mRNA_H-paniculata_contig22955.6150.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22955.6150.1
Unique NamemRNA_H-paniculata_contig22955.6150.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22955.6150.1 vs. uniprot
Match: D8LRY2_ECTSI (ArfGAP n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY2_ECTSI)

HSP 1 Score: 311 bits (796), Expect = 1.980e-96
Identity = 200/331 (60.42%), Postives = 220/331 (66.47%), Query Frame = 1
Query:   31 QEAHSADALYCFEVISANRRSYTLQAEGPDELKSWTLAIRRSIESQVRAKHALFFRGGGGXXXXXXXXVSGNGTLDTDDFTSDEEAWPHRGANGG-----GENGGRERNPLVQEVMQANPECADCGSPNPDWVSLNLGVLMCIQCSAGIHRSLGTHVSKVRSLGLDALDETDLSVLREVGNAKSNAIWEHSLDQQGGWSKPTPHSPAEEKRRFVQAKYVWKGFVEGSSNXXXXXXXXXXXXXXSSAGDFAAANGAGFSTSXXXAVGRGSHRXXXXXXXXXXXXXXQRDSGGGGIFGSDGGSRAGAERWSLRLSECAATGDLAGAVEALAHG 1008
            +E HS+DALYCFEV SANRRSY LQAEGP+EL SW   IRR+IESQ+     L    GGG         SG GT   DD TSDE+ +    ANGG     G+ G    NPLVQEVM+ANPECADCG+PNPDWVSLNLGVL+CIQCS GIHRSLGTHVSKVRSLGLDALDE DLSVLREVGNA+SNAIWEHSL Q+ GW KPT +SP + KR ++QAKYVWKGFVEGS++                AG             XXX        X    XXXXXXXXX         F + GG   GAE WSLRLSECAA GDLAGAVEALAHG
Sbjct:  381 KEVHSSDALYCFEVFSANRRSYMLQAEGPEELTSWVTCIRRTIESQLTGSTPLPGDDGGGGTPTGRPN-SGTGTSYADD-TSDEDGYRSL-ANGGMGARGGDAGRSPNNPLVQEVMKANPECADCGAPNPDWVSLNLGVLVCIQCS-GIHRSLGTHVSKVRSLGLDALDEIDLSVLREVGNARSNAIWEHSLAQREGWEKPTANSPGDLKRSYIQAKYVWKGFVEGSTSRLV-------------AGGXXXXXXXXXXXXXXXXXXXXXXXXHSRRXXXXXXXXXXXXXXXXXXFAARGG---GAEMWSLRLSECAALGDLAGAVEALAHG 691          
BLAST of mRNA_H-paniculata_contig22955.6150.1 vs. uniprot
Match: A0A6H5L7N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7N2_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 3.770e-96
Identity = 208/342 (60.82%), Postives = 228/342 (66.67%), Query Frame = 1
Query:   31 QEAHSADALYCFEVISANRRSYTLQAEGPDELKSWTLAIRRSIESQVRAKHALFFRGGGGXXXXXXXXVSGNGTLDTDDFTSDEEAWPHRGANGGGENGGRE----RNPLVQEVMQANPECADCGSPNPDWVSLNLGVLMCIQCSAGIHRSLGTHVSKVRSLGLDALDETDLSVLREVGNAKSNAIWEHSLDQQGGWSKPTPHSPAEEKRRFVQAKYVWKGFVEGSSNXXXXXXXXXXXXXXSSAGDFAA------------ANGAGFSTSXXXAVGRGSHRXXXXXXXXXXXXXXQRDSGGGGIFGSDGGSRAGAERWSLRLSECAATGDLAGAVEALAHG 1008
            +E HS+DALYCFEV SANRRSY LQAEGPDEL SW   IRR+IESQ+     L    GGG         SG GT   DD TSDEE +      GGG  GG       NPLVQEVM+ANPECADCG+PNPDWVS+NLGVL+CIQCS GIHRSLGTHVSKVRSLGLDALDE DLSVLREVGNA+SNAIWEHSL Q+ GW KPT +SP + KR ++QAKYVWKGFVEGS++         XXXXX                    ++G G     XX        XXXXXXXXXXXXXX         F + GG   GAE WSLRLSECAA GDLAGAVEALAHG
Sbjct:  453 KEVHSSDALYCFEVFSANRRSYMLQAEGPDELTSWVTCIRRTIESQLTGSTPLPGDDGGGGTPTGRLN-SGAGTSYADD-TSDEEGYRSLANGGGGARGGDAGRPPNNPLVQEVMKANPECADCGAPNPDWVSINLGVLVCIQCS-GIHRSLGTHVSKVRSLGLDALDEIDLSVLREVGNARSNAIWEHSLAQREGWEKPTANSPGDLKRSYIQAKYVWKGFVEGSTSRLVAGGGWGXXXXXXXXXXXXXXXXXXXXXXXXXSSGDGGGVXSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAARGG---GAEMWSLRLSECAALGDLAGAVEALAHG 788          
BLAST of mRNA_H-paniculata_contig22955.6150.1 vs. uniprot
Match: K0TI75_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TI75_THAOC)

HSP 1 Score: 177 bits (450), Expect = 3.750e-46
Identity = 95/224 (42.41%), Postives = 136/224 (60.71%), Query Frame = 1
Query:   58 YCFEVISANRRSYTLQAEGPDELKSWTLAIRRSIESQVRA-----KHALFFRGGGGXXXXXXXXVSGNGT-LDTDDFTSDEEAW--PHRGANGGG-----ENGGRERNPLVQEVMQANPECADCGSPNPDWVSLNLGVLMCIQCSAGIHRSLGTHVSKVRSLGLDALDETDLSVLREVGNAKSNAIWEHSLDQQGGWSKPTPHSPAEEKRRFVQAKYVWKGFVE 690
            +CFE+IS N +SY LQA GPD+ K W   IR  IE Q+ A     ++ L     G           G     +T D++ D ++     R + GGG     +N    ++PL+ ++++AN  CADC + NPDW SLNLGVL+CI+CS G+HRSLG HVSKVRS+ LD + +++  +L E+GN  +N IWE  L  Q GW+KP   +P + K  ++++KYVWKGF+E
Sbjct:  593 FCFEIISPNSKSYLLQACGPDDYKMWVDGIRSCIEQQLIAGKLPPENMLLGNSSGKSSKAGPYRSKGKAAETETIDYSVDGDSAIAGRRSSVGGGLFSPEQNTAPGKSPLIPKILEANRVCADCSAINPDWASLNLGVLVCIECS-GVHRSLGVHVSKVRSIRLDDIRDSEYKLLMEIGNDNANTIWEAGLHHQKGWTKPQSGAPRKAKEEWIKSKYVWKGFLE 815          
BLAST of mRNA_H-paniculata_contig22955.6150.1 vs. uniprot
Match: A0A7S2LIT9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LIT9_9STRA)

HSP 1 Score: 171 bits (434), Expect = 3.250e-44
Identity = 94/218 (43.12%), Postives = 130/218 (59.63%), Query Frame = 1
Query:   58 YCFEVISANRRSYTLQAEGPDELKSWTLAIRRSIESQ-----VRAKHALFFRGGG--GXXXXXXXXVSGNGTLDTDDFTSDEEAWPHRGANGGGENGGRERNPLVQEVMQANPECADCGSPNPDWVSLNLGVLMCIQCSAGIHRSLGTHVSKVRSLGLDALDETDLSVLREVGNAKSNAIWEHSLDQQGGWSKPTPHSPAEEKRRFVQAKYVWKGFVE 690
            +CFE+IS N + Y LQA GP++ K W   IR  IE Q     +   + L        G         S +   +T+    +E    ++G     + GG+ RNPLV +V++ANP CADCG+ NPDW SLNLGV++CI+CS G+HRSLG HVSKVRSL +D + +   +VL  +GN   N IWE  L  Q GW+KP   +P + K  ++++KYVWKGF+E
Sbjct:  458 FCFEIISPNSKPYLLQACGPNDYKMWVGGIRACIEQQFTHGSLPPDNMLMTSKSTSPGKRMLGRNPSSMSSGPETESIFFEEGKDNNKGLFEE-DAGGKVRNPLVPKVLEANPVCADCGNANPDWASLNLGVIVCIECS-GVHRSLGVHVSKVRSLRMDTISDAATNVLLGLGNENVNRIWEAGLHHQKGWTKPKGGAPRKAKEEWIKSKYVWKGFLE 673          
BLAST of mRNA_H-paniculata_contig22955.6150.1 vs. uniprot
Match: B8BVF6_THAPS (ArfGAP (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVF6_THAPS)

HSP 1 Score: 155 bits (391), Expect = 1.050e-41
Identity = 90/216 (41.67%), Postives = 120/216 (55.56%), Query Frame = 1
Query:   43 SADALYCFEVISANRRSYTLQAEGPDELKSWTLAIRRSIESQVRAKHALFFRGGGGXXXXXXXXVSGNGTLDTDDFTSDEEAWPHRGANGGGENGGRERNPLVQEVMQANPECADCGSPNPDWVSLNLGVLMCIQCSAGIHRSLGTHVSKVRSLGLDALDETDLSVLREVGNAKSNAIWEHSLDQQGGWSKPTPHSPAEEKRRFVQAKYVWKGFVE 690
            +++  +CFE+IS N +SY LQA GP++ K W   IR  I      K   F R G              G   T+  + DE       A+G G  G R        +   +  CADCG+ +PDW SLNLGV++CI+CS G+HRSLG HVSKVRSL LD + E +  +L E+GN K N IWE  L  Q GW+KP   +    K  ++++KY+WKGFVE
Sbjct:   64 NSNLRWCFEIISPNSKSYMLQACGPNDFKMWVGGIRSCIGKITPRK---FGRNGA------------RGGTQTESISFDEGGDAEGNASGHG--GAR------LALFDNDFVCADCGNVDPDWASLNLGVVLCIECS-GVHRSLGVHVSKVRSLRLDTISEFEYKLLLELGNDKVNQIWEAGLHHQKGWTKPKGGATRRVKEEWIKSKYLWKGFVE 255          
BLAST of mRNA_H-paniculata_contig22955.6150.1 vs. uniprot
Match: A0A448Z6Q3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6Q3_9STRA)

HSP 1 Score: 163 bits (413), Expect = 4.190e-41
Identity = 91/228 (39.91%), Postives = 124/228 (54.39%), Query Frame = 1
Query:   31 QEAHSADALYCFEVISA-NRRSYTLQAEGPDELKSWTLAIRRSIESQVRA---KHALFFRGGGGXXXXXXXXVSGNGTLDTDDFTSDEEAWPHRGANGGGENGGRERNPLVQEVMQANPECADCGSPNPDWVSLNLGVLMCIQCSAGIHRSLGTHVSKVRSLGLDALDETDLSVLREVGNAKSNAIWEHSLDQQGGWSKPTPHSPAEEKRRFVQAKYVWKGFVEGSSN 702
            +E       +CFEV S  +++   LQA GPDE K W   IR+ IE Q+ +    H    RG                 +D  +    +    H   +        +   L  ++M+ANP CADCG+ NPDWVSLNLGVL+CI CS G+HRSLG HVSKVRSL LDAL E + +V+  +GN  +N IWE  +  Q GW KP   S  + K  ++++KY+WKGF+  S +
Sbjct: 1204 KEGTKGGPRFCFEVHSPMSQKPLVLQARGPDEFKKWVDIIRKGIEHQLASGNTTHITPKRGMPARSDSNESFQDETENVDMPELHDIDNQLCHEELDA-------KNTSLTPKLMKANPTCADCGAENPDWVSLNLGVLICIDCS-GVHRSLGVHVSKVRSLKLDALTEFEANVILAIGNENANGIWEEGVLMQKGWKKPIASSNRKTKEEWIKSKYLWKGFLNVSDD 1423          
BLAST of mRNA_H-paniculata_contig22955.6150.1 vs. uniprot
Match: A0A2R5GGS8_9STRA (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGS8_9STRA)

HSP 1 Score: 163 bits (412), Expect = 5.870e-41
Identity = 94/217 (43.32%), Postives = 124/217 (57.14%), Query Frame = 1
Query:   49 DALYCFEVISANRRSYTLQAEGPDELKSWTLAIRRSIESQVRAKHALFFRGGGGXXXXXXXXVSGNGTLDTDDFTSDEEAWPHRGANGGGENGGRERNPLVQEVMQANPECADCGSPNPDWVSLNLGVLMCIQCSAGIHRSLGTHVSKVRSLGLDALDETDLSVLREVGNAKSNAIWEHSLDQQGGWSKPTPHSPAEEKRRFVQAKYVWKGFVEGSS 699
            D  +CFE++S NRR+Y +QAE    ++ W   IR S E  +       F G           VS    + TD  T  EEA   + A G         +P +  V +AN  CADCG+  PDW S+NLGVL+CI+CS GIHRSLG HVSKVRS+ LD+  +   +VL  +GN   NAI+E  L +Q  W+KP P +P   K RF+QAKYVWK F+E ++
Sbjct: 1125 DMSFCFEILSPNRRTYVMQAENEISMREWIDTIRTSTERLITD-----FGG--------QSQVSRTSEVSTDPGT--EEATKTKFAAGQ-----LCSDPQLLAVQEANTTCADCGAAQPDWASINLGVLVCIECS-GIHRSLGVHVSKVRSMTLDSWTDASKAVLEALGNEAVNAIFEAHLSEQEEWAKPEPDAPRRVKERFIQAKYVWKAFLEDAA 1320          
BLAST of mRNA_H-paniculata_contig22955.6150.1 vs. uniprot
Match: A0A7S1ZFW7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZFW7_9STRA)

HSP 1 Score: 161 bits (408), Expect = 1.520e-40
Identity = 98/270 (36.30%), Postives = 136/270 (50.37%), Query Frame = 1
Query:   40 HSADALYCFEVISANRRSYTLQAEGPDELKSWTLAIRRSIESQV-----------------RAKHALF------------------FRG-------------GGGXXXXXXXXVSGNGTL--DTDDFTSDEEAWPHRGANGGGENGGRERNPLVQEVMQANPECADCGSPNPDWVSLNLGVLMCIQCSAGIHRSLGTHVSKVRSLGLDALDETDLSVLREVGNAKSNAIWEHSLDQQGGWSKPTPHSPAEEKRRFVQAKYVWKGFVEGSS 699
            +S    +CFE+IS N R Y LQA GP E + W  +IR +IE Q+                   + A F                  F G              G          SG+     D DDF+        +  N         RNPLV++++ ANP CADCG+P+PDW S+NLGVL+CI+CS G+HRSLG HVSKVRS+ LD L E +  +L  +GN K+N IWE +   Q GW KP  +   + K+ ++++K++WKGF+E S+
Sbjct:  556 NSGGLRFCFEIISPNSRPYMLQACGPQEFRIWVDSIRSAIEKQLVQGGVPPDSMLLGAGKPTRRRASFSNPFSDIGNSSMGSTDDEFSGEDDNLGSLYRKSIDGSEAAISSMMQSGSAPFMRDDDDFSVMTSTTSIQPCN---------RNPLVKKILDANPICADCGAPSPDWASINLGVLLCIECS-GVHRSLGVHVSKVRSVRLDELSEPEARLLLALGNEKANRIWEAATGIQAGWKKPNANDSQKLKQDWIKSKFLWKGFLEYSA 815          
BLAST of mRNA_H-paniculata_contig22955.6150.1 vs. uniprot
Match: A0A7R9UG56_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG56_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.010e-39
Identity = 88/222 (39.64%), Postives = 121/222 (54.50%), Query Frame = 1
Query:   31 QEAHSADAL-YCFEVISANRRSYTLQAEGPDELKSWTLAIRRSIESQVRAKHALFFRGGGGXXXXXXXXVSGNGTLDTDDFTSDEEAWPHRGANGGGENGGRERNPLVQEVMQANPECADCGSPNPDWVSLNLGVLMCIQCSAGIHRSLGTHVSKVRSLGLDALDETDLSVLREVGNAKSNAIWEHSLDQQGGWSKPTPHSPAEEKRRFVQAKYVWKGFVEG 693
            +E H    L +CFE++SANRRSY LQAEGPDEL +W  AIR  I  Q+    +                     T  ++D  ++     +R A              V E+ + +  CADC + +PDWV +N+G L+CI+CS GIHRSLG HVSKVRS+ LD LD  D+ VLR +GN   N + E  L  Q GW +P       +K +F+++KYV++GF  G
Sbjct:  541 REVHQNPELRFCFEILSANRRSYMLQAEGPDELAAWVEAIRSCIARQLATGESE--------------------TRGSEDGDAEGPGCGYREA--------------VNELCRRSSRCADCDAADPDWVIINIGCLVCIECS-GIHRSLGVHVSKVRSVVLDRLDAVDMRVLRRLGNYAVNRLMEAGLPSQTGWKRPVVGDSRADKEKFIRSKYVYRGFTSG 727          
BLAST of mRNA_H-paniculata_contig22955.6150.1 vs. uniprot
Match: A0A7S1BVQ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BVQ1_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.030e-39
Identity = 94/238 (39.50%), Postives = 129/238 (54.20%), Query Frame = 1
Query:   58 YCFEVISANRRSYTLQAEGPDELKSWTLAIRRSIESQVR---------------AKHALFFRGG------GGXXXXXXXXVSGNGTLDTDDFTSDEEA---WPHRGANGGGENG----GRERNPLVQEVMQANPECADCGSPNPDWVSLNLGVLMCIQCSAGIHRSLGTHVSKVRSLGLDALDETDLSVLREVGNAKSNAIWEHSLDQQGGWSKPTPHSPAEEKRRFVQAKYVWKGFV 687
            +CFE+I+ N R Y LQA GP + K W  +IR +I +++                  +     GG      GG         S +  +     T++  A    PH    G G N     GR+ +  +++++ AN  CADCG+ +PDW SLN+GV++CI+CS G+HRSLG HVSKVRSL LD +   +  VL+E+GN K N I E SLD   GW+KPTP      K  F++AKY WKGFV
Sbjct:  375 FCFEIITPNNRPYMLQARGPRDFKMWVESIRNAIGNELAHGPMSLPNQGDATEDGVNGWVLEGGSGDEATGGSSKLIMNAPSYDSDMPLSPTTTEGSADVPSPH----GTGRNSMAPVGRDSS-SIRDLLSANLTCADCGAKDPDWASLNMGVIVCIECS-GVHRSLGVHVSKVRSLTLDKISVLECRVLKELGNEKINTIMEASLDTAEGWTKPTPEVSRVRKEAFIKAKYQWKGFV 606          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22955.6150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRY2_ECTSI1.980e-9660.42ArfGAP n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A6H5L7N2_9PHAE3.770e-9660.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K0TI75_THAOC3.750e-4642.41Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S2LIT9_9STRA3.250e-4443.12Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8BVF6_THAPS1.050e-4141.67ArfGAP (Fragment) n=1 Tax=Thalassiosira pseudonana... [more]
A0A448Z6Q3_9STRA4.190e-4139.91Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A2R5GGS8_9STRA5.870e-4143.32Arf-GAP with GTPase, ANK repeat and PH domain-cont... [more]
A0A7S1ZFW7_9STRA1.520e-4036.30Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7R9UG56_9STRA1.010e-3939.64Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1BVQ1_9STRA1.030e-3939.50Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22955contigH-paniculata_contig22955:305..3951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.8
Seed ortholog evalue2e-82
Seed eggNOG ortholog2880.D8LRY2
KEGG koko:K12488,ko:K12489,ko:K14820
KEGG Pathwayko04144,ko04666,map04144,map04666
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0521@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko04131,ko04147
Exons4
Model size1008
Cds size1008
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22955.6150.1prot_H-paniculata_contig22955.6150.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22955 305..3951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929642.5503676-CDS-H-paniculata_contig22955:304..5011622929642.5503676-CDS-H-paniculata_contig22955:304..501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22955 305..501 +
1691480947.9995193-CDS-H-paniculata_contig22955:304..5011691480947.9995193-CDS-H-paniculata_contig22955:304..501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22955 305..501 +
1622929642.5655758-CDS-H-paniculata_contig22955:1344..15131622929642.5655758-CDS-H-paniculata_contig22955:1344..1513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22955 1345..1513 +
1691480948.0116773-CDS-H-paniculata_contig22955:1344..15131691480948.0116773-CDS-H-paniculata_contig22955:1344..1513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22955 1345..1513 +
1622929642.5788157-CDS-H-paniculata_contig22955:2098..21861622929642.5788157-CDS-H-paniculata_contig22955:2098..2186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22955 2099..2186 +
1691480948.0206852-CDS-H-paniculata_contig22955:2098..21861691480948.0206852-CDS-H-paniculata_contig22955:2098..2186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22955 2099..2186 +
1622929642.593066-CDS-H-paniculata_contig22955:3397..39511622929642.593066-CDS-H-paniculata_contig22955:3397..3951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22955 3398..3951 +
1691480948.0304658-CDS-H-paniculata_contig22955:3397..39511691480948.0304658-CDS-H-paniculata_contig22955:3397..3951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22955 3398..3951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22955.6150.1

>prot_H-paniculata_contig22955.6150.1 ID=prot_H-paniculata_contig22955.6150.1|Name=mRNA_H-paniculata_contig22955.6150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=336bp
LFIYFLVLLKQEAHSADALYCFEVISANRRSYTLQAEGPDELKSWTLAIR
RSIESQVRAKHALFFRGGGGGGGHGGGGVSGNGTLDTDDFTSDEEAWPHR
GANGGGENGGRERNPLVQEVMQANPECADCGSPNPDWVSLNLGVLMCIQC
SAGIHRSLGTHVSKVRSLGLDALDETDLSVLREVGNAKSNAIWEHSLDQQ
GGWSKPTPHSPAEEKRRFVQAKYVWKGFVEGSSNNRESGGGGGGSGSTSS
AGDFAAANGAGFSTSSGGAVGRGSHRRGSGGSVSSGGGLGQRDSGGGGIF
GSDGGSRAGAERWSLRLSECAATGDLAGAVEALAHG
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mRNA from alignment at H-paniculata_contig22955:305..3951+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22955.6150.1 ID=mRNA_H-paniculata_contig22955.6150.1|Name=mRNA_H-paniculata_contig22955.6150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3647bp|location=Sequence derived from alignment at H-paniculata_contig22955:305..3951+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTTTATTTATTTTCTGGTACTTTTGAAGCAGGAAGCACATTCAGCAGA CGCGTTGTACTGCTTCGAGGTGATCTCGGCGAACCGAAGGAGCTACACAC TTCAGGCGGAGGGGCCGGATGAGCTCAAGTCTTGGACGTTGGCGATCCGA CGAAGCATCGAATCGCAGGTACGGGCAAAACATGCTCTTTTTTTTCGGTT TTAGATCAGATATGTTACTGATGTCCATGTTTGTTACGCACTGTTTTGGT TCGGGCTTTGTCTCAAAAAGAATCCTTTTTTTAACCTCCGGAAGGCTAAG GCAAAAACCTCTATCCGATGCTTCCATACCGAAGTACGTCTACATTTCCT TTTACAGAACAGAGTTATTTGTTCCTCTGCGGGGTTGGCGCCACCCCGGA GCTCGTCTAGGTATATATAGCAGTGACGATCCTCTGCCGCCCTCCATTTC CCCGCAGAAACGCTTCGTAAAGTTTTGGAAGGCGCATGGCACAACATTGA GTGGTTTGTAAGAGCGGGGTGGTCATTGTGCTGACGCTCTGTATAAAATG GAAAGTGACCAATCGGTAGTTTCGATAATATGACTCCGATAAAAATCTTT TTACTTGAGCTATTTTGTTTTTTTTATCTTCGGAAAACCCGGCCCACCCG TACTTACTATCATCCTTGTGAATTCCGTGTACCCACAAAAAAACGTTTTA GTTTTTGTGGAATCCCCTCCCTCCCCATAATCAATTAATTTTGCTGATCG ATGTATACATGTACAACGACAGATTAAAGTGAGCTAAATAACCCCAACAT GAGATGACGTACAAGGAAGTTACTATCTGAGGGTTATATTTATAGTTGAA CTGACTGTACGAATACGACGAAAAGAAACTATCTTTGATGTTTACTGGGC TGTATATGTACTGACCGCCCTACGCACGTGCCACGCCGTACACACGAGCA GCTGACAGGAGGGGGTAGTCTGGGTGACACCGATCATGGCGGGGGAGGCG TTGGGGGCGGTGGTGGTGGTGGCGGCGGCAGCGGTGGCAGCGGCGGCGGC GGCGGCGGTGGCCACGGCGGCGGTGGGGTTAGCGGTAACGGCACGTTGGA TACGGATGATTTCACTTCAGATGAAGAGGCGTGGCCGCACAGGGGGGCGA ATGGAGGGGGCGAAAACGGGGGTCGGGAGCGTAACCCTCTGGTACAGGAG GTCATGCAGGTGGGGGTTGTGTTCGTTTTTGTGTGGCGATTTTGAAAATG TTGCTGTGTGTTTTTGTTGTTGCTGATGCTGTTGCTGTTGTCGTTATTTT TTGGTCTGAAAAGGCTTCCGGCCGGTATCCCGAAGTGTTGAGGCTTGGGT CACTGGTTGGTTCACTCTCGGTAATGGGGTTTCGTCCAGCTAAACTAGCC AATGGATCAAGAATTCAATTTTTCACGTTTGAAAATGATGAATTTTGACG TTTTATGTTGTGCTCTGTCGAACCCCCCCCCCCCCGAGAACCAGAGCCAC AAATAGGAACAAATAACTTTGTTCTGTAAAAGGAAATGTAGACGTACTTC GGTATGGAAGCATCGGATAGAGGTTTTTGCCTTAGCCTTCCGGGAGTTAA GAAAAACAAAAAAAAACAGAGCCATAATCGAACATACCATTAGTTTAACA CCAACCATCTGTTTTTTCTCCATGTGTTGACGAAGGCACGGACCGCCCCC TGTAGATAACAGGGTTTTCTTGTTAACCCTCGTTCTTTATGTCATGTTCG TTTGCGAACGTTTCAAATCCACTTTTTGTTGGAATTTTTTGCAGGCTAAC CCCGAGTGCGCAGATTGTGGGTCTCCGAACCCGGATTGGGTTTCTCTCAA CCTTGGTGTGCTCATGTGCATCCAGTGCAGCGGTGAGTTCATAAGCTTGC GTTTTGTTGTCTTGTAGTCATTCTGTCTTGGAGGTAAGTTGGTTGAGCAG TAAATATACAGCGTCTATCTTGTTGCACAAGTTGTTTTCGTGCTTCGTGG TACATGCACATTTGGTGAACGACACTTTCTATCCCCCCCCCCCCCATCGA TATTTGATTTACTTTGGCAGGTGGGTTGACTTGTATAAACGAGGCTTCCG GTGTGTCAGTGGCGTATTATAATACTGCTATGCGTTCACGCGAATGATAC AGTGATACTCCATTGTCAAACCTCTCCCCTTTCTCTTTTCCCTTTTCCCC TTTTCCCCTTCGCATTTTTCAACTTTTTTTTTTTTCAGAACATCCTATGT CCCCCCCCTTTTTTTCTAAACATGGTGTACCCCCTCTTTTTTTTTTTTCT AAACATGGTGTGCCTCCCATTTTTTTTTTCAAAACATGGTGTGCCCCCCT CATTTTTTTTTTTCTTAACATCGTGCGTCCCCCCTTTTTTTTCTTAACAT GGTGTGCCTCCCATTTTTTTTTTTTTTCAAAACATGGTGTGCCTCCCATT TTTTTTTTCAGAACATTGCATGCCCCCATTTTTTTTTTTGGCAGGCCATT TCTTTTGGGCGTATGTAGTAGGGGTTATTTGGTGGCTTCTCCATGAATAA AAATGTGCGCATCCACCAAATATGTGAAAAAGGATCCATAATTCGATTGC TTTAGAGAGCGACTTGTCCAAGCTCGGCAAAAAATGTTTAGATACTTCCA TTTGACCTCACGTGTTATTCCTGCCCCCCCACCCACCCACCCACCTGGTT CACATGCATGTTAGATGTCTATAGTAGCTTCTTTCTTGGGTCTGAACTGG CTCTTCTGTATGATGTGACCGTCGGTAATTTCTGTATCTCGTCTGTACCC AAAATGTAACTTGGGTGTGGATACACGAAAGTTACTGTATCTTACTATAT ACTAGGGGCAAGTATAGAAGCGAGTTGACCTATGATGGAAGGTTCGTCAT AAAATATGTTTCCCTCTTGTTGATAGATTAATAGTTTTGGTGATAACTTT ATGTGATACATGTACAAATGCAGATTATTAAATCAGCTGGATAACCTCTA AAATGGACACAATGGAGTATTATTATATGATGTTCAGACTTACAGTTGAT TTGACTGATGGGGTTTATTTTTCGCCCTCCTACACCCGAAAAGCAGGCAT CCACCGATCACTGGGAACCCACGTCTCCAAGGTCCGATCTCTCGGGCTCG ACGCCCTGGACGAGACAGACCTCAGCGTGCTCCGCGAGGTAGGCAACGCG AAGTCCAATGCCATCTGGGAGCATTCCCTGGATCAGCAGGGTGGTTGGAG CAAGCCCACCCCCCACTCCCCCGCCGAGGAAAAGCGGAGGTTTGTCCAGG CCAAGTACGTCTGGAAGGGCTTTGTGGAAGGGTCGTCGAACAATCGGGAG AGCGGCGGCGGCGGCGGCGGCAGTGGCTCGACGTCGTCGGCTGGAGACTT TGCTGCGGCAAACGGTGCTGGGTTCTCGACTAGTTCAGGCGGTGCCGTTG GACGAGGCTCGCATAGGCGGGGAAGCGGTGGTAGCGTCAGCAGCGGGGGG GGGTTGGGGCAAAGAGATAGCGGTGGCGGGGGGATTTTCGGGAGTGACGG GGGAAGCAGGGCGGGCGCGGAGAGGTGGTCGCTCAGATTATCGGAGTGTG CGGCTACGGGGGATCTGGCTGGGGCTGTTGAGGCGTTGGCCCACGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig22955:305..3951+

>mRNA_H-paniculata_contig22955.6150.1 ID=mRNA_H-paniculata_contig22955.6150.1|Name=mRNA_H-paniculata_contig22955.6150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2016bp|location=Sequence derived from alignment at H-paniculata_contig22955:305..3951+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTTTATTTATTTTCTGGTACTTTTGAAGCAGGAAGCACATTCAGCAGA
CGCGTTGTACTGCTTCGAGGTGATCTCGGCGAACCGAAGGAGCTACACAC
TTCAGGCGGAGGGGCCGGATGAGCTCAAGTCTTGGACGTTGGCGATCCGA
CGAAGCATCGAATCGCAGGTACGGGCAAAACATGCTCTTTTTTTTCGCTT
TTTATTTATTTTCTGGTACTTTTGAAGCAGGAAGCACATTCAGCAGACGC
GTTGTACTGCTTCGAGGTGATCTCGGCGAACCGAAGGAGCTACACACTTC
AGGCGGAGGGGCCGGATGAGCTCAAGTCTTGGACGTTGGCGATCCGACGA
AGCATCGAATCGCAGGTACGGGCAAAACATGCTCTTTTTTTTCGCGGCGG
CGGCGGCGGCGGTGGCCACGGCGGCGGTGGGGTTAGCGGTAACGGCACGT
TGGATACGGATGATTTCACTTCAGATGAAGAGGCGTGGCCGCACAGGGGG
GCGAATGGAGGGGGCGAAAACGGGGGTCGGGAGCGTAACCCTCTGGTACA
GGAGGTCATGCAGCGGCGGCGGCGGCGGCGGTGGCCACGGCGGCGGTGGG
GTTAGCGGTAACGGCACGTTGGATACGGATGATTTCACTTCAGATGAAGA
GGCGTGGCCGCACAGGGGGGCGAATGGAGGGGGCGAAAACGGGGGTCGGG
AGCGTAACCCTCTGGTACAGGAGGTCATGCAGGCTAACCCCGAGTGCGCA
GATTGTGGGTCTCCGAACCCGGATTGGGTTTCTCTCAACCTTGGTGTGCT
CATGTGCATCCAGTGCAGCGGCTAACCCCGAGTGCGCAGATTGTGGGTCT
CCGAACCCGGATTGGGTTTCTCTCAACCTTGGTGTGCTCATGTGCATCCA
GTGCAGCGCAGGCATCCACCGATCACTGGGAACCCACGTCTCCAAGGTCC
GATCTCTCGGGCTCGACGCCCTGGACGAGACAGACCTCAGCGTGCTCCGC
GAGGTAGGCAACGCGAAGTCCAATGCCATCTGGGAGCATTCCCTGGATCA
GCAGGGTGGTTGGAGCAAGCCCACCCCCCACTCCCCCGCCGAGGAAAAGC
GGAGGTTTGTCCAGGCCAAGTACGTCTGGAAGGGCTTTGTGGAAGGGTCG
TCGAACAATCGGGAGAGCGGCGGCGGCGGCGGCGGCAGTGGCTCGACGTC
GTCGGCTGGAGACTTTGCTGCGGCAAACGGTGCTGGGTTCTCGACTAGTT
CAGGCGGTGCCGTTGGACGAGGCTCGCATAGGCGGGGAAGCGGTGGTAGC
GTCAGCAGCGGGGGGGGGTTGGGGCAAAGAGATAGCGGTGGCGGGGGGAT
TTTCGGGAGTGACGGGGGAAGCAGGGCGGGCGCGGAGAGGTGGTCGCTCA
GATTATCGGAGTGTGCGGCTACGGGGGATCTGGCTGGGGCTGTTGAGGCG
TTGGCCCACGGTCAGGCATCCACCGATCACTGGGAACCCACGTCTCCAAG
GTCCGATCTCTCGGGCTCGACGCCCTGGACGAGACAGACCTCAGCGTGCT
CCGCGAGGTAGGCAACGCGAAGTCCAATGCCATCTGGGAGCATTCCCTGG
ATCAGCAGGGTGGTTGGAGCAAGCCCACCCCCCACTCCCCCGCCGAGGAA
AAGCGGAGGTTTGTCCAGGCCAAGTACGTCTGGAAGGGCTTTGTGGAAGG
GTCGTCGAACAATCGGGAGAGCGGCGGCGGCGGCGGCGGCAGTGGCTCGA
CGTCGTCGGCTGGAGACTTTGCTGCGGCAAACGGTGCTGGGTTCTCGACT
AGTTCAGGCGGTGCCGTTGGACGAGGCTCGCATAGGCGGGGAAGCGGTGG
TAGCGTCAGCAGCGGGGGGGGGTTGGGGCAAAGAGATAGCGGTGGCGGGG
GGATTTTCGGGAGTGACGGGGGAAGCAGGGCGGGCGCGGAGAGGTGGTCG
CTCAGATTATCGGAGTGTGCGGCTACGGGGGATCTGGCTGGGGCTGTTGA
GGCGTTGGCCCACGGT
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