prot_H-paniculata_contig22863.6107.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig22863.6107.1
Unique Nameprot_H-paniculata_contig22863.6107.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length44
Homology
[Close]
BLAST of mRNA_H-paniculata_contig22863.6107.1 vs. uniprot
Match: D7G355_ECTSI (TFIIS central domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G355_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 4.260e-9
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0 
Query:    1 QAYKAKARELSFNLRVGKNDPLRARVLSGMLAPGALV 37
            +AYKAKARE+SFNLRVGKNDPLR R+LSG L P  LV
Sbjct:  320 KAYKAKAREMSFNLRVGKNDPLRERLLSGSLLPSDLV 356
[Close]
BLAST of mRNA_H-paniculata_contig22863.6107.1 vs. uniprot
Match: A0A6H5KU52_9PHAE (TFIIS central domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU52_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.260e-9
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0 
Query:    1 QAYKAKARELSFNLRVGKNDPLRARVLSGMLAPGALV 37
            +AYKAKARE+SFNLRVGKNDPLR R+LSG L P  LV
Sbjct:  364 KAYKAKAREMSFNLRVGKNDPLRERLLSGSLLPSDLV 400
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22863.6107.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G355_ECTSI4.260e-978.38TFIIS central domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KU52_9PHAE4.260e-978.38TFIIS central domain-containing protein n=1 Tax=Ec... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036575Transcription elongation factor S-II, central domain superfamilyGENE3D1.10.472.30coord: 1..41
e-value: 1.4E-8
score: 36.9
IPR036575Transcription elongation factor S-II, central domain superfamilySUPERFAMILY46942Elongation factor TFIIS domain 2coord: 2..38
IPR003618Transcription elongation factor S-II, central domainPFAMPF07500TFIIS_Mcoord: 2..38
e-value: 1.9E-7
score: 31.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22863contigH-paniculata_contig22863:3772..3903 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22863.6107.1mRNA_H-paniculata_contig22863.6107.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig22863 3772..3903 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig22863.6107.1 ID=prot_H-paniculata_contig22863.6107.1|Name=mRNA_H-paniculata_contig22863.6107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
QAYKAKARELSFNLRVGKNDPLRARVLSGMLAPGALVSSRLLAM
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036575TFIIS_cen_dom_sf
IPR003618TFIIS_cen_dom