mRNA_H-paniculata_contig22779.6066.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22779.6066.1
Unique NamemRNA_H-paniculata_contig22779.6066.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22779.6066.1 vs. uniprot
Match: D7FM94_ECTSI (P-type ATPase (PMID 12707717) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM94_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.370e-36
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 1
Query:    1 MSFASSYLFYKSVSWAVPLFLYAFWNGLSGQVFYDYVNSTMWALLYTGLPIVLFGVYDMDVLPETALR 204
            MSFA+SYLFYKSVSWAVPLF+YAF+NGLSGQ FYD+VNS +WALLYTGLPIVL GVYDMDVLP TALR
Sbjct:    1 MSFATSYLFYKSVSWAVPLFVYAFFNGLSGQFFYDWVNSMLWALLYTGLPIVLLGVYDMDVLPSTALR 68          
BLAST of mRNA_H-paniculata_contig22779.6066.1 vs. uniprot
Match: A0A0L0H983_SPIPD (Phospholipid-transporting ATPase n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0H983_SPIPD)

HSP 1 Score: 58.9 bits (141), Expect = 1.670e-8
Identity = 23/59 (38.98%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   25 FYKSVSWAVPLFLYAFWNGLSGQVFYDYVNSTMWALLYTGLPIVLFGVYDMDVLPETAL 201
            F K+V W + LF Y F+ G S Q  YD+  + ++ +++TGLP+++ GV+D D+ P + L
Sbjct:  965 FVKNVVWVMVLFWYQFYAGFSAQSVYDFTYTLLYNIVFTGLPVIMIGVFDQDLSPRSIL 1023          
BLAST of mRNA_H-paniculata_contig22779.6066.1 vs. uniprot
Match: F0WPS0_9STRA (Phospholipid-transporting ATPase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WPS0_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.820e-8
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    1 MSFASSYLFYKSVSWAVPLFLYAFWNGLSGQVFYDYVNSTMWALLYTGLPIVLFGVYDMDVLPETALR 204
            MS    Y+FYK++   +  F Y F++G SGQ FY      ++  +YT LPI++ GV+DMDV P T  R
Sbjct:  959 MSVLVGYMFYKNILMVLAQFYYTFYSGASGQKFYSEFYFQLYNAMYTTLPILVLGVFDMDV-PWTISR 1025          
BLAST of mRNA_H-paniculata_contig22779.6066.1 vs. uniprot
Match: A0A6S7INZ2_PARCT (Phospholipid-transporting ATPase n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7INZ2_PARCT)

HSP 1 Score: 57.0 bits (136), Expect = 7.760e-8
Identity = 24/59 (40.68%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   19 YLFYKSVSWAVPLFLYAFWNGLSGQVFYDYVNSTMWALLYTGLPIVLFGVYDMDVLPET 195
            Y FYK+V + +P +LYAF+N  S Q  Y  V  T + + +T LPI+L+G+++  + P+T
Sbjct:  330 YFFYKNVVFTIPQYLYAFFNAYSQQTLYQSVFLTTFNICWTSLPILLYGIFEQHLRPDT 388          
BLAST of mRNA_H-paniculata_contig22779.6066.1 vs. uniprot
Match: C4LW20_ENTHI (Phospholipid-transporting ATPase n=8 Tax=Entamoeba TaxID=5758 RepID=C4LW20_ENTHI)

HSP 1 Score: 57.0 bits (136), Expect = 7.930e-8
Identity = 25/67 (37.31%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 MSFASSYLFYKSVSWAVPLFLYAFWNGLSGQVFYDYVNSTMWALLYTGLPIVLFGVYDMDVLPETAL 201
            +S+   Y FYK++   +  F + F+NG SG   ++    +++ +L+T LPI++FG++D DVLPET +
Sbjct:  834 LSYVILYSFYKNIVMYLTQFSFLFFNGYSGTSLFENWTLSIYNVLFTLLPIIVFGIFDRDVLPETLI 900          
BLAST of mRNA_H-paniculata_contig22779.6066.1 vs. uniprot
Match: T2M336_HYDVU (Phospholipid-transporting ATPase n=6 Tax=Hydra vulgaris TaxID=6087 RepID=T2M336_HYDVU)

HSP 1 Score: 57.0 bits (136), Expect = 7.940e-8
Identity = 23/61 (37.70%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   19 YLFYKSVSWAVPLFLYAFWNGLSGQVFYDYVNSTMWALLYTGLPIVLFGVYDMDVLPETAL 201
            Y FYK++++  P F++  +NG SGQ  Y  V  T + +L+T +PI+L+G+++ D+  ET +
Sbjct:  852 YFFYKNIAFITPQFIFQMYNGYSGQPLYAGVFLTTFNILFTSMPILLYGIFEKDLKEETLM 912          
BLAST of mRNA_H-paniculata_contig22779.6066.1 vs. uniprot
Match: A0A024GGU9_9STRA (Phospholipid-transporting ATPase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GGU9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 7.960e-8
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 1
Query:    1 MSFASSYLFYKSVSWAVPLFLYAFWNGLSGQVFYDYVNSTMWALLYTGLPIVLFGVYDMDV 183
            MS    Y+FYK++   +  F Y F++G SGQ FY      ++  +YT LPI++ GV+DMDV
Sbjct:  961 MSVLVGYMFYKNILMVLAQFYYTFYSGASGQKFYSEFYFQLYNAMYTTLPILVLGVFDMDV 1021          
BLAST of mRNA_H-paniculata_contig22779.6066.1 vs. uniprot
Match: A0A507F1B5_9FUNG (P-type phospholipid transporter n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507F1B5_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 2.040e-7
Identity = 22/59 (37.29%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   25 FYKSVSWAVPLFLYAFWNGLSGQVFYDYVNSTMWALLYTGLPIVLFGVYDMDVLPETAL 201
            F K+V W + LF Y F+ G S Q  YD+  + ++ +++TGLP+++ GV+D D+   + L
Sbjct: 1491 FVKNVVWVMVLFWYQFYAGFSAQSVYDFTYTLLYNIVFTGLPVIMLGVFDQDLSSRSIL 1549          
BLAST of mRNA_H-paniculata_contig22779.6066.1 vs. uniprot
Match: Q54L55_DICDI (Phospholipid-transporting ATPase n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54L55_DICDI)

HSP 1 Score: 54.3 bits (129), Expect = 7.100e-7
Identity = 24/68 (35.29%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    1 MSFASSYLFYKSVSWAVPLFLYAFWNGLSGQVFYDYVNSTMWALLYTGLPIVLFGVYDMDVLPETALR 204
            +S    Y F+K+++  +  F +A  N  SG  +YD +NS ++ L +T LPI++ GV+D D+ P+  L+
Sbjct:  923 LSLVICYFFFKNLASCLLQFWFAINNQFSGTTYYDSINSMLFNLTFTSLPIIVVGVFDRDLKPQFLLK 990          
BLAST of mRNA_H-paniculata_contig22779.6066.1 vs. uniprot
Match: A0A7R9U359_9STRA (Phospholipid-transporting ATPase n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U359_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.130e-7
Identity = 24/67 (35.82%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    1 MSFASSYLFYKSVSWAVPLFLYAFWNGLSGQVFYDYVNSTMWALLYTGLPIVLFGVYDMDVLPETAL 201
            M+ A  Y+FYK++ + +  F  AFWN +SGQ +    +  ++ + +TG+P++LFG++D DV   +A+
Sbjct: 1066 MAKAVLYIFYKNLLFTMTNFWMAFWNLMSGQKYLIEASVQLYNVFFTGVPVLLFGIWDRDVKDTSAI 1132          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22779.6066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM94_ECTSI1.370e-3686.76P-type ATPase (PMID 12707717) n=2 Tax=Ectocarpus T... [more]
A0A0L0H983_SPIPD1.670e-838.98Phospholipid-transporting ATPase n=1 Tax=Spizellom... [more]
F0WPS0_9STRA5.820e-842.65Phospholipid-transporting ATPase n=1 Tax=Albugo la... [more]
A0A6S7INZ2_PARCT7.760e-840.68Phospholipid-transporting ATPase n=2 Tax=Paramuric... [more]
C4LW20_ENTHI7.930e-837.31Phospholipid-transporting ATPase n=8 Tax=Entamoeba... [more]
T2M336_HYDVU7.940e-837.70Phospholipid-transporting ATPase n=6 Tax=Hydra vul... [more]
A0A024GGU9_9STRA7.960e-842.62Phospholipid-transporting ATPase n=1 Tax=Albugo ca... [more]
A0A507F1B5_9FUNG2.040e-737.29P-type phospholipid transporter n=1 Tax=Spizellomy... [more]
Q54L55_DICDI7.100e-735.29Phospholipid-transporting ATPase n=1 Tax=Dictyoste... [more]
A0A7R9U359_9STRA7.130e-735.82Phospholipid-transporting ATPase n=2 Tax=Pinguioco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22779contigH-paniculata_contig22779:651..1233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue2e-26
Seed eggNOG ortholog2880.D7FM94
Preferred nameDNF3
KEGG rclassRC00002
KEGG koko:K01509,ko:K01530,ko:K14802
KEGG TC3.A.3.8
KEGG ReactionR00086
KEGG Pathwayko00230,ko04742,map00230,map04742
Hectar predicted targeting categorysignal peptide
GOsGO:0000749,GO:0003674,GO:0003824,GO:0004012,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005798,GO:0005802,GO:0005886,GO:0005937,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006886,GO:0006892,GO:0006900,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0010033,GO:0010876,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015914,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019236,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030427,GO:0031136,GO:0031137,GO:0031139,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032456,GO:0033036,GO:0034204,GO:0034613,GO:0042221,GO:0042623,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043332,GO:0043492,GO:0043900,GO:0043902,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045332,GO:0046907,GO:0046999,GO:0048193,GO:0048194,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051286,GO:0051641,GO:0051649,GO:0051716,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0070867,GO:0070887,GO:0071310,GO:0071444,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0097035,GO:0097708,GO:0098791,GO:0120025,GO:0120038,GO:2000241,GO:2000243
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
Ec32 ortholog descriptionP-type ATPase (PMID 12707717)
Ec32 orthologEc-00_002770.1
EC3.6.1.3,3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Exons2
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929633.8145306-CDS-H-paniculata_contig22779:650..7751622929633.8145306-CDS-H-paniculata_contig22779:650..775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22779 651..775 -
1691480944.4931998-CDS-H-paniculata_contig22779:650..7751691480944.4931998-CDS-H-paniculata_contig22779:650..775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22779 651..775 -
1622929633.82789-CDS-H-paniculata_contig22779:1154..12331622929633.82789-CDS-H-paniculata_contig22779:1154..1233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22779 1155..1233 -
1691480944.5066197-CDS-H-paniculata_contig22779:1154..12331691480944.5066197-CDS-H-paniculata_contig22779:1154..1233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22779 1155..1233 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22779.6066.1prot_H-paniculata_contig22779.6066.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22779 651..1233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22779.6066.1

>prot_H-paniculata_contig22779.6066.1 ID=prot_H-paniculata_contig22779.6066.1|Name=mRNA_H-paniculata_contig22779.6066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MSFASSYLFYKSVSWAVPLFLYAFWNGLSGQVFYDYVNSTMWALLYTGLP
IVLFGVYDMDVLPETALR
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mRNA from alignment at H-paniculata_contig22779:651..1233-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22779.6066.1 ID=mRNA_H-paniculata_contig22779.6066.1|Name=mRNA_H-paniculata_contig22779.6066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=583bp|location=Sequence derived from alignment at H-paniculata_contig22779:651..1233- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTTTCGCGTCGAGCTACCTCTTCTACAAGTCCGTCAGCTGGGCAGT ACCGCTCTTTCTCTACGCCTTCTGGAACGGTACGTACCAATTTTCTTCTC GTCATATTAGATTATCTTGGTGGAGTACTATCGTCAAGCCGAAGATCGAG AAATTCAAGTGATCCCGATAAAATTGTCCACCAACCGTATTTCCATGGTA AAACAAACCAAGTTTTGCGACTTCACCGTCATCTTCCATTATGAAACAAG GGGGCTTTTGTCATATTTGAAAAATATTCCGAAACGAAGACATATATATA TATATATTTTTGTCCATGTCCACCTCACCTCTTCCCATTCTAGATGACAT ACTTGGTCAATATTCATGTGTAGAAGCCAACGCCTACACCCCCCCCCCCA CACACACATCCCTACCCCTTTACCTTTTGTGATGCCACACTACACCATCA TGTGTCAGGCTTGAGCGGGCAAGTGTTCTACGACTACGTGAACTCCACTA TGTGGGCTCTCCTGTACACAGGGCTTCCGATCGTCCTGTTTGGCGTGTAC GACATGGATGTTTTGCCGGAGACAGCCCTACGA
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Coding sequence (CDS) from alignment at H-paniculata_contig22779:651..1233-

>mRNA_H-paniculata_contig22779.6066.1 ID=mRNA_H-paniculata_contig22779.6066.1|Name=mRNA_H-paniculata_contig22779.6066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig22779:651..1233- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTTTCGCGTCGAGCTACCTCTTCTACAAGTCCGTCAGCTGGGCAGT
ACCGCTCTTTCTCTACGCCTTCTGGAACGATGAGTTTCGCGTCGAGCTAC
CTCTTCTACAAGTCCGTCAGCTGGGCAGTACCGCTCTTTCTCTACGCCTT
CTGGAACGGCTTGAGCGGGCAAGTGTTCTACGACTACGTGAACTCCACTA
TGTGGGCTCTCCTGTACACAGGGCTTCCGATCGTCCTGTTTGGCGTGTAC
GACATGGATGTTTTGCCGGAGACAGCCCTACGAGCTTGAGCGGGCAAGTG
TTCTACGACTACGTGAACTCCACTATGTGGGCTCTCCTGTACACAGGGCT
TCCGATCGTCCTGTTTGGCGTGTACGACATGGATGTTTTGCCGGAGACAG
CCCTACGA
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