5.660e-2128.01Pseudouridine synthase, RsuA/RluB/C/D/E/F n=1 Tax=... [more]
L1JPX0_GUITC1.490e-2029.41PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A3M7KTQ2_AUXPR2.780e-2030.58PseudoU_synth_2 domain-containing protein (Fragmen... [more]
UPI000C1CEBF28.690e-2027.11RNA pseudouridine synthase 6, chloroplastic isofor... [more]
A0A4Y7JX04_PAPSO1.940e-1927.52PseudoU_synth_2 domain-containing protein n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2306contigH-paniculata_contig2306:11798..13806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score389.0
Seed ortholog evalue3.6e-105
Seed eggNOG ortholog2880.D8LGX6
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003824,GO:0006139,GO:0006206,GO:0006213,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009116,GO:0009119,GO:0009451,GO:0009982,GO:0009987,GO:0016070,GO:0016853,GO:0016866,GO:0018130,GO:0019438,GO:0019858,GO:0034641,GO:0034654,GO:0043094,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0046087,GO:0046131,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090304,GO:1901135,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657
EggNOG free text desc.pseudouridine synthase activity
EggNOG OGsCOG0564@1,KOG1919@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1763
Cds size1683
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2306.6192.1prot_H-paniculata_contig2306.6192.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2306 11838..13766 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.5428417-UTR-H-paniculata_contig2306:11797..118371622929648.5428417-UTR-H-paniculata_contig2306:11797..11837Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2306 11798..11837 +
1691480950.6387217-UTR-H-paniculata_contig2306:11797..118371691480950.6387217-UTR-H-paniculata_contig2306:11797..11837Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2306 11798..11837 +
1622929648.6069114-UTR-H-paniculata_contig2306:13766..138061622929648.6069114-UTR-H-paniculata_contig2306:13766..13806Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2306 13767..13806 +
1691480950.6692297-UTR-H-paniculata_contig2306:13766..138061691480950.6692297-UTR-H-paniculata_contig2306:13766..13806Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2306 13767..13806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.5712502-CDS-H-paniculata_contig2306:11837..126021622929648.5712502-CDS-H-paniculata_contig2306:11837..12602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2306 11838..12602 +
1691480950.6503701-CDS-H-paniculata_contig2306:11837..126021691480950.6503701-CDS-H-paniculata_contig2306:11837..12602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2306 11838..12602 +
1622929648.5875082-CDS-H-paniculata_contig2306:12848..137661622929648.5875082-CDS-H-paniculata_contig2306:12848..13766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2306 12849..13766 +
1691480950.6593354-CDS-H-paniculata_contig2306:12848..137661691480950.6593354-CDS-H-paniculata_contig2306:12848..13766Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2306 12849..13766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2306.6192.1

>prot_H-paniculata_contig2306.6192.1 ID=prot_H-paniculata_contig2306.6192.1|Name=mRNA_H-paniculata_contig2306.6192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=561bp
MVVPLSTTVLAATVAALCPIPVEAFLGMGRLAMLSSPTSVTKPSTSSTET
RQAETFMSMKIVNDPTAVGATNTANVPRRSSRGASETTLVRGRKVVHIAT
SHHCGGEMGAARTICDVISIEAGVSLDRADELVRFGAVYIGEDVRPHASS
GGDSQGSRRGGRGDRENRQGGIAGMTDNQHRKMEAKRASGQLPFEGTSFD
HMHLRRLRHREGSNPPPAGSYLRVHCDPRLFPVTDRTTWIDQVVVLTDDY
IVVNKPAGMPTVPTIDNVIQSVLHQAGLVVARVSGYSDGDADNLPPMHAV
SRLDVCTSGLVVFARNKLAAGKLNNMFSARQVTKHYLALLIPGPPIRTGS
LAHCCRGKGFDGMRRAKIYADFDPELLEGKKWGGHWQEAHSTVITCVPAA
GPTVTAAVAADRAAQRLQSSDTLTSLGAGKEQQQDGGHPAHLCLLKLDTG
RNHQLRMQLAAMGAGIVGDTQYRGIVGRLHRGVPEDDRTDIFGQEPATIA
LTAARLEFEWNSERVVYTVKPPTWAILEKPSAEESTGGSLVDVEGEDNVE
AVGTAVDAVR*
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mRNA from alignment at H-paniculata_contig2306:11798..13806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2306.6192.1 ID=mRNA_H-paniculata_contig2306.6192.1|Name=mRNA_H-paniculata_contig2306.6192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2009bp|location=Sequence derived from alignment at H-paniculata_contig2306:11798..13806+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTCAGCCAATAGCAGTGCCGACACCAAGCACAAGCTTCATGGTCGTCC CCTTATCTACCACGGTCCTGGCAGCTACGGTTGCTGCTCTTTGTCCAATC CCTGTCGAGGCATTTCTCGGCATGGGAAGACTCGCAATGTTGTCCTCGCC AACCTCAGTCACGAAACCATCCACATCGAGTACAGAAACAAGACAGGCGG AGACGTTCATGTCCATGAAGATAGTTAACGATCCTACTGCGGTGGGCGCT ACTAACACCGCCAACGTGCCCAGACGTTCTAGTAGAGGCGCGTCAGAAAC GACCCTTGTCAGAGGTCGAAAAGTGGTGCATATCGCGACGAGTCATCATT GTGGTGGCGAGATGGGCGCAGCTCGGACGATATGCGATGTGATCTCGATC GAAGCCGGTGTTAGTTTGGATCGCGCGGACGAACTGGTCAGGTTCGGCGC AGTGTACATAGGGGAGGACGTACGACCGCATGCAAGCAGTGGCGGCGACA GCCAAGGGTCTCGGCGAGGGGGGCGAGGTGATCGCGAGAACAGGCAAGGT GGAATTGCAGGTATGACCGATAACCAACACAGGAAAATGGAGGCGAAGAG AGCGTCGGGACAGCTGCCGTTCGAGGGGACCAGTTTCGACCACATGCACC TACGCCGACTACGCCACAGAGAGGGCTCGAATCCGCCTCCTGCGGGCTCC TACCTGCGAGTTCATTGCGACCCTCGATTGTTTCCCGTGACGGACAGGAC CACTTGGATAGACCAGGTCGTGGTTCTAACAGACGACTATATCGTTGTAA ACAAGGTTAGTATAGCCAGAGATTCGTTGTTAAAGTCCGACGCGTCGTAC ACGATATTCGTTCAAACAAATGAACAGTAGGAGATGTGGCGGAGTAGCTG TACAACTGCCATGTTGGAGCTTCTAATAGCGAAAATATCACCCCCGCCGA TTGCAACATAAATGTATTATAGCCATACCTTTTATCCCACCCACTCTTGT CCACCCCACGCGCGCTCCCGGCTTTCTGTGCTCGCCTTACCCACAACCCA GCCGGCTGGGATGCCAACCGTTCCCACGATTGACAATGTTATTCAAAGCG TGCTGCACCAGGCGGGGCTCGTGGTTGCCAGGGTGTCCGGCTACAGCGAT GGGGACGCGGACAACCTGCCACCAATGCATGCCGTGTCGCGTTTAGACGT GTGTACATCGGGACTCGTTGTATTCGCGAGGAACAAACTTGCCGCGGGCA AGCTCAACAATATGTTCAGCGCAAGGCAAGTCACGAAGCACTACCTCGCG TTGCTCATCCCTGGCCCTCCGATACGAACTGGATCCTTAGCACACTGCTG TCGCGGGAAGGGCTTTGATGGTATGCGGCGAGCCAAGATCTACGCCGACT TCGATCCGGAGCTGCTGGAAGGGAAGAAGTGGGGCGGTCATTGGCAGGAG GCTCACTCGACCGTTATCACGTGTGTCCCGGCGGCAGGACCCACGGTAAC AGCCGCGGTAGCCGCCGATCGAGCAGCTCAACGGTTACAAAGCTCAGACA CGCTGACATCGCTGGGCGCAGGGAAAGAACAACAACAAGATGGTGGCCAT CCAGCCCACCTTTGCCTCTTGAAGCTCGACACGGGTCGAAATCACCAGCT CCGAATGCAACTTGCGGCGATGGGCGCTGGCATTGTGGGCGATACGCAGT ACCGGGGGATTGTGGGCAGATTACATCGCGGTGTGCCAGAGGATGACAGG ACAGACATTTTTGGGCAAGAGCCGGCGACCATCGCATTGACGGCCGCGCG ATTAGAGTTTGAATGGAATTCGGAGCGTGTAGTGTACACCGTCAAGCCGC CTACATGGGCGATTTTGGAGAAGCCGTCGGCCGAGGAGTCGACGGGCGGG AGTCTCGTTGACGTTGAGGGTGAAGATAATGTAGAGGCCGTAGGAACAGC CGTTGACGCGGTGAGGTGATGTGTAAAATACATATCAAGGCGATGACATT GTATTAAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2306:11798..13806+

>mRNA_H-paniculata_contig2306.6192.1 ID=mRNA_H-paniculata_contig2306.6192.1|Name=mRNA_H-paniculata_contig2306.6192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3366bp|location=Sequence derived from alignment at H-paniculata_contig2306:11798..13806+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGTCCCCTTATCTACCACGGTCCTGGCAGCTACGGTTGCTGCTCT
TTGTCCAATCCCTGTCGAGGCATTTCTCGGCATGGGAAGACTCGCAATGT
TGTCCTCGCCAACCTCAGTCACGAAACCATCCACATCGAGTACAGAAACA
AGACAGGCGGAGACGTTCATGTCCATGAAGATAGTTAACGATCCTACTGC
GGTGGGCGCTACTAACACCGCCAACGTGCCCAGACGTTCTAGTAGAGGCG
CGTCAGAAACGACCCTTGTCAGAGGTCGAAAAGTGGTGCATATCGCGACG
AGTCATCATTGTGGTGGCGAGATGGGCGCAGCTCGGACGATATGCGATGT
GATCTCGATCGAAGCCGGTGTTAGTTTGGATCGCGCGGACGAACTGGTCA
GGTTCGGCGCAGTGTACATAGGGGAGGACGTACGACCGCATGCAAGCAGT
GGCGGCGACAGCCAAGGGTCTCGGCGAGGGGGGCGAGGTGATCGCGAGAA
CAGGCAAGGTGGAATTGCAGGTATGACCGATAACCAACACAGGAAAATGG
AGGCGAAGAGAGCGTCGGGACAGCTGCCGTTCGAGGGGACCAGTTTCGAC
CACATGCACCTACGCCGACTACGCCACAGAGAGGGCTCGAATCCGCCTCC
TGCGGGCTCCTACCTGCGAGTTCATTGCGACCCTCGATTGTTTCCCGTGA
CGGACAGGACCACTTGGATAGACCAGGTCGTGGTTCTAACAGACGACTAT
ATCGTTGTAAACAAGATGGTCGTCCCCTTATCTACCACGGTCCTGGCAGC
TACGGTTGCTGCTCTTTGTCCAATCCCTGTCGAGGCATTTCTCGGCATGG
GAAGACTCGCAATGTTGTCCTCGCCAACCTCAGTCACGAAACCATCCACA
TCGAGTACAGAAACAAGACAGGCGGAGACGTTCATGTCCATGAAGATAGT
TAACGATCCTACTGCGGTGGGCGCTACTAACACCGCCAACGTGCCCAGAC
GTTCTAGTAGAGGCGCGTCAGAAACGACCCTTGTCAGAGGTCGAAAAGTG
GTGCATATCGCGACGAGTCATCATTGTGGTGGCGAGATGGGCGCAGCTCG
GACGATATGCGATGTGATCTCGATCGAAGCCGGTGTTAGTTTGGATCGCG
CGGACGAACTGGTCAGGTTCGGCGCAGTGTACATAGGGGAGGACGTACGA
CCGCATGCAAGCAGTGGCGGCGACAGCCAAGGGTCTCGGCGAGGGGGGCG
AGGTGATCGCGAGAACAGGCAAGGTGGAATTGCAGGTATGACCGATAACC
AACACAGGAAAATGGAGGCGAAGAGAGCGTCGGGACAGCTGCCGTTCGAG
GGGACCAGTTTCGACCACATGCACCTACGCCGACTACGCCACAGAGAGGG
CTCGAATCCGCCTCCTGCGGGCTCCTACCTGCGAGTTCATTGCGACCCTC
GATTGTTTCCCGTGACGGACAGGACCACTTGGATAGACCAGGTCGTGGTT
CTAACAGACGACTATATCGTTGTAAACAAGCCGGCTGGGATGCCAACCGT
TCCCACGATTGACAATGTTATTCAAAGCGTGCTGCACCAGGCGGGGCTCG
TGGTTGCCAGGGTGTCCGGCTACAGCGATGGGGACGCGGACAACCTGCCA
CCAATGCATGCCGTGTCGCGTTTAGACGTGTGTACATCGGGACTCGTTGT
ATTCGCGAGGAACAAACTTGCCGCGGGCAAGCTCAACAATATGTTCAGCG
CAAGGCAAGTCACGAAGCACTACCTCGCGTTGCTCATCCCTGGCCCTCCG
ATACGAACTGGATCCTTAGCACACTGCTGTCGCGGGAAGGGCTTTGATGG
TATGCGGCGAGCCAAGATCTACGCCGACTTCGATCCGGAGCTGCTGGAAG
GGAAGAAGTGGGGCGGTCATTGGCAGGAGGCTCACTCGACCGTTATCACG
TGTGTCCCGGCGGCAGGACCCACGGTAACAGCCGCGGTAGCCGCCGATCG
AGCAGCTCAACGGTTACAAAGCTCAGACACGCTGACATCGCTGGGCGCAG
GGAAAGAACAACAACAAGATGGTGGCCATCCAGCCCACCTTTGCCTCTTG
AAGCTCGACACGGGTCGAAATCACCAGCTCCGAATGCAACTTGCGGCGAT
GGGCGCTGGCATTGTGGGCGATACGCAGTACCGGGGGATTGTGGGCAGAT
TACATCGCGGTGTGCCAGAGGATGACAGGACAGACATTTTTGGGCAAGAG
CCGGCGACCATCGCATTGACGGCCGCGCGATTAGAGTTTGAATGGAATTC
GGAGCGTGTAGTGTACACCGTCAAGCCGCCTACATGGGCGATTTTGGAGA
AGCCGTCGGCCGAGGAGTCGACGGGCGGGAGTCTCGTTGACGTTGAGGGT
GAAGATAATGTAGAGGCCGTAGGAACAGCCGTTGACGCGGTGAGGTGACC
GGCTGGGATGCCAACCGTTCCCACGATTGACAATGTTATTCAAAGCGTGC
TGCACCAGGCGGGGCTCGTGGTTGCCAGGGTGTCCGGCTACAGCGATGGG
GACGCGGACAACCTGCCACCAATGCATGCCGTGTCGCGTTTAGACGTGTG
TACATCGGGACTCGTTGTATTCGCGAGGAACAAACTTGCCGCGGGCAAGC
TCAACAATATGTTCAGCGCAAGGCAAGTCACGAAGCACTACCTCGCGTTG
CTCATCCCTGGCCCTCCGATACGAACTGGATCCTTAGCACACTGCTGTCG
CGGGAAGGGCTTTGATGGTATGCGGCGAGCCAAGATCTACGCCGACTTCG
ATCCGGAGCTGCTGGAAGGGAAGAAGTGGGGCGGTCATTGGCAGGAGGCT
CACTCGACCGTTATCACGTGTGTCCCGGCGGCAGGACCCACGGTAACAGC
CGCGGTAGCCGCCGATCGAGCAGCTCAACGGTTACAAAGCTCAGACACGC
TGACATCGCTGGGCGCAGGGAAAGAACAACAACAAGATGGTGGCCATCCA
GCCCACCTTTGCCTCTTGAAGCTCGACACGGGTCGAAATCACCAGCTCCG
AATGCAACTTGCGGCGATGGGCGCTGGCATTGTGGGCGATACGCAGTACC
GGGGGATTGTGGGCAGATTACATCGCGGTGTGCCAGAGGATGACAGGACA
GACATTTTTGGGCAAGAGCCGGCGACCATCGCATTGACGGCCGCGCGATT
AGAGTTTGAATGGAATTCGGAGCGTGTAGTGTACACCGTCAAGCCGCCTA
CATGGGCGATTTTGGAGAAGCCGTCGGCCGAGGAGTCGACGGGCGGGAGT
CTCGTTGACGTTGAGGGTGAAGATAATGTAGAGGCCGTAGGAACAGCCGT
TGACGCGGTGAGGTGA
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