mRNA_H-paniculata_contig2268.6035.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2268.6035.1
Unique NamemRNA_H-paniculata_contig2268.6035.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2268.6035.1 vs. uniprot
Match: A0A6H5KVP7_9PHAE (Dynamin_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVP7_9PHAE)

HSP 1 Score: 725 bits (1872), Expect = 8.300e-255
Identity = 369/514 (71.79%), Postives = 424/514 (82.49%), Query Frame = 2
Query:  185 SWRLTAAKPCCRGLSSLDGKVQAEIMDRCNELHASFIQPLNDNVNGPLEKLNTGGYQSTKMPFVFVLGNHSSGKSSFINYVLGRNIQTAGVAPTDDSFTIIAPGSADIDQDGPAIVGDPDMGFLGLRQFGPTLVHHTELKIRSGTSTNSFMMVDSPGMIDSPVSRTGFSAYDNGPSSSGRPEEMGRRGS--DSTRGYDFEGVVRWFAERADVILLFFDPDKPGTTGETLSILTNSLPGMDHKLYIVLNKADQFEKIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPVKDRGQGVDLTGDGNNTSPALSSGLQDLQKTRDDVKAEVMKAPKRRIDNVITRLTDSVHLLQVHTRVLDEMQGDMRRARMWRYGTTLASLSAGIGLSGCSVFLSAPQELTAGVVGLSVVGAGGIQFFNMKALKAKEENMTSMEGLNTHFRRGYARELAEGDESITSAWIRVREGLHATLSSLGLDGVGKVKSGERKELRRILDVEIPALRRRAAPVQFSFFGTSSK 1720
            SW    ++   R  S++D KVQAEI+++C++LHASFIQPLND   GPLEKL TGGYQSTKMPFVFVLGNHSSGKSSFINYVLGRNIQTAGVAPTDDSFTIIAPG +D+DQDGPA+VGDPDMGF GLRQFGPTL HHTELK+RSG STNSFMMVDSPGMIDSP+SR+ +   D        P+    RG   D++RGYDFEGVVRWFAERADVILLFFDPDKPGTTGETLSILTNSL G DHKLY+VLNKADQF+KIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPVK R  G    G+G     +LSSGL DL+ TRDDV AEVMKAPKRRIDN+ITRLTDSVHLLQVHT VLD +Q D R A++ R+GTT A L+AG GL G SVFL AP E+  G  GL++  AGG+QF N KALKA  E M S+EGLN +F + Y RE++EGDESIT++W R+R GLH TL+SLG+DGV +VK+ E++EL++ILD +IP+LRR+AAPV+FSFFGT S+
Sbjct:   31 SWETDGSRHQRRRQSTVDSKVQAEILEKCDDLHASFIQPLNDKTAGPLEKLQTGGYQSTKMPFVFVLGNHSSGKSSFINYVLGRNIQTAGVAPTDDSFTIIAPGPSDLDQDGPALVGDPDMGFSGLRQFGPTLTHHTELKVRSGISTNSFMMVDSPGMIDSPMSRSIYERSD--------PDSPAGRGKGVDTSRGYDFEGVVRWFAERADVILLFFDPDKPGTTGETLSILTNSLAGKDHKLYVVLNKADQFKKIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPVKSRDGGA---GEGE-VELSLSSGLHDLEATRDDVAAEVMKAPKRRIDNIITRLTDSVHLLQVHTTVLDALQKDFRNAKLVRHGTTFAVLAAGGGLFGGSVFLGAPIEMAVGAAGLALASAGGLQFHNSKALKATHEEMISVEGLNHYFGKIYTREVSEGDESITASWRRIRHGLHLTLASLGIDGVSRVKASEQRELQKILDTDIPSLRRQAAPVRFSFFGTKSR 532          
BLAST of mRNA_H-paniculata_contig2268.6035.1 vs. uniprot
Match: A0A836CHQ6_9STRA (Dynamin_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ6_9STRA)

HSP 1 Score: 626 bits (1614), Expect = 1.240e-215
Identity = 327/527 (62.05%), Postives = 395/527 (74.95%), Query Frame = 2
Query:  167 ITNGTPSWRLTAAKPCCR-GLSSLDGKVQAEIMDRCNELHASFIQPLNDNVNGPLEKLNTGGYQSTKMPFVFVLGNHSSGKSSFINYVLGRNIQTAGVAPTDDSFTIIAPGSADIDQDGPAIVGDPDMGFLGLRQFGPTLVHHTELKIRSGTSTNSFMMVDSPGMIDSPVSRTGFSAYDNGPSSSGRPEEMGRRGSDSTRGYDFEGVVRWFAERADVILLFFDPDKPGTTGETLSILTNSLPGMDHKLYIVLNKADQFEKIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPVKDRGQ---------GVDLTGDGNNTSPALSSGLQDLQKTRDDVKAEVMKAPKRRIDNVITRLTDSVHLLQVHTRVLDEMQGDMRRARMWRYGTTLASLSAGIGLSGCSVFLSAPQELTAGVVGLSVVGAGGIQFFNMKALKAKEENMTSMEGLNTHFRRGYARELAEGDESITSAWIRVREGLHATLSSLGLDGVGKVKSGERKELRRILDVEIPALRRRAAPVQFSFFGTSS 1717
            I  G PS R+       R   ++LD  +QAEIM +C +L + FIQPLND + GPL+K ++GGY++TK+PFVFVLGNHSSGKSSFIN+ +GR IQT GVAPTDDSFTIIAPG  DIDQDGPA++GDPDMGF GLRQFGP L+HHT LK+R   +T++FMMVDSPGMIDSPV+R   SA+D+G  +  R        S S RGYDFE VV+WFA+RADVILLFFDPDKPGTTGETLSILTNSLPG+DHKLYIVLNKAD+FE+IHDFARA+GSLCWNLSKVI RKDLPRIYTMCLP  DR Q              G     S  L SGLQDL+ TR  V +EV KAPKRRIDN+ITRLTDSVHLLQVH  +++++Q D RRA+  + GTTLA + AG G +G S++LSAP EL A V  L+V+ AGG+ F   + L+ KEE+M S+EGLN  F + YA ELAEGDE I S W R+RE L  TL + GL+ +  VK+ + K+L+RILD +IP+LRR AAPVQF++ G  +
Sbjct:    2 IAQGVPSLRINPRVLSTRDSAATLDTSLQAEIMSKCEDLSSKFIQPLNDRLRGPLDKSSSGGYRTTKLPFVFVLGNHSSGKSSFINHCIGRTIQTTGVAPTDDSFTIIAPGPKDIDQDGPALIGDPDMGFSGLRQFGPALIHHTCLKVRRDIATSTFMMVDSPGMIDSPVTRA--SAFDSGGGAHNR--------SLSDRGYDFEAVVKWFADRADVILLFFDPDKPGTTGETLSILTNSLPGLDHKLYIVLNKADKFERIHDFARAFGSLCWNLSKVIQRKDLPRIYTMCLPEADRQQQXXXXXXXXXXXXXGGDAGESSRLGSGLQDLESTRVTVLSEVFKAPKRRIDNIITRLTDSVHLLQVHATIVEDLQRDYRRAKWGQRGTTLAVVGAGAGAAGASMYLSAPLELPAAVGVLTVLLAGGVHFMTSRTLRQKEEHMLSVEGLNMRFSKCYATELAEGDEMINSVWKRIRESLKLTLGTSGLNAIPSVKANDLKQLQRILDQDIPSLRRSAAPVQFTYEGAKA 518          
BLAST of mRNA_H-paniculata_contig2268.6035.1 vs. uniprot
Match: A0A7S2EBB6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EBB6_9STRA)

HSP 1 Score: 541 bits (1394), Expect = 7.750e-182
Identity = 286/493 (58.01%), Postives = 354/493 (71.81%), Query Frame = 2
Query:  236 DGKVQAEIMDRCNELHASFIQPLNDNVNGPLEKLNTGGYQSTKMPFVFVLGNHSSGKSSFINYVLGRNIQTAGVAPTDDSFTIIAPGSADIDQDGPAIVGDPDMGFLGLRQFGPTLVHHTELKIRSGTSTNSFMMVDSPGMIDSPVSRTGFSAYDNGPSSSGRPEEMGRRGSDSTRGYDFEGVVRWFAERADVILLFFDPDKPGTTGETLSILTNSLPGMDHKLYIVLNKADQFEKIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPVKDRG-QGVDLTGDGNNTSPALSSGLQDLQKTRDDVKAEVMKAPKRRIDNVITRLTDSVHLLQVHTRVLDEMQGDMRRARM-W----RYGTTLASLSAGIGLSGCSVFLSAPQELTAGVVGLSVVGAGGIQFFNMKALKAKEENMTSMEGLNTHFRRGYARELAEGDESITSAWIRVREGLHATLSSLGLDGVGKVKSGERKELRRILDVEIPALRRRAAPVQF 1696
            +GK+Q EI+D+C+ELH+S + P+N+ + GPL K +  G   T +PFV ++GNHSSGKSSF+NYVLGR +QTAGVAPTDD FT+IAPG +D+DQDGPA+VGDPDMGF  LRQFGPTL+HHT+LK+RS    N+FM+VDSPGMIDSPVS  G S Y  G              +   RGYDF+GVV+WFAERADV+LLFFDPDKPGTTGETLSIL +SL GMDHKL IVLNKADQF KIHDFARAYGSLCWNLSKVIPRKDLPRI+TMCLP         D TG      P + SGL DL +TRDDV AEVMKAPKRRIDNVIT L DSVHLL +H R++++ +   R +RM W    + G TLA+   G  L+   ++ S P E T GVV  +V+G GG+ ++N   LKA E+N+ + E L   F+R ++RE++E DE  +S W R+R+ L  +L ++GLD    V S +   L +ILD +IP LRR A+P  F
Sbjct:  106 EGKIQREILDKCSELHSSLM-PMNEKLRGPLAKHSDRG---TSLPFVLLVGNHSSGKSSFVNYVLGRKVQTAGVAPTDDCFTVIAPGPSDVDQDGPALVGDPDMGFANLRQFGPTLIHHTQLKVRSDIQNNNFMLVDSPGMIDSPVSAGGMSQYGGG--------------AIMDRGYDFQGVVKWFAERADVVLLFFDPDKPGTTGETLSILLHSLGGMDHKLMIVLNKADQFRKIHDFARAYGSLCWNLSKVIPRKDLPRIFTMCLPASSTTTSSTDETGA--TVPPPIGSGLADLHQTRDDVVAEVMKAPKRRIDNVITHLNDSVHLLLMHARIVEDTRS--RYSRMVWENRVQEGGTLAT---GASLTALGMYFSLPVEFTGGVVAATVLGVGGMHWYNSSKLKAHEDNLLTPEELGASFQRTHSREVSEADEFTSSVWQRIRDPLMVSLRTVGLDNTPTVGSKDIYALNQILDEDIPRLRRLASPTHF 573          
BLAST of mRNA_H-paniculata_contig2268.6035.1 vs. uniprot
Match: A0A7S3V588_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V588_9STRA)

HSP 1 Score: 538 bits (1387), Expect = 2.260e-181
Identity = 279/489 (57.06%), Postives = 346/489 (70.76%), Query Frame = 2
Query:  230 SLDGKVQAEIMDRCNELHASFIQPLNDNVNGPLEKLNTGGYQSTKMPFVFVLGNHSSGKSSFINYVLGRNIQTAGVAPTDDSFTIIAPGSADIDQDGPAIVGDPDMGFLGLRQFGPTLVHHTELKIRSGTSTNSFMMVDSPGMIDSPVSRTGFSAYDNGPSSSGRPEEMGRRGSDSTRGYDFEGVVRWFAERADVILLFFDPDKPGTTGETLSILTNSLPGMDHKLYIVLNKADQFEKIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPVKDRGQGVDLTGDGNNTSPALSSGLQDLQKTRDDVKAEVMKAPKRRIDNVITRLTDSVHLLQVHTRVLDEMQGDMRRARMWRYGTTLASLSAGIGLSGCSVFLSAPQELTAGVVGLSVVGAGGIQFFNMKALKAKEENMTSMEGLNTHFRRGYARELAEGDESITSAWIRVREGLHATLSSLGLDGVGKVKSGERKELRRILDVEIPALRRRAAPVQF 1696
            ++   VQ++I+D C+ LH S I PLN+ + GPL K +    ++T +PFVF++GNHSSGKSSFINYVLGR+IQTAGVAPTDD FT++APG  D DQDGPA++GDPDMGF GLRQFGPTL+HHT+LK+R+ T+T SFMMVDSPGMIDSPVS+ G             P+  G  G    RGYDF+GVVRWF+ERADV+LLFFDPDKPGTTGETL++L +SL GMDHKL IVLNKADQF+KIHDFARAYGSLCWNLSKVIPRKDLPRI+TMCLP K  G           T  ++  GL+DL +TRDDV  EVMKAPKRR+DN++T L DSVHLL +H +V +++Q    +         L S++AGIGLS    +   P E T     L+VVG GG+++FN   L   E  + SME L+  F+R ++RE+++ DE   S W R+R+ L  +L S GL       S E  +LRRILD EIP LRR A+P  F
Sbjct:   77 NISPSVQSQILDECSSLHRS-IMPLNEKIRGPLAKNSD---KNTALPFVFLVGNHSSGKSSFINYVLGRSIQTAGVAPTDDCFTVVAPGPDDTDQDGPALIGDPDMGFSGLRQFGPTLIHHTQLKVRADTNTPSFMMVDSPGMIDSPVSQAGI------------PQGYGS-GQSMDRGYDFQGVVRWFSERADVVLLFFDPDKPGTTGETLNVLLHSLSGMDHKLLIVLNKADQFKKIHDFARAYGSLCWNLSKVIPRKDLPRIFTMCLPNKTDG-----------TDGSIGDGLKDLHQTRDDVLLEVMKAPKRRVDNIVTHLNDSVHLLLMHAQVAEDVQKKYSKIVWNNRVQELGSMTAGIGLSVLGFYAQLPMEFTGSAAALTVVGVGGMKWFNDTKLDEAESQLVSMEELSASFQRTHSREISDADEYTASIWQRIRDNLQLSLKSEGLSSYPSASSSEMDDLRRILDEEIPRLRRLASPNHF 537          
BLAST of mRNA_H-paniculata_contig2268.6035.1 vs. uniprot
Match: A0A7S2UYE7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYE7_9STRA)

HSP 1 Score: 536 bits (1380), Expect = 2.930e-180
Identity = 308/544 (56.62%), Postives = 372/544 (68.38%), Query Frame = 2
Query:  167 ITNGTPSWRLT--AAKPCCRG----LSSLDGK-------------VQAEIMDRCNELHASFIQPLNDNVNGPLEKLNTGGY------QSTKMPFVFVLGNHSSGKSSFINYVLGRNIQTAGVAPTDDSFTIIAPGSADIDQDGPAIVGDPDMGFLGLRQFGPTLVHHTELKIRSGTSTNSFMMVDSPGMIDSPVSRTGFSAYDNGPSSSGRPEEMGRRGSDSTRGYDFEGVVRWFAERADVILLFFDPDKPGTTGETLSILTNSLPGMDHKLYIVLNKADQFEKIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPVKDR-GQG-----VDLTGDGNNTSPALSSGLQDLQKTRDDVKAEVMKAPKRRIDNVITRLTDSVHLLQVHTRVLDEMQGDMRRARMWR--YGTTLASLSAGIGLSGCSVFLSAPQELTA--GVVGLSVVGAGGIQFFNMKALKAKEENMTSMEGLNTHFRRGYARELAEGDESITSAWIRVREGLHATLSSLGLDGVGKVKSGERKELRRILDVEIPALRRRAAPVQ 1693
            +T   P W L   AA   CRG     S++  K              Q  I+ RC ELHA+ +QPLN+   GPL    TGG       ++TK+PFVF+LGNHSSGKSSFINYVL R IQTAGVAPTDDSFTII+PG  DIDQDGPA+VGDPDMGF GLR FGP L+HH +LK+RSG +TNSFMMVDSPGMIDSPVSR   SA+++  +S     +  R+     RGYDFE  VRWFA+RADV+LLFFDPDKPGTTGETLSILTNSL G+DHKLYI+LNKADQF +IHDFARAYGSLCWNLSKVI RKDLPRI+TMCLP +DR   G     +DL    N  S     GLQDL +TR+DV AEV KAPKRRIDNVITRLTDS HLL+VH  VL ++Q    R  +WR     T A+L A  G +  +  L+ P E+ A  G  GL VVG  G   +N + L  +   + + EGLNT F   YA  LAEGDE + + W R+R+ L  +L++ G +GV KV++G+ +EL R+L+ E+P+LRR A+P Q
Sbjct:    5 LTGLVPRWHLLRGAASRICRGNLAGFSTMSDKGSAPKFTIDLSEETQKTILKRCGELHAT-LQPLNEGTRGPL----TGGGGMGLDGRTTKLPFVFLLGNHSSGKSSFINYVLQRKIQTAGVAPTDDSFTIISPGPQDIDQDGPALVGDPDMGFSGLRHFGPALIHHIQLKVRSGVATNSFMMVDSPGMIDSPVSRV--SAFESATASYEGGYDTDRQ-RQFDRGYDFEAAVRWFADRADVVLLFFDPDKPGTTGETLSILTNSLAGLDHKLYIILNKADQFRRIHDFARAYGSLCWNLSKVITRKDLPRIFTMCLPEQDRLADGGPTARLDLDAGANGES----GGLQDLHETRNDVVAEVFKAPKRRIDNVITRLTDSAHLLEVHCTVLQQLQKSRNR-HVWRGRLALTGATLVAA-GAAAAAATLTMPTEVLAATGAAGLMVVG--GTHLYNRRVLADETAQLLTSEGLNTAFEACYAPRLAEGDEFVLAVWKRIRDNLKVSLTTAGFEGVDKVRAGQLQELARVLEEEVPSLRRLASPHQ 532          
BLAST of mRNA_H-paniculata_contig2268.6035.1 vs. uniprot
Match: A0A7S2UGL1_9STRA (Hypothetical protein n=3 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UGL1_9STRA)

HSP 1 Score: 516 bits (1330), Expect = 3.370e-174
Identity = 273/467 (58.46%), Postives = 329/467 (70.45%), Query Frame = 2
Query:  299 PLNDNVNGPLEKLNTGGYQSTKMPFVFVLGNHSSGKSSFINYVLGRNIQTAGVAPTDDSFTIIAPGSADIDQDGPAIVGDPDMGFLGLRQFGPTLVHHTELKIRSGTSTNSFMMVDSPGMIDSPVSRTGFSAYDNGPSSSGRPEEMGRRGSDSTRGYDFEGVVRWFAERADVILLFFDPDKPGTTGETLSILTNSLPGMDHKLYIVLNKADQFEKIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPVKDRGQGVDLTGDGNNTSPALSSGLQDLQKTRDDVKAEVMKAPKRRIDNVITRLTDSVHLLQVHTRVLDEMQGDMRRARMWRYGTT-LASLSAGIGLSGCSVFLSAPQELTAGVVGLSVVGAGGIQFFNMKALKAKEENMTSMEGLNTHFRRGYARELAEGDESITSAWIRVREGLHATLSSLGLDGVGKVKSGERKELRRILDVEIPALRRRAAPVQF 1696
            PLND   GPL K +  G   T +PFVF++GNHSSGKSSF+NYVLGR +QTAGVAPTDDSFT+IAPG  D DQDGPA++GDPDMGF  LRQFGPTL+HHT+LK+RSG +  +FMMVDSPGMIDSPVS  GFS   N                 + RGYDF+GVVRWFAERADV+LLFFDPDKPGTTGETLSIL +SL GMDHKL IVLNKADQFEKIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPVK           G+     +  GL DL +TRDDV AEVMKAPKRRIDNVIT L DSVHLL +H  + ++++    +  +W + T  + +  AG GL+  S++   P E + GV  ++V+GAGG+++ N   L   E  + + E L+  F+R +ARE++E DE   S W R+R  L  +L S+GL  +  V S E  +L  ILD +IP LRR A+P  F
Sbjct:    2 PLNDQWRGPLAKHSDRG---TSLPFVFLVGNHSSGKSSFVNYVLGRKVQTAGVAPTDDSFTVIAPGPEDTDQDGPALIGDPDMGFSNLRQFGPTLIHHTQLKVRSGINNGNFMMVDSPGMIDSPVSSGGFSGQTN----------------TTDRGYDFQGVVRWFAERADVVLLFFDPDKPGTTGETLSILLHSLGGMDHKLLIVLNKADQFEKIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPVKG----------GDTAQKEIMQGLADLHQTRDDVVAEVMKAPKRRIDNVITHLNDSVHLLMMHALISEDVRKRYSKV-VWDHRTQEVGTAVAGGGLAALSLYAGIPTEFSFGVFCVTVLGAGGLRWHNSIQLTEAEAQLLTTEELSASFQRTHAREISEADEFTASVWQRIRGPLQMSLQSIGLANIPSVSSSEWAQLNNILDQDIPKLRRLASPTHF 438          
BLAST of mRNA_H-paniculata_contig2268.6035.1 vs. uniprot
Match: B8BQ51_THAPS (Dynamin_N domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQ51_THAPS)

HSP 1 Score: 519 bits (1336), Expect = 1.040e-172
Identity = 284/487 (58.32%), Postives = 337/487 (69.20%), Query Frame = 2
Query:  257 IMDRCNELHASFIQPLNDNVNGPLEKLNTGGYQSTKMPFVFVLGNHSSGKSSFINYVLGRNIQTAGVAPTDDSFTIIAPGSADIDQDGPAIVGDPDMGFLGLRQFGPTLVHHTELKIRSGTSTNSFMMVDSPGMIDSPVSRTGFS-AYDNGPSSSGRPEEMGRRGSDST--------RGYDFEGVVRWFAERADVILLFFDPDKPGTTGETLSILTNSLPGMDHKLYIVLNKADQFEKIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPVKDRGQGVDLTGDGNNTSPALSS-GLQDLQKTRDDVKAEVMKAPKRRIDNVITRLTDSVHLLQVHTRVLDEMQGDMRRARMWRYGTTLASLSAGIGLSGCSVFLSAPQELTAGVVGLSVVGAGGIQFFNMKALKAKEENMTSMEGLNTHFRRGYARELAEGDESITSAWIRVREGLHATLSSLGLDGVGKVKSGERKELRRILDVEIPALRRRAAP 1687
            I+ +   LH+S I PLN  + GPL K +  G   T +PFVF++GNHSSGKSSFINYVLGR++QTAGVAPTDD FT+IAPG  D+DQDGPA+VGDPD+GF GLRQFGPTL+HH +LK+R G    +FMMVDSPGMIDSPVS  G S  Y            MG  G  S+        RGYDF+GVVRWFAERADV+LLFFDPDKPGTTGETLSIL +SL GMDHKL IVLNKADQF+KIHDFARAYGSLCWNLSKVIPRKDLPRI+TMCLPVK        T   N    AL    L DL +TRDDV AEVMKAPKRRIDNVIT L DSVHLL +H  V ++++    + +        +SL AG+GL+   +  S P + T GVV  +VVG GG+++FN   LK  EE + S+E L+  F+R + RE+ E DE   S W RVR+ L  +L   GL     VK G+ + L+ ILD EIP LRR A+P
Sbjct:  131 IISQVTNLHSS-IMPLNTTLRGPLAKNSDRG---TSLPFVFLVGNHSSGKSSFINYVLGRSVQTAGVAPTDDCFTVIAPGPKDVDQDGPALVGDPDIGFEGLRQFGPTLIHHAQLKVREGIQNQNFMMVDSPGMIDSPVSSGGMSMGY-----------SMGNSGMHSSSTSSAVMDRGYDFQGVVRWFAERADVVLLFFDPDKPGTTGETLSILLHSLGGMDHKLLIVLNKADQFKKIHDFARAYGSLCWNLSKVIPRKDLPRIFTMCLPVKRDDNDASST---NIAQEALDQRALADLHQTRDDVVAEVMKAPKRRIDNVITNLHDSVHLLLMHAVVAEDVRSRYSKRQWENRIQEFSSLVAGVGLAALGLHFSVPPQFTGGVVAATVVGVGGLRWFNSSKLKDAEEQLLSVEELSASFQRTHPREVNEADEFYASVWQRVRDPLKLSLWRTGLSDFPAVKKGDLQHLQMILDEEIPRLRRLASP 599          
BLAST of mRNA_H-paniculata_contig2268.6035.1 vs. uniprot
Match: A0A7S2VHD5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VHD5_9STRA)

HSP 1 Score: 513 bits (1322), Expect = 2.280e-171
Identity = 272/482 (56.43%), Postives = 341/482 (70.75%), Query Frame = 2
Query:  245 VQAEIMDRCNELHASFIQPLNDNVNGPLEKLNTGGYQSTKMPFVFVLGNHSSGKSSFINYVLGRNIQTAGVAPTDDSFTIIAPGSADIDQDGPAIVGDPDMGFLGLRQFGPTLVHHTELKIRSGTSTNSFMMVDSPGMIDSPVSRTGFSAYDNGPSSSGRPEEMGRRGSDSTRGYDFEGVVRWFAERADVILLFFDPDKPGTTGETLSILTNSLPGMDHKLYIVLNKADQFEKIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPVKDRGQGVDLTGDGNNTSPALSS-GLQDLQKTRDDVKAEVMKAPKRRIDNVITRLTDSVHLLQVHTRVLDEMQGDMRRARMWRYGTTLASLSAGIGLSGCSVFLSAPQELTAGVVGLSVVGAGGIQFFNMKALKAKEENMTSMEGLNTHFRRGYARELAEGDESITSAWIRVREGLHATLSSLGLDGVGKVKSGERKELRRILDVEIPALRRRAAP 1687
            VQ  I+++C+ELH+S I P N ++ GPL K +  G   T +PFVF++GNHSSGKSSFINYVLGR++QTAGVAPTDD FT+IAPG  D+DQDGPA+VGDPD+GF GLRQFGPTL+HHT+LK+R G     FM++DSPGMIDSPV+  G  + ++   SS     M        RGYDF+GVVRW AERADV+LLFFDPDKPGTTGETL+IL +SL GMDHKL IVLNKADQF+KIHDFARAYGSLCWNLSKVIPRKDLPRI+TMCLPV     G   +     T+ AL    L DL ++RDDV AEVMKAPKRRIDNVIT L DSVHLL +H  V ++++    + +       ++SL  G+GLS   +    P + T GVV  +V+G GG+ +FN   LK  EE +TS+E L+  F+R + +E++E DE  ++ W R+R+ L  +L   GL     V   +  +L+ ILD EIP LRR A+P
Sbjct:   80 VQQSILNQCSELHSS-IMPFNTSLQGPLAKNSDKG---TSLPFVFLVGNHSSGKSSFINYVLGRSVQTAGVAPTDDCFTVIAPGPKDVDQDGPALVGDPDIGFEGLRQFGPTLIHHTQLKVRDGIRNQDFMIIDSPGMIDSPVNYGGMVSNNSKDRSSTSSAIM-------DRGYDFQGVVRWMAERADVVLLFFDPDKPGTTGETLNILLHSLGGMDHKLLIVLNKADQFKKIHDFARAYGSLCWNLSKVIPRKDLPRIFTMCLPVASTTDGEAKSA---TTTEALDRHALADLHQSRDDVLAEVMKAPKRRIDNVITNLHDSVHLLLMHAVVAEDVRARYSKRQWENRMQEVSSLVLGVGLSALGIHFDVPLQFTGGVVAATVIGVGGMHWFNSSKLKDAEEQLTSIEELSASFQRTHPQEVSEADEFYSAIWARIRDPLRLSLWRTGLSDFPAVSKSDVAKLQNILDQEIPRLRRLASP 547          
BLAST of mRNA_H-paniculata_contig2268.6035.1 vs. uniprot
Match: A0A4D9CUF5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUF5_9STRA)

HSP 1 Score: 513 bits (1320), Expect = 3.900e-170
Identity = 283/519 (54.53%), Postives = 350/519 (67.44%), Query Frame = 2
Query:  209 PCCRGLSSLDGKV----------QAEIMDRCNELHASFIQPLNDNVNGPLEKLNTGGYQSTKMPFVFVLGNHSSGKSSFINYVLGRNIQTAGVAPTDDSFTIIAPGSADIDQDGPAIVGDPDMGFLGLRQFGPTLVHHTELKIRSGTSTNSFMMVDSPGMIDSPVSRTGFSAYDNGPSSSGRPEEMGRRGSDSTRGYDFEGVVRWFAERADVILLFFDPDKPGTTGETLSILTNSLPGMDHKLYIVLNKADQFEKIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPVKDRGQGVD-------LTGDGNNTSPALSSGLQDLQKTRDDVKAEVMKAPKRRIDNVITRLTDSVHLLQVHTRVLDEMQGDMRRARMWRYGTTLASLS-AGIGLSGCSVFLSAPQELTAGVVGLSVVGAGGIQFFNMKALKAKEENMTSMEGLNTHFRRGYARELAEGDESITSAWIRVREGLHATLSSLGLDGVGK---VKSGERKELRRILDVEIPALRRRAAPVQFSF 1702
            P  R LS+ DG            Q  ++ RC+EL  S++QP+ND + GPLEK +    ++  +PFVF+LGNHSSGKSSF+NYV  R IQTAGVAPTDDSFTIIAPG ADIDQDGP+ +GDPDMGF GLR FGP L+HHT+LKIR+G +T  FM+VDSPGMIDSP +     +  +  S+S + +      +   RGYDF+GV +WFA+RADVILLFFDPDKPGTTGETLSILT SL GMDHKLYIVLNKADQF KIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLP   + Q          L G+     P+L  GL DL+++R++V  EV+KAPKRRIDNVITRL DSVHL+Q+H  VL+ ++ D  R  +WR+    ASL  AG+G  G  ++L    +       L  +GAGG  + N K LK     + S EGL   F R YAR + EGDE + S W R    L   L++     +GK   V   E +E++ IL+ ++PALRR AAPV ++F
Sbjct:   35 PLERSLSTDDGNTTHSGTIKLDSQRRVLQRCDELQ-SYLQPINDRLRGPLEKCSD---KAPLLPFVFLLGNHSSGKSSFVNYVCNRPIQTAGVAPTDDSFTIIAPGPADIDQDGPSTIGDPDMGFAGLRHFGPDLIHHTQLKIRAGLATTEFMLVDSPGMIDSPHASASQPSPSSLISASYKEDNTRSARNHLDRGYDFQGVCKWFADRADVILLFFDPDKPGTTGETLSILTQSLAGMDHKLYIVLNKADQFRKIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPAAYQRQQTSHSSRPAALGGELEIEGPSLGLGLADLERSREEVVGEVLKAPKRRIDNVITRLADSVHLVQMHALVLEALRNDFAR-ELWRFRAGAASLCLAGVGAVGGGMYLGVALQTILAFSVLYALGAGGFVYANEKMLKEHAAVLASPEGLRLIFERLYARPVMEGDEFVNSLWKRTFPSLQIMLNTQVGQDLGKLPKVSKAELQEIQCILEEDVPALRRLAAPVSWTF 548          
BLAST of mRNA_H-paniculata_contig2268.6035.1 vs. uniprot
Match: A0A7S1BVP1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BVP1_9STRA)

HSP 1 Score: 506 bits (1302), Expect = 1.550e-168
Identity = 285/502 (56.77%), Postives = 343/502 (68.33%), Query Frame = 2
Query:  233 LDGKVQAEIMDRCNELHASFIQPLNDNVNGPLEKLNTGGYQSTKMPFVFVLGNHSSGKSSFINYVLGRNIQTAGVAPTDDSFTIIAPGSADIDQDGPAIVGDPDMGFLGLRQFGPTLVHHTELKIRSGTSTNSFMMVDSPGMIDSPVSRTGFSAYDNGPSSSGRPEEMGRRGSDST----RGYDFEGVVRWFAERADVILLFFDPDKPGTTGETLSILTNSLPGMDHKLYIVLNKADQFEKIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPVKDRGQGVDLTGDGNNTSPA------LSSGLQDLQKTRDDVKAEVMKAPKRRIDNVITRLTDSVHLLQVHTRVLDEMQGDMRRARMWR----YGTTLASLSAGIGLSGCSVFLSAPQELTAGVVGLSVVGAGGIQFFNMKALKAKEENMTSMEGLNTHFRRGYARELAEGDESITSAWIRVREGLHATLSSLGLDGVGKVKSGERKELRRILDVEIPALRRRAAPVQF 1696
            +D  VQ E++  C++LHA  + PLN+ + GPLEK      QST +PFV ++GNHSSGKS+FIN+VLGR +QT+GVAPTDD FTIIAPG  DIDQDG A +GDPDMGF  LRQFGP L+HHT+LKIRS   T SFMMVDSPGMIDSP S  G                M RR  D      RGYDFEGVVRW++ERADVILLFFDPDKPGTTGETLSIL ++L GMDHKL IVLNKADQF +IHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPV D   G D T   ++ SP       L  GL DL+  R +V AEVMKAPKRRIDN ITRL DSV+LL++H  + ++++    R  +W     + T L S SA    S  S +L    ++TA V   S+  A    ++N + L+  E ++ S +GL+  FRR YAR++AEGDE   S W RVR  L   LS++GL  V  VK+GE ++L RIL+ EIP LRR A+P  F
Sbjct:   62 VDPAVQTEVLRACSDLHAGVL-PLNEKIRGPLEK---SASQSTALPFVLLVGNHSSGKSTFINHVLGRTVQTSGVAPTDDCFTIIAPGPQDIDQDGHAALGDPDMGFGSLRQFGPALIHHTQLKIRSDVKTRSFMMVDSPGMIDSPASHEGM---------------MLRRSKDDRALMDRGYDFEGVVRWYSERADVILLFFDPDKPGTTGETLSILVHALGGMDHKLLIVLNKADQFRRIHDFARAYGSLCWNLSKVIPRKDLPRIYTMCLPVSD---GPDET-PSDDPSPEEDGDLPLGQGLADLRMARREVVAEVMKAPKRRIDNAITRLGDSVNLLRMHAVLTEDLRSRYVR-EVWSSRLYFSTVLVSGSAA---SAGSFYLGQDLKVTAAVASASLAVAALTGWYNSQLLRRAEADLASPDGLSASFRRSYARQIAEGDEFTASLWERVRGSLELNLSAVGLANVPAVKAGEVEDLDRILEEEIPRLRRLASPSHF 536          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2268.6035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVP7_9PHAE8.300e-25571.79Dynamin_N domain-containing protein n=2 Tax=Ectoca... [more]
A0A836CHQ6_9STRA1.240e-21562.05Dynamin_N domain-containing protein n=1 Tax=Tribon... [more]
A0A7S2EBB6_9STRA7.750e-18258.01Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S3V588_9STRA2.260e-18157.06Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S2UYE7_9STRA2.930e-18056.62Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2UGL1_9STRA3.370e-17458.46Hypothetical protein n=3 Tax=Attheya septentrional... [more]
B8BQ51_THAPS1.040e-17258.32Dynamin_N domain-containing protein n=1 Tax=Thalas... [more]
A0A7S2VHD5_9STRA2.280e-17156.43Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A4D9CUF5_9STRA3.900e-17054.53Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1BVP1_9STRA1.550e-16856.77Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2268contigH-paniculata_contig2268:9430..14250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score745.7
Seed ortholog evalue1.5e-212
Seed eggNOG ortholog2880.D7FV67
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.endocytic recycling
EggNOG OGsKOG1954@1,KOG1954@2759
Ec32 ortholog descriptionRME1L4, RME1-like GTPase/ATPase without a C-terminal EH domain
Ec32 orthologEc-12_007360.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons10
Model size2317
Cds size1629
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2268.6035.1prot_H-paniculata_contig2268.6035.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2268 10021..14153 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929629.9126132-UTR-H-paniculata_contig2268:9429..100201622929629.9126132-UTR-H-paniculata_contig2268:9429..10020Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2268 9430..10020 -
1691480942.844438-UTR-H-paniculata_contig2268:9429..100201691480942.844438-UTR-H-paniculata_contig2268:9429..10020Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2268 9430..10020 -
1622929630.0730877-UTR-H-paniculata_contig2268:14153..142501622929630.0730877-UTR-H-paniculata_contig2268:14153..14250Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2268 14154..14250 -
1691480942.9763174-UTR-H-paniculata_contig2268:14153..142501691480942.9763174-UTR-H-paniculata_contig2268:14153..14250Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2268 14154..14250 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929629.9261982-CDS-H-paniculata_contig2268:10020..102521622929629.9261982-CDS-H-paniculata_contig2268:10020..10252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 10021..10252 -
1691480942.8607886-CDS-H-paniculata_contig2268:10020..102521691480942.8607886-CDS-H-paniculata_contig2268:10020..10252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 10021..10252 -
1622929629.9436386-CDS-H-paniculata_contig2268:10411..104881622929629.9436386-CDS-H-paniculata_contig2268:10411..10488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 10412..10488 -
1691480942.877527-CDS-H-paniculata_contig2268:10411..104881691480942.877527-CDS-H-paniculata_contig2268:10411..10488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 10412..10488 -
1622929629.9593155-CDS-H-paniculata_contig2268:10613..107901622929629.9593155-CDS-H-paniculata_contig2268:10613..10790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 10614..10790 -
1691480942.8873954-CDS-H-paniculata_contig2268:10613..107901691480942.8873954-CDS-H-paniculata_contig2268:10613..10790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 10614..10790 -
1622929629.9731493-CDS-H-paniculata_contig2268:11375..114861622929629.9731493-CDS-H-paniculata_contig2268:11375..11486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 11376..11486 -
1691480942.907591-CDS-H-paniculata_contig2268:11375..114861691480942.907591-CDS-H-paniculata_contig2268:11375..11486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 11376..11486 -
1622929629.9842622-CDS-H-paniculata_contig2268:11736..118711622929629.9842622-CDS-H-paniculata_contig2268:11736..11871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 11737..11871 -
1691480942.9223301-CDS-H-paniculata_contig2268:11736..118711691480942.9223301-CDS-H-paniculata_contig2268:11736..11871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 11737..11871 -
1622929630.0007563-CDS-H-paniculata_contig2268:12043..121121622929630.0007563-CDS-H-paniculata_contig2268:12043..12112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 12044..12112 -
1691480942.9324791-CDS-H-paniculata_contig2268:12043..121121691480942.9324791-CDS-H-paniculata_contig2268:12043..12112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 12044..12112 -
1622929630.014404-CDS-H-paniculata_contig2268:12340..126611622929630.014404-CDS-H-paniculata_contig2268:12340..12661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 12341..12661 -
1691480942.940997-CDS-H-paniculata_contig2268:12340..126611691480942.940997-CDS-H-paniculata_contig2268:12340..12661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 12341..12661 -
1622929630.0269294-CDS-H-paniculata_contig2268:12879..130091622929630.0269294-CDS-H-paniculata_contig2268:12879..13009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 12880..13009 -
1691480942.9495049-CDS-H-paniculata_contig2268:12879..130091691480942.9495049-CDS-H-paniculata_contig2268:12879..13009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 12880..13009 -
1622929630.0441308-CDS-H-paniculata_contig2268:13419..137171622929630.0441308-CDS-H-paniculata_contig2268:13419..13717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 13420..13717 -
1691480942.9580336-CDS-H-paniculata_contig2268:13419..137171691480942.9580336-CDS-H-paniculata_contig2268:13419..13717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 13420..13717 -
1622929630.0584784-CDS-H-paniculata_contig2268:14074..141531622929630.0584784-CDS-H-paniculata_contig2268:14074..14153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 14075..14153 -
1691480942.9670334-CDS-H-paniculata_contig2268:14074..141531691480942.9670334-CDS-H-paniculata_contig2268:14074..14153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2268 14075..14153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2268.6035.1

>prot_H-paniculata_contig2268.6035.1 ID=prot_H-paniculata_contig2268.6035.1|Name=mRNA_H-paniculata_contig2268.6035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=543bp
MSSALHLCARRVTTSSSPIARWTITNGTPSWRLTAAKPCCRGLSSLDGKV
QAEIMDRCNELHASFIQPLNDNVNGPLEKLNTGGYQSTKMPFVFVLGNHS
SGKSSFINYVLGRNIQTAGVAPTDDSFTIIAPGSADIDQDGPAIVGDPDM
GFLGLRQFGPTLVHHTELKIRSGTSTNSFMMVDSPGMIDSPVSRTGFSAY
DNGPSSSGRPEEMGRRGSDSTRGYDFEGVVRWFAERADVILLFFDPDKPG
TTGETLSILTNSLPGMDHKLYIVLNKADQFEKIHDFARAYGSLCWNLSKV
IPRKDLPRIYTMCLPVKDRGQGVDLTGDGNNTSPALSSGLQDLQKTRDDV
KAEVMKAPKRRIDNVITRLTDSVHLLQVHTRVLDEMQGDMRRARMWRYGT
TLASLSAGIGLSGCSVFLSAPQELTAGVVGLSVVGAGGIQFFNMKALKAK
EENMTSMEGLNTHFRRGYARELAEGDESITSAWIRVREGLHATLSSLGLD
GVGKVKSGERKELRRILDVEIPALRRRAAPVQFSFFGTSSKK*
back to top

mRNA from alignment at H-paniculata_contig2268:9430..14250-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2268.6035.1 ID=mRNA_H-paniculata_contig2268.6035.1|Name=mRNA_H-paniculata_contig2268.6035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4821bp|location=Sequence derived from alignment at H-paniculata_contig2268:9430..14250- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTAGGGGTCAGCCACCTCCAACCTGAGGGAGAGGGGAGGGCTTGCCA CACAGCAACAGTCACCTTACAATCTCCGGTTTTCCGTCGTGCAACAGATG TCGTCTGCACTGCACTTGTGTGCAAGGCGAGTGACCACTTCTTCATCGCC TATCGCACGGTGGACAATCACCAACGGTAAGTGCCGTACAGTCCGAACGT ATCGATGAAAACGTGCTTGTTCCAATGTCTGTTGAGGTATTGATGTCGAA ACTGGTTGACAGCCTAGCCACTAATAAGGTTTGATCCCTCGGGAGCAGGA AGGTTAGTGGCGAGTATTGGCCATCCCTACAGTCGAACGATATGTATTAT GTCGTAGGTTATGCACATGCGAGCCCCCTGATATGGTCTTGTCGAAATGC ACATCCCATGTTATGGGAAACGACACCATCTTGCTCGTGATATTTGTGTT GCATGCAAAAATCAGTTGTGCGCGCTCTCTTTGGTTTTTTGACACGACTC ATTGGTTGTCTGCCGTTGTACTTGACCGAACAGGTACCCCATCATGGCGA CTGACGGCAGCTAAGCCTTGTTGCAGGGGCTTATCATCGCTGGACGGGAA GGTTCAGGCCGAGATTATGGACCGTTGCAATGAATTACATGCAAGCTTTA TTCAGCCCCTGAACGACAACGTGAACGGGCCATTGGAGAAATTGAACACC GGCGGCTACCAATCTACGAAGATGCCCTTTGTTTTCGTGCTGGGCAACCA CAGTTCTGGGAAGTCTAGCTTTATAAACTACGTGCTGGGAAGAAACATTC AGACCGCAGGAGTTGCGCCAACCGATGACAGGTGAGAGTGAGATTGTGTG TAGTATCTGGACACACGAAGCAGTCCTCAATAGCGAGTTACTACACCCAC CAGTTGTGCTGGGAGGCAAAAAAACTTCTTGTTTCTGAGGCGGGCATGTG TACCTCATTTGTTTCATCCACTATGGAGTGTGCCGTATGGGTAGTGTGCC GTATTGGTTTGATGAACGAGTGTTTAACAGAACCGTCAGCAGGCTCCCAT ACGATGGTAATCTTTATTGTGCTACGGTTATAATTTTATGTCGATTGCGA TATCTCCCAATCAGTTTTGCTTATCTCGTCGTTGTTGTTTTTGCCTCCTC CCGATCTGTTCTAAGGCATTTGCCTGAAACGCCTTCGTTTACTCTGCGTC CGTGTGGCCTTCTGGTCAAATGCAATTCGGTACATGGGCAGCTTCACCAT CATTGCACCAGGGTCAGCCGATATTGACCAAGATGGACCTGCCATTGTCG GGGATCCGGATATGGGGTTTTTGGGGCTGCGACAGTTCGGCCCAACTCTA GTGCACCACACAGAGCTGAAGGTATCGTATGGGCTTCATGTGTTTGCACA TACCACCAGTAGACATTGTGTCGTCGGCCGTTGTACATGGATCTTATCTG GAGGAAAGTCGTCCCCGTATTTCAAATGTACTCATTGCTCTGCAGCGTAC GGTGTCTGCTGTTTTAGTGATTCAACATATTTTGCACCTTTCACGTCAGC TGGCGTTCCCATTATTTTATTGCACAAAACTGTTTCAAGATACGATCTGG TACAAGCACGAATTCATTCATGATGGTGGATAGCCCGGGTATGATCGACA GCCCCGTATCCCGGACGGGTTTTTCTGCTTACGACAACGGCCCTTCTAGC TCTGGCCGACCAGAGGAAATGGGCCGTCGGGGTTCAGACTCCACTCGAGG CTATGATTTTGAAGGTGTGGTGAGGTGGTTCGCCGAGAGAGCGGACGTGA TTCTGCTGTTCTTCGATCCGGACAAGCCAGGCACAACGGGGGAGACTTTG TCCATCTTGACTAACTCCCTACCTGGCATGGACCATAAGTTGTACATAGT GCTCAACAAGGTGTGTGAAGAGGATTGATGACATAATATGTCAATTGTAG TTTTATGACCATATTACGCCTTCCTTCAATACGGAAAGGGTAACGGTAAA TTACTGCACCTAGGAGTGGGTTATGCGGCCGATAGTGTCTCCTCGAGGTT GGTCGTTTTCACAGGTGTCAAGCCTTATATGCCGATACCATATATTTAAC TGCCACAAATACTGGCTGAACTTCGTCTCGCAATACAGGCCGACCAGTTC GAGAAGATACACGACTTTGCACGCGCGTACGGCTCTCTCTGCTGGAATCT TAGCAAGGTGCGGTCATGTTCAAATCATGTAGGTCTCGAGCTGGGTAGAA ACGGTCGACCATGGCTACTATGCAGCGTGTCGATGCGTTTTGCCTTGGAT GATGAAACCGTCGCGTCAGCTCGGTAGTTGTTGAGTCCATGTCTACTCAC AGAAGATCACTCAACTGTCGTCTCATCAGGTTATTCCTCGTAAAGATCTT CCCCGGATCTATACCATGTGTCTGCCCGTCAAGGACCGGGGACAGGGTGT TGACCTGACGGGAGATGGCAATAACACGAGTCCGGCACTCTCTAGTGGGC TGCAGGATTTGCAGGTAATCCAAACACATCCCCGTTGACATTTGCCCCTT CGACCGTACCACCTGATGGTTGACAACACGAACAGCACGAGGAATGTCGA ATGACCTTAAAGAGTGAGGAAATATAATCGGTATACAGGGATATTTAGCC TTCAATTTTGAGGTTGCATGTACATGTAGCTAGTGTAACACCCTTGCATT TGGTTGAGCCTTGAACCTCATTTATCCCATTATTTGTTCTCTTGATGTTT TCTTCGTTCGACAGAAAACACGTGATGACGTCAAGGCGGAGGTCATGAAG GCCCCGAAGCGCAGAATCGACAACGTCATCACGCGTCTGACTGACTCAGT TCACCTTCTTCAAGTACACACTCGGGTATGGAATGTGGCCACCTGCGGTC GAATTGTGTTGTTGACCTTCGCAGTACTTGTTGCTCGTAGGTGTTATCTG GTGCCCTCGATGACGCATGTGGAGTGTAGCTGAAGGTTTTTTAGACACTC TAAATCCGTATGATATACATTATGCCCTCCCCACATTTGGTTTTCCAGGA GATGTCAATGACAGTTGGTACTTTTAATGCATGGCATGAGAACGAAATTA ATTTTGTAAGTAACACATTTTCACCTGTCAAATATACGGTCCAGCACACC CGGAGCCATTGCTCAATGGGGTCGTGTTCTGAACAATTGACAGGAAGAGC AATCTAAAAATAGAGCAGGCAAGTTAACGCAACAACGGGAACGTGGGGTA TTTGAACAAATATGAATACCCTCGTTCCCCCCGGTGCGGTTCGTGCGTAA AATGCGCCGGGTCAATGTCACTTTGGGGCGTTTTCTGTCCAGTACAAACA CTTTCGTACACAATCTTTGATTTAAGATTCTGTATGTCATGTGTACAAAC TTTTCCGTATGTGACGGATGAAATACCGTCCCGTGCTGAAATCGTCTCTT GATGGAGCAGGTGCTCGATGAAATGCAAGGCGATATGCGAAGGGCGCGTA TGTGGCGATATGGGACAACGTTGGCTTCATTAAGCGCAGGAATAGGGTTG TCGGGTTGTAGCGTTTTCCTATCTGCGCCCCAAGAGCTAACAGCGGGGGT TGTGGGACTTTCGGTCGTGGGTGCGGGTGGAATACAGGTGGGTTTATTTT GATTGTTCAAATAGTAGAATAGAAATCGAGGAACATTCCCAATATTTTTC ACGGTACCTGTCGTCGACCCTTGCGTGAAGCATTGACCCTGTTCTTCCCT GCACCCATGCAGTTCTTCAACATGAAGGCATTGAAAGCGAAGGAAGAAAA TATGACAAGCATGGAAGGGCTCAACACCCACTTTAGAAGGTAAGAGTTAA GTCATGATACCGATAAGTAGACAGCGTGGGCTGTGGAGGATGAATATAAT GCCATGAATATACTGCTATGTGACCGTTTAGACGCGATATAGACTCATGA CATACTTTTTACTCATACCGTGACCTTTCCAACATATCTTGCATTCAGAG GTTATGCACGTGAACTCGCGGAAGGAGACGAATCTATTACATCAGCATGG ATTCGAGTGAGGGAAGGACTTCATGCGACACTATCTTCTCTCGGGCTGGA CGGTGTGGGGAAAGTCAAGAGTGGCGAACGAAAGGAGCTGAGACGAATAC TCGATGTGGAAATACCGGCCTTGAGACGAAGAGCAGCACCAGTACAATTT TCTTTTTTCGGAACTTCATCGAAAAAATAACGAAAATACCGATCGACATT TCACAGTGAAGAGATGAAAGGGGGGAGAGGAGGAAGAGAGAAAAGAAGTG TAAAACGTATAAAAGGAAGAGAAATGGGAAAGAGAATGGGAAGGAAAGAA CAAACAGATCACTATTATTTTAATGCGCAGAAAAAGCATGTATAAAGGGC TATTAACCCCAAGAGGAAAAAAAGGGGAGAGGGGAAAAAAGGAGAGGAGA AAGCATTTTCCTACATATCCGTTGAAAGTTGAAAGGAAAAAGAATATATA TCTATCCGCTATAAATGGAAAGAACCGTATCCATATTGAAGATAGAAAAG GAACAGAGAAGAAAAATTGTAAAGAGGTATGTACCTACGCCCGAAAGGGT AGAATAGTTCGTGTACTGAGTATGACTGGAAATTTAGTCAAGAACCCTTT TTAATGGGTGGAATCTCCACCCTCCCTACCTAGTCAACTGCTACACCGAC GTAACGCCTACACCGTAGAGAAATAGAAAACTTTGATCCATAGATAAGGA ATATAGACACCTAGTAATATTCCGAGAAGTGGAAGTAATGACAAAGATTT ATAGCTACCCTTCCAGAGGCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2268:9430..14250-

>mRNA_H-paniculata_contig2268.6035.1 ID=mRNA_H-paniculata_contig2268.6035.1|Name=mRNA_H-paniculata_contig2268.6035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3258bp|location=Sequence derived from alignment at H-paniculata_contig2268:9430..14250- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTCTGCACTGCACTTGTGTGCAAGGCGAGTGACCACTTCTTCATC
GCCTATCGCACGGTGGACAATCACCAACGATGTCGTCTGCACTGCACTTG
TGTGCAAGGCGAGTGACCACTTCTTCATCGCCTATCGCACGGTGGACAAT
CACCAACGGTACCCCATCATGGCGACTGACGGCAGCTAAGCCTTGTTGCA
GGGGCTTATCATCGCTGGACGGGAAGGTTCAGGCCGAGATTATGGACCGT
TGCAATGAATTACATGCAAGCTTTATTCAGCCCCTGAACGACAACGTGAA
CGGGCCATTGGAGAAATTGAACACCGGCGGCTACCAATCTACGAAGATGC
CCTTTGTTTTCGTGCTGGGCAACCACAGTTCTGGGAAGTCTAGCTTTATA
AACTACGTGCTGGGAAGAAACATTCAGACCGCAGGAGTTGCGCCAACCGA
TGACAGGTACCCCATCATGGCGACTGACGGCAGCTAAGCCTTGTTGCAGG
GGCTTATCATCGCTGGACGGGAAGGTTCAGGCCGAGATTATGGACCGTTG
CAATGAATTACATGCAAGCTTTATTCAGCCCCTGAACGACAACGTGAACG
GGCCATTGGAGAAATTGAACACCGGCGGCTACCAATCTACGAAGATGCCC
TTTGTTTTCGTGCTGGGCAACCACAGTTCTGGGAAGTCTAGCTTTATAAA
CTACGTGCTGGGAAGAAACATTCAGACCGCAGGAGTTGCGCCAACCGATG
ACAGCTTCACCATCATTGCACCAGGGTCAGCCGATATTGACCAAGATGGA
CCTGCCATTGTCGGGGATCCGGATATGGGGTTTTTGGGGCTGCGACAGTT
CGGCCCAACTCTAGTGCACCACACAGAGCTGAAGCTTCACCATCATTGCA
CCAGGGTCAGCCGATATTGACCAAGATGGACCTGCCATTGTCGGGGATCC
GGATATGGGGTTTTTGGGGCTGCGACAGTTCGGCCCAACTCTAGTGCACC
ACACAGAGCTGAAGATACGATCTGGTACAAGCACGAATTCATTCATGATG
GTGGATAGCCCGGGTATGATCGACAGCCCCGTATCCCGGACGGGTTTTTC
TGCTTACGACAACGGCCCTTCTAGCTCTGGCCGACCAGAGGAAATGGGCC
GTCGGGGTTCAGACTCCACTCGAGGCTATGATTTTGAAGGTGTGGTGAGG
TGGTTCGCCGAGAGAGCGGACGTGATTCTGCTGTTCTTCGATCCGGACAA
GCCAGGCACAACGGGGGAGACTTTGTCCATCTTGACTAACTCCCTACCTG
GCATGGACCATAAGTTGTACATAGTGCTCAACAAGATACGATCTGGTACA
AGCACGAATTCATTCATGATGGTGGATAGCCCGGGTATGATCGACAGCCC
CGTATCCCGGACGGGTTTTTCTGCTTACGACAACGGCCCTTCTAGCTCTG
GCCGACCAGAGGAAATGGGCCGTCGGGGTTCAGACTCCACTCGAGGCTAT
GATTTTGAAGGTGTGGTGAGGTGGTTCGCCGAGAGAGCGGACGTGATTCT
GCTGTTCTTCGATCCGGACAAGCCAGGCACAACGGGGGAGACTTTGTCCA
TCTTGACTAACTCCCTACCTGGCATGGACCATAAGTTGTACATAGTGCTC
AACAAGGCCGACCAGTTCGAGAAGATACACGACTTTGCACGCGCGTACGG
CTCTCTCTGCTGGAATCTTAGCAAGGCCGACCAGTTCGAGAAGATACACG
ACTTTGCACGCGCGTACGGCTCTCTCTGCTGGAATCTTAGCAAGGTTATT
CCTCGTAAAGATCTTCCCCGGATCTATACCATGTGTCTGCCCGTCAAGGA
CCGGGGACAGGGTGTTGACCTGACGGGAGATGGCAATAACACGAGTCCGG
CACTCTCTAGTGGGCTGCAGGATTTGCAGGTTATTCCTCGTAAAGATCTT
CCCCGGATCTATACCATGTGTCTGCCCGTCAAGGACCGGGGACAGGGTGT
TGACCTGACGGGAGATGGCAATAACACGAGTCCGGCACTCTCTAGTGGGC
TGCAGGATTTGCAGAAAACACGTGATGACGTCAAGGCGGAGGTCATGAAG
GCCCCGAAGCGCAGAATCGACAACGTCATCACGCGTCTGACTGACTCAGT
TCACCTTCTTCAAGTACACACTCGGAAAACACGTGATGACGTCAAGGCGG
AGGTCATGAAGGCCCCGAAGCGCAGAATCGACAACGTCATCACGCGTCTG
ACTGACTCAGTTCACCTTCTTCAAGTACACACTCGGGTGCTCGATGAAAT
GCAAGGCGATATGCGAAGGGCGCGTATGTGGCGATATGGGACAACGTTGG
CTTCATTAAGCGCAGGAATAGGGTTGTCGGGTTGTAGCGTTTTCCTATCT
GCGCCCCAAGAGCTAACAGCGGGGGTTGTGGGACTTTCGGTCGTGGGTGC
GGGTGGAATACAGGTGCTCGATGAAATGCAAGGCGATATGCGAAGGGCGC
GTATGTGGCGATATGGGACAACGTTGGCTTCATTAAGCGCAGGAATAGGG
TTGTCGGGTTGTAGCGTTTTCCTATCTGCGCCCCAAGAGCTAACAGCGGG
GGTTGTGGGACTTTCGGTCGTGGGTGCGGGTGGAATACAGTTCTTCAACA
TGAAGGCATTGAAAGCGAAGGAAGAAAATATGACAAGCATGGAAGGGCTC
AACACCCACTTTAGAAGTTCTTCAACATGAAGGCATTGAAAGCGAAGGAA
GAAAATATGACAAGCATGGAAGGGCTCAACACCCACTTTAGAAGAGGTTA
TGCACGTGAACTCGCGGAAGGAGACGAATCTATTACATCAGCATGGATTC
GAGTGAGGGAAGGACTTCATGCGACACTATCTTCTCTCGGGCTGGACGGT
GTGGGGAAAGTCAAGAGTGGCGAACGAAAGGAGCTGAGACGAATACTCGA
TGTGGAAATACCGGCCTTGAGACGAAGAGCAGCACCAGTACAATTTTCTT
TTTTCGGAACTTCATCGAAAAAATAAAGGTTATGCACGTGAACTCGCGGA
AGGAGACGAATCTATTACATCAGCATGGATTCGAGTGAGGGAAGGACTTC
ATGCGACACTATCTTCTCTCGGGCTGGACGGTGTGGGGAAAGTCAAGAGT
GGCGAACGAAAGGAGCTGAGACGAATACTCGATGTGGAAATACCGGCCTT
GAGACGAAGAGCAGCACCAGTACAATTTTCTTTTTTCGGAACTTCATCGA
AAAAATAA
back to top