mRNA_H-paniculata_contig22756.6062.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22756.6062.1
Unique NamemRNA_H-paniculata_contig22756.6062.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22756.6062.1 vs. uniprot
Match: A0A7R9ZZ96_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7R9ZZ96_9DINO)

HSP 1 Score: 76.3 bits (186), Expect = 1.230e-14
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   31 YLPQPTFVPRKGAPENAPEDFGYLATFVVNGRDRVTELVILDAQKISKGPVCRLPLKGFIPHTLHG 228
            +L +P + PR+GA     ED GY+ + ++NGR + TE  + DA  I  GP+CR+PL+ FIPH LHG
Sbjct:  254 FLGEPMYCPRRGAKTGEAEDDGYVVSILLNGRTKTTEFCVFDASNILTGPICRVPLRTFIPHALHG 319          
BLAST of mRNA_H-paniculata_contig22756.6062.1 vs. uniprot
Match: A0A7S3QIX9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QIX9_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.010e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   40 QPTFVPRKGAPENAPEDFGYLATFVVNGRDRVTELVILDAQKISKGPVCRLPLKGFIPHTLHG 228
            +P F  RK    N  ED GY+ + ++NG+++ +E+VILDA KIS+GPV R+PL   IPH LHG
Sbjct:  519 EPMFAQRKSDASNGEEDDGYIISILLNGKEKKSEIVILDAAKISEGPVARVPLGVAIPHGLHG 581          
BLAST of mRNA_H-paniculata_contig22756.6062.1 vs. uniprot
Match: A0A7S4N2C8_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N2C8_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.270e-12
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   19 LPFFYLPQPTFVPRKGAPENAPE--DFGYLATFVVNGRDRVTELVILDAQ---KISKGPVCRLPLKGFIPHTLHG 228
            LP  ++ +P F P+ GA  + PE  D GY+ TFV NGRD  T++VI D +    + KGPV RLP+  +IP  LHG
Sbjct:   98 LPHEFVGEPIFCPKAGADASQPECEDRGYVVTFVTNGRDLTTDMVIFDVEGKGALEKGPVARLPMPTYIPPGLHG 172          
BLAST of mRNA_H-paniculata_contig22756.6062.1 vs. uniprot
Match: A0A813FAK8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FAK8_POLGL)

HSP 1 Score: 68.6 bits (166), Expect = 9.590e-12
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   40 QPTFVPRKGAPENAPEDFGYLATFVVNGRDRVTELVILDAQKISKGPVCRLPLKGFIPHTL 222
            QP FVP+ GA E   ED GYL T V +G  + +E+V+LDAQ +SKGPVCR PL+  +PH L
Sbjct:  537 QPLFVPKPGAEE---EDAGYLLTVVFDGAAQSSEVVVLDAQAVSKGPVCRFPLQVALPHGL 594          
BLAST of mRNA_H-paniculata_contig22756.6062.1 vs. uniprot
Match: A0A7S2J5X0_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2J5X0_9DINO)

HSP 1 Score: 68.2 bits (165), Expect = 1.300e-11
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   40 QPTFVPRKGAPENAPEDFGYLATFVVNGRDRVTELVILDAQKISKGPVCRLPLKGFIPHTL 222
            QP FVPR+G      ED GYL T V++G  R +E+V+LDA+K+S GPVCR+PL+  +PH L
Sbjct:  413 QPVFVPREG---REGEDDGYLLTLVLDGAARRSEVVVLDARKVSAGPVCRIPLEAPLPHGL 470          
BLAST of mRNA_H-paniculata_contig22756.6062.1 vs. uniprot
Match: A0A7S4N1Z6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N1Z6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.310e-11
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   19 LPFFYLPQPTFVPRKGAPENAPE--DFGYLATFVVNGRDRVTELVILDAQ---KISKGPVCRLPLKGFIPHTLHG 228
            LP  ++ +P F P+ GA  + PE  D GY+ TFV NGRD  T++VI D +    + KGPV RLP+  +IP  LHG
Sbjct:  526 LPHEFVGEPIFCPKAGADASQPECEDRGYVVTFVTNGRDLTTDMVIFDVEGKGALEKGPVARLPMPTYIPPGLHG 600          
BLAST of mRNA_H-paniculata_contig22756.6062.1 vs. uniprot
Match: A0A1L2D737_SCRTR (9-cis-epoxycarotenoid dioxygenase n=1 Tax=Scrippsiella trochoidea TaxID=71861 RepID=A0A1L2D737_SCRTR)

HSP 1 Score: 66.6 bits (161), Expect = 4.530e-11
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 TYLPTHLPFFYLPQPTFVPR-KGAPENAPEDFGYLATFVVNGRDRVTELVILDAQKISKGPVCRLPLKGFIPHTLHG 228
            T++P   P  +L +  FVPR     E A ED GY+   + +GR R +EL++ DAQ ++ GP+CR+PL+G +PH LHG
Sbjct:  443 TWMPE--PHQFLGESLFVPRCTPDAEAAKEDDGYVVGLLFDGRARRSELLVFDAQSVATGPICRVPLRGQLPHGLHG 517          
BLAST of mRNA_H-paniculata_contig22756.6062.1 vs. uniprot
Match: K9S6M5_9CYAN (Dioxygenase n=1 Tax=Geitlerinema sp. PCC 7407 TaxID=1173025 RepID=K9S6M5_9CYAN)

HSP 1 Score: 61.2 bits (147), Expect = 3.570e-9
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   31 YLPQPTFVPRKGAPENAPEDFGYLATFVVNGRDRVTELVILDAQKISKGPVCRLPLKGFIPHTLHG 228
            ++ +P FVP+   P +  ED G+L + V +  +  +ELVILDAQ++S GP+ RL LK  +P+ LHG
Sbjct:  426 FISEPIFVPK---PSSQSEDDGWLLSMVYDSANHCSELVILDAQQVSAGPIARLRLKHHVPYGLHG 488          
BLAST of mRNA_H-paniculata_contig22756.6062.1 vs. uniprot
Match: A0A6P0K6Z2_9CYAN (Dioxygenase n=4 Tax=unclassified Symploca TaxID=2620434 RepID=A0A6P0K6Z2_9CYAN)

HSP 1 Score: 60.8 bits (146), Expect = 4.880e-9
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   31 YLPQPTFVPRKGAPENAPEDFGYLATFVVNGRDRVTELVILDAQKISKGPVCRLPLKGFIPHTLHG 228
            Y+ +P FVP+   P    ED G++ T V + +   +ELVILDA+ +S+GP+ RL LK  IP+ LHG
Sbjct:  428 YVSEPVFVPK---PSGLQEDDGWVLTMVYDAQHHRSELVILDARDLSRGPIARLHLKHHIPYGLHG 490          
BLAST of mRNA_H-paniculata_contig22756.6062.1 vs. uniprot
Match: A0A350X801_9CYAN (Dioxygenase (Fragment) n=1 Tax=Cyanobacteria bacterium UBA11372 TaxID=2055768 RepID=A0A350X801_9CYAN)

HSP 1 Score: 57.8 bits (138), Expect = 8.600e-9
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   31 YLPQPTFVPRKGAPENAPEDFGYLATFVVNGRDRVTELVILDAQKISKGPVCRLPLKGFIPHTLHG 228
            ++ +P FVPR   PE   ED G+L T V +     ++L ILDA+ +++GPV RL LK  +P+ LHG
Sbjct:   60 FVSEPVFVPR---PEAMNEDDGWLLTLVYDSAHHRSDLAILDARDLNRGPVARLHLKHHVPYGLHG 122          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22756.6062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9ZZ96_9DINO1.230e-1446.97Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A0A7S3QIX9_9STRA2.010e-1250.79Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4N2C8_9STRA2.270e-1246.67Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A813FAK8_POLGL9.590e-1255.74Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S2J5X0_9DINO1.300e-1154.10Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A7S4N1Z6_9STRA1.310e-1146.67Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1L2D737_SCRTR4.530e-1144.169-cis-epoxycarotenoid dioxygenase n=1 Tax=Scrippsi... [more]
K9S6M5_9CYAN3.570e-943.94Dioxygenase n=1 Tax=Geitlerinema sp. PCC 7407 TaxI... [more]
A0A6P0K6Z2_9CYAN4.880e-945.45Dioxygenase n=4 Tax=unclassified Symploca TaxID=26... [more]
A0A350X801_9CYAN8.600e-943.94Dioxygenase (Fragment) n=1 Tax=Cyanobacteria bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22756contigH-paniculata_contig22756:238..468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.0
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog1173025.GEI7407_0921
KEGG rclassRC00912
KEGG koko:K00464,ko:K11159
KEGG ReactionR09601
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM Retinal pigment epithelial membrane protein
EggNOG OGs1G11V@1117,1H8IF@1150,COG3670@1,COG3670@2
Ec32 ortholog descriptionCarotenoid oxygenase
Ec32 orthologEc-21_004930.1
EC1.13.11.75
COG Functional cat.Q
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929633.046721-CDS-H-paniculata_contig22756:237..4681622929633.046721-CDS-H-paniculata_contig22756:237..468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22756 238..468 +
1691480944.270379-CDS-H-paniculata_contig22756:237..4681691480944.270379-CDS-H-paniculata_contig22756:237..468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22756 238..468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22756.6062.1prot_H-paniculata_contig22756.6062.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22756 238..468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22756.6062.1

>prot_H-paniculata_contig22756.6062.1 ID=prot_H-paniculata_contig22756.6062.1|Name=mRNA_H-paniculata_contig22756.6062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
TYLPTHLPFFYLPQPTFVPRKGAPENAPEDFGYLATFVVNGRDRVTELVI
LDAQKISKGPVCRLPLKGFIPHTLHG*
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mRNA from alignment at H-paniculata_contig22756:238..468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22756.6062.1 ID=mRNA_H-paniculata_contig22756.6062.1|Name=mRNA_H-paniculata_contig22756.6062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig22756:238..468+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTATCTACCTACCCACCTACCTTTTTTTTACCTACCCCAGCCGACTTT TGTTCCTCGGAAGGGCGCCCCCGAGAACGCGCCAGAGGACTTCGGCTACC TAGCTACCTTCGTTGTCAACGGTCGAGATCGCGTCACCGAGTTGGTTATC CTAGACGCCCAGAAGATCTCCAAGGGGCCTGTGTGTCGGCTGCCGTTAAA GGGGTTCATTCCGCATACGCTGCATGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig22756:238..468+

>mRNA_H-paniculata_contig22756.6062.1 ID=mRNA_H-paniculata_contig22756.6062.1|Name=mRNA_H-paniculata_contig22756.6062.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig22756:238..468+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTATCTACCTACCCACCTACCTTTTTTTTACCTACCCCAGCCGACTTT
TGTTCCTCGGAAGGGCGCCCCCGAGAACGCGCCAGAGGACTTCGGCTACC
TAGCTACCTTCGTTGTCAACGGTCGAGATCGCGTCACCGAGTTGGTTATC
CTAGACGCCCAGAAGATCTCCAAGGGGCCTGTGTGTCGGCTGCCGTTAAA
GGGGTTCATTCCGCATACGCTGCATGGGTGAACCTATCTACCTACCCACC
TACCTTTTTTTTACCTACCCCAGCCGACTTTTGTTCCTCGGAAGGGCGCC
CCCGAGAACGCGCCAGAGGACTTCGGCTACCTAGCTACCTTCGTTGTCAA
CGGTCGAGATCGCGTCACCGAGTTGGTTATCCTAGACGCCCAGAAGATCT
CCAAGGGGCCTGTGTGTCGGCTGCCGTTAAAGGGGTTCATTCCGCATACG
CTGCATGGGTGA
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