mRNA_H-paniculata_contig22705.6047.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22705.6047.1
Unique NamemRNA_H-paniculata_contig22705.6047.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22705.6047.1 vs. uniprot
Match: A0A6H5KCN7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN7_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 4.580e-85
Identity = 124/143 (86.71%), Postives = 130/143 (90.91%), Query Frame = 1
Query:    1 CSVLGGNVSDQCGSPGYVAPEILRGAPYGTPVDMWSIGVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTSDHAKDLIRKLLLVDERRRMTARDAVHHPWLLTTGQSLASHNLGKNLEQLRIFNATRKLRGAIRS 429
            CSVL G VS+QCGSPGYVAPEILR  PYGT VDMWS+GVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTS  AKDLIRKLLLVD  +RMTA  A  HPWLLTTG+SLASHNLGKNL+QLRIFNATRKLRGAI+S
Sbjct:   75 CSVLNGPVSEQCGSPGYVAPEILRALPYGTSVDMWSVGVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTSLEAKDLIRKLLLVDPAKRMTATQAAEHPWLLTTGESLASHNLGKNLDQLRIFNATRKLRGAIQS 217          
BLAST of mRNA_H-paniculata_contig22705.6047.1 vs. uniprot
Match: D8LK21_ECTSI (Possible Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK21_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 7.180e-82
Identity = 123/143 (86.01%), Postives = 128/143 (89.51%), Query Frame = 1
Query:    1 CSVLGGNVSDQCGSPGYVAPEILRGAPYGTPVDMWSIGVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTSDHAKDLIRKLLLVDERRRMTARDAVHHPWLLTTGQSLASHNLGKNLEQLRIFNATRKLRGAIRS 429
            CSVL G VS+QCGSPGYVAPEILR  PYGT VDMWS+GVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTS  AKDLIRKLLLVD  +RMTA  A  HPWLLTTG SLA HNLGKNL+QLRIFNATRKLRGAI+S
Sbjct:  232 CSVLNGPVSEQCGSPGYVAPEILRALPYGTSVDMWSVGVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTSLEAKDLIRKLLLVDPAKRMTATQAAEHPWLLTTGASLAGHNLGKNLDQLRIFNATRKLRGAIQS 374          
BLAST of mRNA_H-paniculata_contig22705.6047.1 vs. uniprot
Match: D8LP07_ECTSI (Possible CDPK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP07_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 5.480e-69
Identity = 101/140 (72.14%), Postives = 115/140 (82.14%), Query Frame = 1
Query:   10 LGGNVSDQCGSPGYVAPEILRGAPYGTPVDMWSIGVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTSDHAKDLIRKLLLVDERRRMTARDAVHHPWLLTTGQSLASHNLGKNLEQLRIFNATRKLRGAIRS 429
            +GG VS QCG+PGYVAPEILR   YGT VDMWSIGVI+Y LLGGYPPFHDENQTRLFR+IKAG+FKFH EYW + S+ AKDLIR+LL VD ++R+TA  AV HPWLL+    L  HNLG NLEQLR+FNA RKLR AI+S
Sbjct:    1 MGGFVSTQCGTPGYVAPEILRAESYGTSVDMWSIGVIVYILLGGYPPFHDENQTRLFRKIKAGNFKFHPEYWQSISNEAKDLIRRLLTVDPKKRLTAAQAVTHPWLLSKDADLLKHNLGVNLEQLRLFNARRKLRAAIKS 140          
BLAST of mRNA_H-paniculata_contig22705.6047.1 vs. uniprot
Match: A0A6H5K8A8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A8_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 3.820e-68
Identity = 103/142 (72.54%), Postives = 117/142 (82.39%), Query Frame = 1
Query:    4 SVLGGNVSDQCGSPGYVAPEILRGAPYGTPVDMWSIGVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTSDHAKDLIRKLLLVDERRRMTARDAVHHPWLLTTGQSLASHNLGKNLEQLRIFNATRKLRGAIRS 429
            S++GG VS QCG+PGYVAPEILR   YGT VDMWSIGVI+Y LLGGYPPFHDENQTRLFR+IKAG+FKFH EYW +TS  AKDLIR+LL VD ++R+TA  AV HPWLL+    L  HNLG NLEQLR+FNA RKLR AI+S
Sbjct:  209 SIMGGFVSTQCGTPGYVAPEILRAESYGTSVDMWSIGVIVYILLGGYPPFHDENQTRLFRKIKAGNFKFHPEYWQSTSSEAKDLIRRLLTVDPKKRLTAAQAVTHPWLLSKDDDLLKHNLGVNLEQLRLFNARRKLRAAIKS 350          
BLAST of mRNA_H-paniculata_contig22705.6047.1 vs. uniprot
Match: A0A835YZ60_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ60_9STRA)

HSP 1 Score: 210 bits (535), Expect = 4.660e-65
Identity = 99/139 (71.22%), Postives = 115/139 (82.73%), Query Frame = 1
Query:   13 GGNVSDQCGSPGYVAPEILRGAPYGTPVDMWSIGVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTSDHAKDLIRKLLLVDERRRMTARDAVHHPWLLTTGQSLASHNLGKNLEQLRIFNATRKLRGAIRS 429
            G  V+ QCG+P YVAPEILR  PYGT VDMWSIGVIIY LLGGYPPFHDENQTRLFR+I+AG F+FH+EYW + S  AKDLI +LL VD+  R+TAR+AV HPWLLT+   LA+ NLGKNLEQL++FNA RKLR AI+S
Sbjct:  194 GSMVTTQCGTPAYVAPEILRHRPYGTSVDMWSIGVIIYILLGGYPPFHDENQTRLFRKIRAGKFEFHNEYWGSISSDAKDLISRLLTVDQHSRLTAREAVSHPWLLTSDTDLAARNLGKNLEQLKLFNARRKLRAAIKS 332          
BLAST of mRNA_H-paniculata_contig22705.6047.1 vs. uniprot
Match: A0A835YRH8_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH8_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.460e-63
Identity = 95/136 (69.85%), Postives = 111/136 (81.62%), Query Frame = 1
Query:   22 VSDQCGSPGYVAPEILRGAPYGTPVDMWSIGVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTSDHAKDLIRKLLLVDERRRMTARDAVHHPWLLTTGQSLASHNLGKNLEQLRIFNATRKLRGAIRS 429
            V+ QCG+P YVAPEILR  PYGT VDMWSIGVIIY LLGGYPPFHDENQTRLFR+I+AGS+KFH EYW   S+ AKDLI +LL VD  +R+TA +AV HPWLL+    LA+ +L KNLEQL++FNA RKLR AI+S
Sbjct:    2 VTTQCGTPAYVAPEILRHKPYGTSVDMWSIGVIIYILLGGYPPFHDENQTRLFRKIRAGSYKFHSEYWGGVSNEAKDLISRLLTVDVSKRLTAAEAVVHPWLLSKDIDLAARSLEKNLEQLKLFNARRKLRAAIKS 137          
BLAST of mRNA_H-paniculata_contig22705.6047.1 vs. uniprot
Match: D8LEF0_ECTSI (Myosin light chain kinase (MLCK) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF0_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 1.470e-59
Identity = 97/142 (68.31%), Postives = 113/142 (79.58%), Query Frame = 1
Query:    4 SVLGGNVSDQCGSPGYVAPEILRGAPYGTPVDMWSIGVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTSDHAKDLIRKLLLVDERRRMTARDAVHHPWLLTTGQSLASHNLGKNLEQLRIFNATRKLRGAIRS 429
            SVL G V+DQCG+PGYVAPEILR  PYGT VDMWSIGVIIY +L GYPPFHDE+Q RL+R+IKAG ++F  EYW++ S  AKDLIRKLL VD  RR+TA +A  HPWL T   +L  H+LG  LE+L+IFNATRKLR AIRS
Sbjct:  529 SVLDGYVTDQCGTPGYVAPEILRSRPYGTSVDMWSIGVIIYIILAGYPPFHDEDQNRLYRKIKAGHYRFDPEYWNDVSSEAKDLIRKLLTVDPTRRLTAAEACEHPWLSTARGNLTQHDLGAGLEKLKIFNATRKLRAAIRS 670          
BLAST of mRNA_H-paniculata_contig22705.6047.1 vs. uniprot
Match: A0A6H5K8I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I6_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 1.670e-58
Identity = 96/142 (67.61%), Postives = 114/142 (80.28%), Query Frame = 1
Query:    4 SVLGGNVSDQCGSPGYVAPEILRGAPYGTPVDMWSIGVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTSDHAKDLIRKLLLVDERRRMTARDAVHHPWLLTTGQSLASHNLGKNLEQLRIFNATRKLRGAIRS 429
            SVL G V+DQCG+PGYVAPEILRG PYGT VDMWSIGVIIY +L GYPPF DE+Q RL+R+IKAG ++F  EYW++ S  AKDLIRKLL+VD  RR+TA +A  HPWL T   +L  H+LG  LE+L+IFNATRKLR AIR+
Sbjct:  524 SVLDGYVTDQCGTPGYVAPEILRGHPYGTSVDMWSIGVIIYIILAGYPPFCDEDQHRLYRKIKAGHYRFEPEYWNDVSSEAKDLIRKLLIVDPTRRLTAAEACEHPWLSTARGNLTKHDLGAGLEKLKIFNATRKLRAAIRT 665          
BLAST of mRNA_H-paniculata_contig22705.6047.1 vs. uniprot
Match: A0A7S2XV40_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV40_9STRA)

HSP 1 Score: 181 bits (458), Expect = 2.690e-53
Identity = 82/137 (59.85%), Postives = 101/137 (73.72%), Query Frame = 1
Query:   19 NVSDQCGSPGYVAPEILRGAPYGTPVDMWSIGVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTSDHAKDLIRKLLLVDERRRMTARDAVHHPWLLTTGQSLASHNLGKNLEQLRIFNATRKLRGAIRS 429
            N++ QCG+PGYVAPEIL G PYG  VDMWSIGVI Y LLGGYPPFHDE Q+ LF +I+AG F FH EYW   S+ AKDLIRKLL VD  +R+TA +A+ HPW+    ++LA+ NL   L +LR FNA RK R  +++
Sbjct:  183 NLTTQCGTPGYVAPEILNGVPYGLAVDMWSIGVITYILLGGYPPFHDEKQSNLFAKIRAGDFVFHPEYWDPVSEEAKDLIRKLLTVDPNKRITAAEAMQHPWVTGADETLAARNLDSQLRELRRFNARRKFRSGVKA 319          
BLAST of mRNA_H-paniculata_contig22705.6047.1 vs. uniprot
Match: A0A6H5JU42_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU42_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 1.620e-51
Identity = 78/136 (57.35%), Postives = 103/136 (75.74%), Query Frame = 1
Query:   22 VSDQCGSPGYVAPEILRGAPYGTPVDMWSIGVIIYTLLGGYPPFHDENQTRLFRRIKAGSFKFHDEYWSNTSDHAKDLIRKLLLVDERRRMTARDAVHHPWLLTTGQSLASHNLGKNLEQLRIFNATRKLRGAIRS 429
            +S QCG+PGYVAPE+L+G  YG PVD+WSIGVI Y LLGGYPPFHD+NQ +L+++IK G   FH +YWS  SD AKDLI+K+L +D+ +R+TA  A+ HPW++     L  H+LG N+ +LR+FNA RK + AI S
Sbjct:  224 LSAQCGTPGYVAPEVLKGEVYGKPVDIWSIGVITYILLGGYPPFHDDNQAKLYQKIKKGKVLFHPQYWSTVSDEAKDLIKKMLTLDKDKRITAEQALEHPWVVGDAAELEKHDLGANMGKLRLFNARRKFKSAISS 359          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22705.6047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCN7_9PHAE4.580e-8586.71Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LK21_ECTSI7.180e-8286.01Possible Ca2+/calmodulin-dependent protein kinase,... [more]
D8LP07_ECTSI5.480e-6972.14Possible CDPK n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5K8A8_9PHAE3.820e-6872.54Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835YZ60_9STRA4.660e-6571.22Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835YRH8_9STRA1.460e-6369.85Kinase-like domain-containing protein n=1 Tax=Trib... [more]
D8LEF0_ECTSI1.470e-5968.31Myosin light chain kinase (MLCK) n=1 Tax=Ectocarpu... [more]
A0A6H5K8I6_9PHAE1.670e-5867.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2XV40_9STRA2.690e-5359.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5JU42_9PHAE1.620e-5157.35Protein kinase domain-containing protein n=2 Tax=E... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22705contigH-paniculata_contig22705:947..3220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.5
Seed ortholog evalue1.1e-42
Seed eggNOG ortholog2880.D8LE50
KEGG koko:K04373,ko:K04445
KEGG Pathwayko04010,ko04114,ko04150,ko04261,ko04668,ko04713,ko04714,ko04720,ko04722,ko04914,ko04931,ko05200,ko05206,ko05219,map04010,map04114,map04150,map04261,map04668,map04713,map04714,map04720,map04722,map04914,map04931,map05200,map05206,map05219
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0603@1,KOG0603@2759
EC2.7.11.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03019
Exons3
Model size432
Cds size429
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22705.6047.1prot_H-paniculata_contig22705.6047.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22705 947..3218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929631.484931-CDS-H-paniculata_contig22705:946..10361622929631.484931-CDS-H-paniculata_contig22705:946..1036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22705 947..1036 +
1691480943.718893-CDS-H-paniculata_contig22705:946..10361691480943.718893-CDS-H-paniculata_contig22705:946..1036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22705 947..1036 +
1622929631.4986594-CDS-H-paniculata_contig22705:2484..26431622929631.4986594-CDS-H-paniculata_contig22705:2484..2643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22705 2485..2643 +
1691480943.735567-CDS-H-paniculata_contig22705:2484..26431691480943.735567-CDS-H-paniculata_contig22705:2484..2643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22705 2485..2643 +
1622929631.522634-CDS-H-paniculata_contig22705:3038..32181622929631.522634-CDS-H-paniculata_contig22705:3038..3218Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22705 3039..3218 +
1691480943.7456698-CDS-H-paniculata_contig22705:3038..32181691480943.7456698-CDS-H-paniculata_contig22705:3038..3218Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22705 3039..3218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22705.6047.1

>prot_H-paniculata_contig22705.6047.1 ID=prot_H-paniculata_contig22705.6047.1|Name=mRNA_H-paniculata_contig22705.6047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
CSVLGGNVSDQCGSPGYVAPEILRGAPYGTPVDMWSIGVIIYTLLGGYPP
FHDENQTRLFRRIKAGSFKFHDEYWSNTSDHAKDLIRKLLLVDERRRMTA
RDAVHHPWLLTTGQSLASHNLGKNLEQLRIFNATRKLRGAIRS
back to top

mRNA from alignment at H-paniculata_contig22705:947..3220+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22705.6047.1 ID=mRNA_H-paniculata_contig22705.6047.1|Name=mRNA_H-paniculata_contig22705.6047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2274bp|location=Sequence derived from alignment at H-paniculata_contig22705:947..3220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCAGTGTTCTTGGTGGAAACGTTTCGGACCAGTGTGGCTCGCCTGGATA TGTGGCGCCGGAGATCTTGAGGGGAGCTCCGTACGGCACGGTAAGGCGTG AAGATAGGGGTAACGAAGTGACAAGGAGAGCAGAGTGTTTGGCTTTTTGC TATCAAGGGAAGATTGCTCCAGCTGTTGTTTGATGTATTATTAGTATTCG ATTCATTATGTATACATTAATATATATATATATATATAGTGAAGTGACTG CGGCCACGGCGACGAACTTACAAGTTGGTTTTTGTTGTTTTTGTGCTGCC GGCCGAATAGATGACGGCACTATTGAAGTTTAATTGTGGCAATTGTGCGT CCCCGGGACACATACAAATAATAATTGGCGTATTCGCCACGAAAATGAAC AAAGTATTCGCCGAGTTTCGAAATGAGTGGACACATGAAATAAAGTACCC ACCTGTCCATTCGATTTACGAGTATTATTACAAGTAGCAGTCGGGGATGG TCGGGGGCACGTAGAATACACGAGCTCCTCCTGAAACTCAGGCGAAGATT TTCTAGTATTGGTGGTGAACACACCAAGTGTTTATGTTTGTCCGGGCGGT GCAATTGGGATGTATCTTAGACGCCGACTACATGATTTCAACAAAGAAGC GAGAATTGCAAGGTAGCCTGATTGAGTACAGCACGTGATCAGCCCCGTAG TAGCACAGCTGAGCTATGCAAGTTGTAGCTCGCAGTTCTGCCTATTGAAA GTCAGTAAGTGAGACATTTGAAACGATGTGATTACTGTGTATATAAATGT TTTTTGGGTTATTTTTTCGATTACCTTATTTCAAAAATCCTTTTTTTGTC TTTGTTTTTTTTCCCCCGAGTTCGCTGAAATCGTTCCATTTGCGGTTACT GTCAGCGCAGCATTTTGTCAGGTCCGTTTTCTGTGGTGGATTGCTGTTTT CGCGCCTCGTTTATGTTTTCTCAGCTGTATATGCATTGCCTTGCCTTGGC TACGTGTTTGGGCGTTCGTTTCGGGTTTCTCACTTCGAGTGTTTTGCGTG TCAGTCCAGCGCATTTGACTACATGGTTGCTCAATGCAAAGCGTGCACAG GCCGCTTTTCCTCGCACGGGAGCACCGGTACACAGAACAATAACAGTGAA AGCTTATCATGAACGCATTCCTGAAATTGTGATCGTCTTTCGGCCACTGT GATCGGAGCATTGTCTCTAAGTCTGCTTTCTGTTTTGCACCGTTTTTTTC GCTCTCGTTTCTATTTCTCCGTTTTCTGCCTTTTTGCGTGATTGCTCGGT GGTTTTCCTGGCACTGATGAGAGCACCAATCAAAGCAAATCTAAACATCG AAAACCTATCGAAAGCACATGCCATTTCGGCGGCTAAATTGTTGGGCCTT GGTTTTCACTCTTTTAGCGTTGCCGCGTCAGCGTCACATAGGTTGTATCT ACTACCAGTGTCATCATTTTATTTGTTTTTTTCCCCATGAATGACGTCAT ATGTAATTCGTATGTGTTTTTTGTCTTCTGTACGACAGCCGGTGGATATG TGGAGCATTGGAGTCATTATCTACACGCTTTTGGGCGGGTACCCTCCCTT CCACGATGAGAACCAGACGCGATTGTTCCGGCGGATAAAGGCGGGGAGTT TCAAGTTTCACGACGAGTACTGGAGTAATACGTCCGATCACGCTAAGGTA CCTACTAGTGTATATATATATATATCTATATGTATATATATAGATATATA TAGATATATGTATATGGAGAGAGAGAGAGATACTTCTTCCTCTATTCCAT AAGTAGAGGGGGCAAACGTGATAGAAGATGAACGCTATTTTTTATTCAAG AAAGGTTCGCAGATTTGGAGCCCTTAGGATATTATGTAAGGGCTAGAAGT GTAGTTAGTTCAACCAACTGTGGCAAGCGGGTTGACTTGGAAACAAAAAT CCCGGTGAGTGAAAGATGTGGGGTATGTTAAGGGTGGGCGTCTTTTTTTC TTATGACCACTCTTTCATTGTTACGTACACTCCCTCCTCCCCTCCCCTCG CCCTCCCGATCCCAATTAAAAATTAAAAAAAAACTCTAACAGGATCTTAT CCGTAAACTTCTGTTGGTGGACGAGAGGAGAAGGATGACGGCGCGGGATG CAGTGCACCACCCGTGGCTGCTGACCACGGGACAGTCCCTGGCAAGTCAT AATCTCGGGAAAAATCTAGAGCAGCTGCGAATCTTCAACGCCACTAGGAA GCTGCGAGGCGCGATCAGATCGGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig22705:947..3220+

>mRNA_H-paniculata_contig22705.6047.1 ID=mRNA_H-paniculata_contig22705.6047.1|Name=mRNA_H-paniculata_contig22705.6047.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig22705:947..3220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCAGTGTTCTTGGTGGAAACGTTTCGGACCAGTGTGGCTCGCCTGGATA
TGTGGCGCCGGAGATCTTGAGGGGAGCTCCGTACGGCACGTGCAGTGTTC
TTGGTGGAAACGTTTCGGACCAGTGTGGCTCGCCTGGATATGTGGCGCCG
GAGATCTTGAGGGGAGCTCCGTACGGCACGCCGGTGGATATGTGGAGCAT
TGGAGTCATTATCTACACGCTTTTGGGCGGGTACCCTCCCTTCCACGATG
AGAACCAGACGCGATTGTTCCGGCGGATAAAGGCGGGGAGTTTCAAGTTT
CACGACGAGTACTGGAGTAATACGTCCGATCACGCTAAGCCGGTGGATAT
GTGGAGCATTGGAGTCATTATCTACACGCTTTTGGGCGGGTACCCTCCCT
TCCACGATGAGAACCAGACGCGATTGTTCCGGCGGATAAAGGCGGGGAGT
TTCAAGTTTCACGACGAGTACTGGAGTAATACGTCCGATCACGCTAAGGA
TCTTATCCGTAAACTTCTGTTGGTGGACGAGAGGAGAAGGATGACGGCGC
GGGATGCAGTGCACCACCCGTGGCTGCTGACCACGGGACAGTCCCTGGCA
AGTCATAATCTCGGGAAAAATCTAGAGCAGCTGCGAATCTTCAACGCCAC
TAGGAAGCTGCGAGGCGCGATCAGATCGGATCTTATCCGTAAACTTCTGT
TGGTGGACGAGAGGAGAAGGATGACGGCGCGGGATGCAGTGCACCACCCG
TGGCTGCTGACCACGGGACAGTCCCTGGCAAGTCATAATCTCGGGAAAAA
TCTAGAGCAGCTGCGAATCTTCAACGCCACTAGGAAGCTGCGAGGCGCGA
TCAGATCG
back to top