mRNA_H-paniculata_contig22995.6159.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22995.6159.1
Unique NamemRNA_H-paniculata_contig22995.6159.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22995.6159.1 vs. uniprot
Match: D7G1V7_ECTSI (Myb-like DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V7_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 9.260e-21
Identity = 38/56 (67.86%), Postives = 50/56 (89.29%), Query Frame = 1
Query:    7 NDSRRVWLKEEDEAIRTLVGRLGTRSWSAIEENMISEYAIMGRSGKQCRERWHNHL 174
            +++RRVW +EED+AIR LV R GTRSW+ IEE++ ++Y+I+GRSGKQCRERWHNHL
Sbjct:   14 SENRRVWSREEDDAIRVLVKRHGTRSWATIEEHLAADYSIVGRSGKQCRERWHNHL 69          
BLAST of mRNA_H-paniculata_contig22995.6159.1 vs. uniprot
Match: F0YL55_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL55_AURAN)

HSP 1 Score: 85.5 bits (210), Expect = 5.550e-20
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 1
Query:   16 RRVWLKEEDEAIRTLVGRLGTRSWSAIEENMISEYAIMGRSGKQCRERWHNHL 174
            RRVW ++ED AI+ LV R GTRSWS I E+++S+Y I GR+GKQCRERWHNHL
Sbjct:    6 RRVWSQQEDSAIKDLVMRYGTRSWSVIAEHIVSDYNIEGRTGKQCRERWHNHL 58          
BLAST of mRNA_H-paniculata_contig22995.6159.1 vs. uniprot
Match: A0A835ZB36_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB36_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.200e-19
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 1
Query:   16 RRVWLKEEDEAIRTLVGRLGTRSWSAIEENMISEYAIMGRSGKQCRERWHNHL 174
            RRVW KEEDEAIR LV + GTRSWS I +++  +++I GRSGKQCRERWHNHL
Sbjct:    1 RRVWTKEEDEAIRGLVLQYGTRSWSVIADHIAKDFSIQGRSGKQCRERWHNHL 53          
BLAST of mRNA_H-paniculata_contig22995.6159.1 vs. uniprot
Match: A0A7S1XJ32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJ32_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.270e-19
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 1
Query:   10 DSRRVWLKEEDEAIRTLVGRLGTRSWSAIEENMISEYAIMGRSGKQCRERWHNHL 174
            + RRVW KEED AIR LV + GTRSWS I E +++++ I GR+GKQCRERWHNHL
Sbjct:   51 NDRRVWTKEEDHAIRELVAKHGTRSWSVIAERIVTDFNITGRTGKQCRERWHNHL 105          
BLAST of mRNA_H-paniculata_contig22995.6159.1 vs. uniprot
Match: F0YL28_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL28_AURAN)

HSP 1 Score: 81.3 bits (199), Expect = 1.270e-17
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   16 RRVWLKEEDEAIRTLVGRLGTRSWSAIEENMISEYAIMGRSGKQCRERWHNHL 174
            RRVW  +ED AIR LV + GTRSWS I E+++ ++ I GR+GKQCRERWHNHL
Sbjct:    7 RRVWTVQEDNAIRQLVMKYGTRSWSVIAEHIVQDFNIDGRTGKQCRERWHNHL 59          
BLAST of mRNA_H-paniculata_contig22995.6159.1 vs. uniprot
Match: D7FMG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG3_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.670e-17
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   10 DSRRVWLKEEDEAIRTLVGRLGTRSWSAIEENMISEYAIMGRSGKQCRERWHNHL 174
            DSRR W K +D A+R LV   GT++W+ +E+NMIS Y I GRSGKQ RERWHNHL
Sbjct:   21 DSRRPWTKHDDNAVRELVATHGTKNWAVVEQNMISVYGIYGRSGKQSRERWHNHL 75          
BLAST of mRNA_H-paniculata_contig22995.6159.1 vs. uniprot
Match: A0A7S2SND5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SND5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.060e-16
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   16 RRVWLKEEDEAIRTLVGRLGTRSWSAIEENMISEYAIMGRSGKQCRERWHNHL 174
            RRVW  EEDEAIRTLVG  GT+ WS I   +   Y I GR+GKQCRERWHNHL
Sbjct:   43 RRVWSNEEDEAIRTLVGEQGTKKWSWIATELRQRYNIDGRTGKQCRERWHNHL 95          
BLAST of mRNA_H-paniculata_contig22995.6159.1 vs. uniprot
Match: A0A6H5L4X1_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X1_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.080e-16
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1
Query:   13 SRRVWLKEEDEAIRTLVGRLGTRSWSAIEENMISEYAIMGRSGKQCRERWHNHL 174
            SRR W K +D A+R LV   GT++W+ +E+NMIS Y I GRSGKQ RERWHNHL
Sbjct:    9 SRRPWTKHDDNAVRELVAAHGTKNWAVVEQNMISVYGIYGRSGKQSRERWHNHL 62          
BLAST of mRNA_H-paniculata_contig22995.6159.1 vs. uniprot
Match: W7T303_9STRA (Myb-like dna-binding domain containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T303_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.750e-16
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 HGNDSRRVWLKEEDEAIRTLVGRLGTRSWSAIEENMISE--YAIMGRSGKQCRERWHNHL 174
            + N  RRVW K+ED++IR LV   GTRSWS I E + S+   +I GR+GKQCRERWHNHL
Sbjct:   85 NSNSDRRVWSKDEDDSIRNLVAAHGTRSWSVIAEKIASDKTLSITGRTGKQCRERWHNHL 144          
BLAST of mRNA_H-paniculata_contig22995.6159.1 vs. uniprot
Match: A0A2R5FYY8_9STRA (Transcription factor MYB118 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYY8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.990e-16
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 HGNDSRRVWLKEEDEAIRTLVGRLGTRSWSAIEENMISEYAIMGRSGKQCRERWHNHL 174
            +G+  RR W + ED+AIRTLV   GT+ WS I   +IS+Y I  R+GKQCRERWHNHL
Sbjct:    9 NGSGDRRAWSQREDDAIRTLVKEHGTKRWSTIATRLISDYRIDCRTGKQCRERWHNHL 66          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22995.6159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1V7_ECTSI9.260e-2167.86Myb-like DNA-binding domain containing protein n=1... [more]
F0YL55_AURAN5.550e-2067.92Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A835ZB36_9STRA2.200e-1969.81Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A7S1XJ32_9STRA3.270e-1965.45Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0YL28_AURAN1.270e-1764.15Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
D7FMG3_ECTSI1.670e-1763.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2SND5_9STRA1.060e-1667.92Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A6H5L4X1_9PHAE1.080e-1662.96MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
W7T303_9STRA2.750e-1660.00Myb-like dna-binding domain containing protein n=2... [more]
A0A2R5FYY8_9STRA6.990e-1658.62Transcription factor MYB118 n=1 Tax=Hondaea fermen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22995contigH-paniculata_contig22995:3123..3296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog2880.D7G1V7
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929643.5832314-CDS-H-paniculata_contig22995:3122..32961622929643.5832314-CDS-H-paniculata_contig22995:3122..3296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22995 3123..3296 +
1691480948.4328725-CDS-H-paniculata_contig22995:3122..32961691480948.4328725-CDS-H-paniculata_contig22995:3122..3296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22995 3123..3296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22995.6159.1prot_H-paniculata_contig22995.6159.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22995 3123..3296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22995.6159.1

>prot_H-paniculata_contig22995.6159.1 ID=prot_H-paniculata_contig22995.6159.1|Name=mRNA_H-paniculata_contig22995.6159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
HGNDSRRVWLKEEDEAIRTLVGRLGTRSWSAIEENMISEYAIMGRSGKQC
RERWHNHL
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mRNA from alignment at H-paniculata_contig22995:3123..3296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22995.6159.1 ID=mRNA_H-paniculata_contig22995.6159.1|Name=mRNA_H-paniculata_contig22995.6159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig22995:3123..3296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGGTAACGACAGTCGACGTGTTTGGCTTAAGGAAGAAGACGAGGCTAT CAGGACGTTGGTCGGGAGATTGGGCACGCGAAGCTGGTCTGCCATCGAGG AAAATATGATTTCGGAATACGCAATCATGGGTCGTTCGGGCAAGCAATGT CGCGAGCGCTGGCACAACCACCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig22995:3123..3296+

>mRNA_H-paniculata_contig22995.6159.1 ID=mRNA_H-paniculata_contig22995.6159.1|Name=mRNA_H-paniculata_contig22995.6159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig22995:3123..3296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGGTAACGACAGTCGACGTGTTTGGCTTAAGGAAGAAGACGAGGCTAT
CAGGACGTTGGTCGGGAGATTGGGCACGCGAAGCTGGTCTGCCATCGAGG
AAAATATGATTTCGGAATACGCAATCATGGGTCGTTCGGGCAAGCAATGT
CGCGAGCGCTGGCACAACCACCTGCATGGTAACGACAGTCGACGTGTTTG
GCTTAAGGAAGAAGACGAGGCTATCAGGACGTTGGTCGGGAGATTGGGCA
CGCGAAGCTGGTCTGCCATCGAGGAAAATATGATTTCGGAATACGCAATC
ATGGGTCGTTCGGGCAAGCAATGTCGCGAGCGCTGGCACAACCACCTG
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