mRNA_H-paniculata_contig22809.6088.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig22809.6088.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE) HSP 1 Score: 184 bits (467), Expect = 4.880e-49 Identity = 119/303 (39.27%), Postives = 169/303 (55.78%), Query Frame = 1
Query: 1 VAYYGLLQLFLTRRAVYLLVWDESKEGN-----SETAAGGSTGELETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSSGGRAVSVEKVASLTSCARGGWWRHVVSSLFWGLAGIVGFKQGWPCDWRTGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDPSGGERHTVPLTLAEDQVP----S*QTSSAEVPVKAR---EDLLSEWRRVI---KDKALTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 864
VAY GLLQ+FLT RAV +LV + K G S G +LE L + WLR+ S R+P+ D+ILV KCDL +A + +R+E AC WL+ + +G + V +E SLTSC G H SS G K GW CDWR AD + PSL++R++ K G +R +MVLP+SW AL+ L G R V + L + P + +T+ E + EDL +W+ + + +TV N ++ALEGAL IRE++G+++ ++FLDV WLAK+L+P+LNHK
Sbjct: 253 VAYTGLLQMFLTPRAVCVLVCNAGKFGQQTRSESNDQVGEDCRKLEELRVCDWLRSISRRVPNNDVILVATKCDLAG---GNAGKIGARMEHACRRWLSSWVRNGLQPVRLEPCVSLTSCFETGVGEHGESS-----TGSHELKGGWACDWRD-MADGNPSPSLLHRLVNKPDGRGLRGTQMVLPRSWDIALTVLEALEHG-RDPVEVVLRKSPDPDRGDATETARGETAMYQGITVEDLSIKWQETVDGLERSGVTVTNAKNALEGALLIREFDGSLIRYEKFIFLDVVWLAKILKPLLNHK 545
BLAST of mRNA_H-paniculata_contig22809.6088.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE) HSP 1 Score: 170 bits (431), Expect = 1.740e-44 Identity = 112/302 (37.09%), Postives = 166/302 (54.97%), Query Frame = 1
Query: 1 VAYYGLLQLFLTRRAVYLLVWDESK-----EGNSETAAGGSTGELETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSSGGRAVSVEKVASLTSCARGGWWRHVVSSLFWGLAGIVGFKQGWPCDWRTGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDPSGGERHTVPLTLA---EDQVPS*QTSSAEVPVKAR---EDLLSEWRRVIKD---KALTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 864
VAY GLLQ+FLT R+V +LV + + ++ +LE L + WLR+ S R+P D+ILV KCDL + + + Q R+E AC WL+ + +G +V +E+ SLTSC G H S G KQGW CDWR D P SL+ R++ K +R +MVLP+SW AL+FL G RH V + + + + +T+ V E+L + W+ + + + +TV N E+ALEGAL+IRE++G+++ +VFLDV WLA++L+P+LNHK
Sbjct: 233 VAYTGLLQMFLTPRSVCVLVCNAGEFRQQLGSDNIDQVEEDCRKLEGLRVCDWLRSISCRVPGNDVILVATKCDLVNGNVEETGQ---RIEHACRTWLSSWVRNGMDSVRLERHVSLTSCFPIGASEHGESR-----RGNHALKQGWACDWRDVEGDMSSP-SLLYRLVNKPDQGGLRGVQMVLPRSWDVALTFLDSLEYG-RHPVEMVMLKSPDSDSGATETAGGTTTVYQGITVEELSARWQGTVDELGRRGITVTNAENALEGALSIREFDGSLVCHEKFVFLDVVWLARILKPLLNHK 524
BLAST of mRNA_H-paniculata_contig22809.6088.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI) HSP 1 Score: 168 bits (425), Expect = 2.340e-43 Identity = 114/305 (37.38%), Postives = 167/305 (54.75%), Query Frame = 1
Query: 1 VAYYGLLQLFLTRRAVYLLVWDESKEGNS-ETAAGGSTGE----LETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSSGGRAVSVEKVASLTSC--ARGGWWRHVVSSLFWGLAGIVGFKQGWPCDWRTGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDPSGGERHTVPLTLAE----DQVPS*QTSSAEVPVKAR---EDLLSEWRRVIKD---KALTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 864
VAY GLLQ+FLT R+V +LV + + G E G E LE L + WLR+ S R+P D+ILV KCDL +A + RVE AC WL+ + G + V +E S TSC A GG V + G K W CDW + D+ PPSL++R++ K G +R +MVLP+SW L L G R V + L + D+ + +T+ V EDL +W++++ + + + V N ++ALEGAL+IRE++G+++ ++VFLDV WLA++L+P+LNHK
Sbjct: 203 VAYTGLLQMFLTPRSVCVLVCNAAAFGQQLERKNSGEVEEDCRKLEELRVCDWLRSISRRVPHNDVILVVTKCDLAG---GNAAEIGERVEHACRTWLSSWVRHGMQPVQLEPGVSFTSCFPAEGGQHGEVGTENH-------GSKGDWACDWHDMK-DDHPPPSLLHRLVNKPDGGGLRGAQMVLPRSWDTVLIVLDSLEQG-RDPVEVVLRKSLHPDRGDATETAGGNTVVYQGITVEDLSKKWQKIVDELERRGIIVTNAKNALEGALSIREFDGSLVRHETFVFLDVLWLARILKPLLNHK 495
BLAST of mRNA_H-paniculata_contig22809.6088.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI) HSP 1 Score: 168 bits (425), Expect = 2.440e-43 Identity = 117/308 (37.99%), Postives = 165/308 (53.57%), Query Frame = 1
Query: 1 VAYYGLLQLFLTRRAVYLLVWDESKEGNSETAAGGST------GELETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSSGGRAVSVEKVASLTSCARGGWWRHVVSSLFWGLAGIVGFKQGWPCDWRTGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDPSGGERHTVPLTL-----------AEDQVPS*QTSSAEVPVKAREDLLSEWRRVI---KDKALTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 864
VAY GLLQ+FL+ RAV LLV D G + S +L+ L + WLR+ SFR+PD D+++V KCDL + AA R+E A EWL +S +G AV VE SLTSC ++L G W CDWR G + E +P SL++R++ G+ VR +VLP+SW+ AL L D G R+ V A + VP+ + V R DL ++W V+ + ++V P+ ALEGAL IRE+EG+++ +YVFLDV WLA++L+P+LNH+
Sbjct: 343 VAYTGLLQMFLSPRAVSLLVCDLGAFGQRDGTLIHSDQLKKDLSKLQELRVCDWLRSLSFRIPDSDVVVVATKCDLAA---GMGTDAAGRIEGAIGEWLESWSGAGMNAVHVEDGVSLTSCFPPTPNEDGGAAL--GKRKSPDEDSTWACDWREGVSVESQP-SLLHRVMYNSKGN-VRGASLVLPRSWNIALEVL-DALGSGRNPVESAQQNVLASGGPKGATEVVPAVYQRNQGVGGLTRADLSTKWNEVVAALEGDGVSVVKPDHALEGALLIREHEGSLVRHETYVFLDVTWLAQILKPLLNHR 642
BLAST of mRNA_H-paniculata_contig22809.6088.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI) HSP 1 Score: 167 bits (423), Expect = 4.530e-43 Identity = 113/305 (37.05%), Postives = 169/305 (55.41%), Query Frame = 1
Query: 1 VAYYGLLQLFLTRRAVYLLVWDESKEGNSETAAGGSTGE------LETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSSGGRAVSVEKVASLTSCARGGWWRHVVSSLFWGLAGIVGFKQGWPCDWRTGRADEDRP-PSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDPSGGERHTVPLTLAEDQVPS*QTSSAEVPVKAR-------EDLLSEWRRVIKD---KALTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 864
VAY GLLQ+FLT R+V +LV + + G + E LE L + WLR+ S R+PD D+ILV KCDL +A + SR+E++C WL+ + +G + V +E LTSC H S AG +K GW CDWR ++D+P PS ++R++ K G +R +MVLP+SW AL+ L G R V + L + P + E KA E+L ++W+ + + + +TV N +ALEGAL+IRE++G+++ +VFLDV WL+++L+P+LNHK
Sbjct: 467 VAYTGLLQMFLTPRSVCVLVCNAGEFGQRRGSEDCGEVEQEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDLVG---GNAGEIGSRMENSCRTWLSGWVRNGMQPVRLEPHVCLTSCFPIRVGEHGERS-----AGNHVWKGGWACDWRN--VEDDQPSPSFLHRLVNKPDGRGLRGAQMVLPRSWDVALAVLEALEHG-RDPVEVVLRKSPEPD-RGDETETGGKADVYQGITVEELGTKWQETVDELERRGITVTNMMNALEGALSIREFDGSLVRHEKFVFLDVVWLSRILKPLLNHK 759
BLAST of mRNA_H-paniculata_contig22809.6088.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI) HSP 1 Score: 167 bits (422), Expect = 5.750e-43 Identity = 114/304 (37.50%), Postives = 162/304 (53.29%), Query Frame = 1
Query: 1 VAYYGLLQLFLTRRAVYLLVWDESKEGNSETAAGGSTGE-----LETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSSGGRAVSVEKVASLTSCARGGWWRHVVSSLFWGLAGIVGFKQGWPCDWRTGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDPSGGERHTVPLTLAEDQVPS*QTSSAEVPVKAR--------EDLLSEWRRVIKD---KALTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 864
VAY GLLQ+FLT R+V +LV + + G + E L+ L + WLR+ S R+P D+ILV KCDL S +A + R+E AC WL+ + +G V +E SLTSC G H S+ G KQGW CDWR D+ P SL+ R++ K +R +MVLP+SW AL+ L G R V + L + P + E V E+L + WR + + + + V N E+ALEGAL+IRE++G+++ +VFLDV WLA++L+P+LNHK
Sbjct: 184 VAYTGLLQMFLTPRSVCVLVCNAGEFGQQLGSDNVDQVEEDCRKLQALRVCDWLRSISRRVPGNDVILVATKCDLVS---GNAEETGRRLEHACRMWLSTWVRNGMDPVRLEPHVSLTSCFPIGDGEHGESN-----TGSDASKQGWACDWRHVEGDKSSP-SLLYRLVNKPDEGGLRGVQMVLPRSWDIALTVLEALEHG-RDPVEMVLLKS--PDSERRPTETGVGKTNVYQAIKVEELGTNWRETVDELGKRGIVVTNAENALEGALSIREFDGSLVRHEKFVFLDVVWLARILKPLLNHK 475
BLAST of mRNA_H-paniculata_contig22809.6088.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI) HSP 1 Score: 166 bits (419), Expect = 1.530e-42 Identity = 109/303 (35.97%), Postives = 160/303 (52.81%), Query Frame = 1
Query: 4 AYYGLLQLFLTRRAVYLLVWDESKEGNSETA-AGGSTGE----LETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSSGGRAVSVEKVASLTSCARGGWWRHVVSSLFWGLAGIVGF--KQGWPCDWRTGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLS------DPSGGERHTVPLTLAEDQVPS*QTSSAEVPVKAREDLLSEWRRVIKDKA---LTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 864
AY GLLQ+FLT R+V +LV + G GG E LE L + WLR+ + R+PD D ILV KCDL +A + R+E AC WLA + +G + V +E LTSC + H G G + GW CDWR G +D P L++R++ K G +R ++VLP+SW AL+ L DP H + D ++ EDL+++W + + A +TV + ++ALEGAL+IRE++G+++ ++VFLDV WLA++L+P+LNHK
Sbjct: 326 AYTGLLQMFLTPRSVCVLVCNAEAFGQQRANDTGGQIMEDCRKLEELRVCEWLRSIARRVPDNDAILVATKCDLVG---GNAAEVGRRMEQACRMWLASWVRNGMQPVRLEHGVGLTSCRPTRFGEH-------GERGTANHTVEGGWVCDWR-GHIGDDSAPGLLHRLVNKPDGGGLRGTQLVLPRSWDIALTVLEALESGRDPVEVVMHKLGNVGRGDAAEMTAANAGGYQGITVEDLIAKWLETVDELARREITVTSAKNALEGALSIREFDGSLVRHETFVFLDVVWLARILKPLLNHK 617
BLAST of mRNA_H-paniculata_contig22809.6088.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE) HSP 1 Score: 164 bits (415), Expect = 4.730e-42 Identity = 114/322 (35.40%), Postives = 169/322 (52.48%), Query Frame = 1
Query: 1 VAYYGLLQLFLTRRAVYLLVWDESKEG---NSETAAG--GSTGELETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSS-------------------GGRAVSVEKVASLTSCARGGWWRHVVSSLFWGLAGIVGFKQGWPCDWRTGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDPSGGERHTVPLTLAEDQVPS*QTSSAEVPVKAR-------EDLLSEWRRVIKD---KALTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 864
VAY GLLQ+FLT R+V +LV + + G +SE G G +LE L + WLR+ S R+PD D+ILV KCDL +A + SR+E AC WL+ + + G + V +E LTS H S AG G K GW CDWR D+ PPS ++R++ K G +R + VLP+SW AL+ L G R V L + P + ++ K E+L ++W+ + + + +TV N ++ALEGAL++RE++G+++ ++VFLDV WLA++L+P+LNHK
Sbjct: 69 VAYTGLLQMFLTPRSVCVLVCNAGEFGQRRDSEHCGGVEGDCRKLEELRVCDWLRSISRRIPDNDVILVATKCDLAG---GNAREIGSRMEKACRTWLSGWVRNAXXXXXXXXXXXXXXXXXXGMQPVRLEPHVCLTSSLPVRVDEHGDRS-----AGNHGSKGGWACDWRD-EEDDQPPPSFLHRLVNKPDGRGLRGTQTVLPRSWDIALTVLEALEHG-RDPVEAVLGKSPDPDGEDAAETAGGKTDVYQGITVEELGTKWQETVDELERRGITVTNAKNALEGALSVREFDGSLVRRENFVFLDVVWLARILKPLLNHK 380
BLAST of mRNA_H-paniculata_contig22809.6088.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI) HSP 1 Score: 163 bits (413), Expect = 9.660e-42 Identity = 111/308 (36.04%), Postives = 163/308 (52.92%), Query Frame = 1
Query: 1 VAYYGLLQLFLTRRAVYLLVWDES----KEGNSETAAGGSTGE----LETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSSGGRAVSVEKVASLTSCARGGWWRHVVSSLFWGLAGIVGFKQGWPCDWRTGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDPSGGERHTVPLTLAEDQVPS*QTSSAEVPVKAR---------EDLLSEWRRV---IKDKALTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 864
VAY GLLQ+FLT RAV ++V + + G ET GG E LE L + WLR+ S R+PD D+ILV KCD +A + R+E A WLA + SG + V +E LTSC S + GW CDWR G+ D++ PSL++R++ K G +R +MV+P+SW AL+ L ER P+ + + + A + EDL ++W+ + + +TV N ++ALEGAL IRE++G+++ ++VFLDV WLA++L+P+LNHK
Sbjct: 396 VAYTGLLQMFLTPRAVCVIVCNAESFGQQRGTCET--GGQVKEDCRKLEELRVCDWLRSISRRVPDNDVILVATKCDSVG---GNAGEIGKRIELASRMWLASWVRSGMQPVRLEPGVCLTSCCTTNVCEDGERS-----TRNQAMEGGWTCDWRDGK-DDNPSPSLLHRLVNKPDGGGLRGAQMVIPRSWDIALTVLE---ALERGRDPVEMVVEDLGDADGGDATGTAACKTGLYHGITAEDLRTKWQEAAVGLAGRDITVTNADNALEGALAIREFDGSLVRHETFVFLDVVWLARILKPLLNHK 689
BLAST of mRNA_H-paniculata_contig22809.6088.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI) HSP 1 Score: 163 bits (413), Expect = 9.780e-42 Identity = 111/299 (37.12%), Postives = 159/299 (53.18%), Query Frame = 1
Query: 1 VAYYGLLQLFLTRRAVYLLVWDESKEGNSETAAGGSTGE-----LETLGILPWLRAFSFRLPDGDIILVGNKCDLRSRSQDSAVQAASRVESACCEWLARFSSSGGRAVSVEKVASLTSCARGGWWRHVVSSLFWGLAGIVGFKQGWPCDWRTGRADEDRPPSLINRIIRKGPGDSVRAEKMVLPQSWSFALSFLSDPSGGERHTVPLTLAEDQVPS*QTSSAEVPVKAR---EDLLSEWRRVIKD---KALTVPNPESALEGALTIREYEGTVLSLGSYVFLDVGWLAKVLEPVLNHK 864
VAY GLLQ+FLT R+V +LV + + G + E LE L + WLR+ S R+PD ++ILV KCDL +A + R+E AC WL+ ++ +V +E LTSC G H SS L+ K W CDWR E P SLI R++ K +R +MVLP+SW AL+FL G + L T +A+ V E+L ++W+ + + +TV N E+ALEGAL+IRE++G+++ +VFLDV WLA++L+P+LNHK
Sbjct: 404 VAYTGLLQMFLTPRSVCVLVCNAGEFGEQLGSDNIDQVEEDCRKLEALRVCNWLRSISRRVPDTEVILVATKCDLAG---GNAWEIGRRMEKACRRWLSSWACRNMLSVRLEPGVCLTSCFPVGAGEHGESSSENFLS-----KSCWACDWRDVGGGEPSP-SLIYRLVNKPDKGGLRGVQMVLPRSWDIALTFLDSLEHGRDPVEMVILKSPDSDRGATETAKTTVYQGITVEELSAKWQETVDGLGRRGITVTNAENALEGALSIREFDGSLVPHEKFVFLDVVWLARILKPLLNHK 693 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22809.6088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22809.6088.1 >prot_H-paniculata_contig22809.6088.1 ID=prot_H-paniculata_contig22809.6088.1|Name=mRNA_H-paniculata_contig22809.6088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp VAYYGLLQLFLTRRAVYLLVWDESKEGNSETAAGGSTGELETLGILPWLRback to top mRNA from alignment at H-paniculata_contig22809:1415..3924+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22809.6088.1 ID=mRNA_H-paniculata_contig22809.6088.1|Name=mRNA_H-paniculata_contig22809.6088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2510bp|location=Sequence derived from alignment at H-paniculata_contig22809:1415..3924+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22809:1415..3924+ >mRNA_H-paniculata_contig22809.6088.1 ID=mRNA_H-paniculata_contig22809.6088.1|Name=mRNA_H-paniculata_contig22809.6088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig22809:1415..3924+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |