mRNA_H-paniculata_contig22863.6107.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22863.6107.1
Unique NamemRNA_H-paniculata_contig22863.6107.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22863.6107.1 vs. uniprot
Match: D7G355_ECTSI (TFIIS central domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G355_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 4.260e-9
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 QAYKAKARELSFNLRVGKNDPLRARVLSGMLAPGALV 111
            +AYKAKARE+SFNLRVGKNDPLR R+LSG L P  LV
Sbjct:  320 KAYKAKAREMSFNLRVGKNDPLRERLLSGSLLPSDLV 356
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BLAST of mRNA_H-paniculata_contig22863.6107.1 vs. uniprot
Match: A0A6H5KU52_9PHAE (TFIIS central domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU52_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.260e-9
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 QAYKAKARELSFNLRVGKNDPLRARVLSGMLAPGALV 111
            +AYKAKARE+SFNLRVGKNDPLR R+LSG L P  LV
Sbjct:  364 KAYKAKAREMSFNLRVGKNDPLRERLLSGSLLPSDLV 400
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22863.6107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G355_ECTSI4.260e-978.38TFIIS central domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KU52_9PHAE4.260e-978.38TFIIS central domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22863contigH-paniculata_contig22863:3772..3903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionTranscription elongation factor S-IIM
Ec32 orthologEc-03_004550.1
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929637.466615-CDS-H-paniculata_contig22863:3771..39031622929637.466615-CDS-H-paniculata_contig22863:3771..3903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22863 3772..3903 +
1691480946.1973202-CDS-H-paniculata_contig22863:3771..39031691480946.1973202-CDS-H-paniculata_contig22863:3771..3903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22863 3772..3903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22863.6107.1prot_H-paniculata_contig22863.6107.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22863 3772..3903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22863.6107.1

>prot_H-paniculata_contig22863.6107.1 ID=prot_H-paniculata_contig22863.6107.1|Name=mRNA_H-paniculata_contig22863.6107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
QAYKAKARELSFNLRVGKNDPLRARVLSGMLAPGALVSSRLLAM
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mRNA from alignment at H-paniculata_contig22863:3772..3903+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22863.6107.1 ID=mRNA_H-paniculata_contig22863.6107.1|Name=mRNA_H-paniculata_contig22863.6107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig22863:3772..3903+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCCTACAAGGCGAAGGCACGGGAGCTGTCCTTCAATCTTCGCGTAGG
CAAGAATGACCCCCTGAGAGCGCGCGTACTGTCTGGCATGCTCGCACCGG
GCGCCTTGGTGAGTTCCCGTCTTTTAGCCATG
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Coding sequence (CDS) from alignment at H-paniculata_contig22863:3772..3903+

>mRNA_H-paniculata_contig22863.6107.1 ID=mRNA_H-paniculata_contig22863.6107.1|Name=mRNA_H-paniculata_contig22863.6107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig22863:3772..3903+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCCTACAAGGCGAAGGCACGGGAGCTGTCCTTCAATCTTCGCGTAGG
CAAGAATGACCCCCTGAGAGCGCGCGTACTGTCTGGCATGCTCGCACCGG
GCGCCTTGGTGAGTTCCCGTCTTTTAGCCATGCAGGCCTACAAGGCGAAG
GCACGGGAGCTGTCCTTCAATCTTCGCGTAGGCAAGAATGACCCCCTGAG
AGCGCGCGTACTGTCTGGCATGCTCGCACCGGGCGCCTTGGTGAGTTCCC
GTCTTTTAGCCATG
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