mRNA_H-paniculata_contig22585.6014.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22585.6014.1
Unique NamemRNA_H-paniculata_contig22585.6014.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig22585.6014.1 vs. uniprot
Match: A0A6H5JSC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.240e-8
Identity = 31/54 (57.41%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 VAYYGLLQLFLTRRAVYLLVWDASQEGSRETATGGTMGELETLGILPWLRAFSF 162
            V YYGLLQLFLT RAVY+LVWDA++    E         LE LGI PWLR  +F
Sbjct:  146 VVYYGLLQLFLTPRAVYMLVWDAAKASEMEGLN------LEDLGIAPWLRYLTF 193
[Close]
BLAST of mRNA_H-paniculata_contig22585.6014.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 4.360e-8
Identity = 31/54 (57.41%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 VAYYGLLQLFLTRRAVYLLVWDASQEGSRETATGGTMGELETLGILPWLRAFSF 162
            V YYGLLQLFLT RAVYLLVWDA++    E         LE L I PWLR  +F
Sbjct:  436 VVYYGLLQLFLTPRAVYLLVWDAAKASEMEGLN------LEDLAIAPWLRHLTF 483
[Close]
BLAST of mRNA_H-paniculata_contig22585.6014.1 vs. uniprot
Match: A0A6H5JQZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ5_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.900e-8
Identity = 30/53 (56.60%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    4 AYYGLLQLFLTRRAVYLLVWDASQEGSRETATGGTMGELETLGILPWLRAFSF 162
            AYYGLLQLFLT RAVYLLVWDA +    +         LE L I PWLR  +F
Sbjct:  298 AYYGLLQLFLTPRAVYLLVWDAEKASQMDELN------LEDLAIAPWLRQMTF 344
[Close]
BLAST of mRNA_H-paniculata_contig22585.6014.1 vs. uniprot
Match: A0A6H5JRW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW5_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.950e-8
Identity = 30/53 (56.60%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    4 AYYGLLQLFLTRRAVYLLVWDASQEGSRETATGGTMGELETLGILPWLRAFSF 162
            AYYGLLQLFLT RAVYLLVWDA +    +         LE L I PWLR  +F
Sbjct:  136 AYYGLLQLFLTPRAVYLLVWDAEKASQMDELN------LEDLAIAPWLRQMTF 182
[Close]
BLAST of mRNA_H-paniculata_contig22585.6014.1 vs. uniprot
Match: A0A6H5KM38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM38_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.060e-7
Identity = 29/54 (53.70%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 VAYYGLLQLFLTRRAVYLLVWDASQEGSRETATGGTMGELETLGILPWLRAFSF 162
            + YYGLLQLFLT RAVYLLVWDA++    +         LE L I PWLR  +F
Sbjct:   68 IVYYGLLQLFLTPRAVYLLVWDAAKASEMDGLN------LEDLAIAPWLRYLTF 115
[Close]
BLAST of mRNA_H-paniculata_contig22585.6014.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.120e-7
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 VAYYGLLQLFLTRRAVYLLVWDASQEGSRETATGGTMGELETLGILPWLRAFSF 162
            V YYGLLQLFLT RAVYLLVWDA++    +         LE L I PWLR  +F
Sbjct:  508 VVYYGLLQLFLTPRAVYLLVWDAAKASEMDGLN------LEDLAIAPWLRYLTF 555
[Close]
BLAST of mRNA_H-paniculata_contig22585.6014.1 vs. uniprot
Match: D7FX69_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.120e-7
Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 VAYYGLLQLFLTRRAVYLLVWDASQEGSRETATGGTMGELETLGILPWLRAFSF 162
            V YYGLLQLFLT RAVYLLVWDA++    +         LE L I PWLR  +F
Sbjct:  601 VVYYGLLQLFLTPRAVYLLVWDAAKASEMDGLN------LEDLAIAPWLRYLTF 648
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22585.6014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JSC0_9PHAE1.240e-857.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJV1_ECTSI4.360e-857.41LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JQZ5_9PHAE5.900e-856.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRW5_9PHAE5.950e-856.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM38_9PHAE1.060e-753.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX56_ECTSI1.120e-755.56LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FX69_ECTSI1.120e-755.56LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22585contigH-paniculata_contig22585:2874..3037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size166
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929627.6217406-CDS-H-paniculata_contig22585:2873..30351622929627.6217406-CDS-H-paniculata_contig22585:2873..3035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22585 2874..3035 +
1691480941.8414147-CDS-H-paniculata_contig22585:2873..30351691480941.8414147-CDS-H-paniculata_contig22585:2873..3035Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22585 2874..3035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22585.6014.1prot_H-paniculata_contig22585.6014.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22585 2874..3035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22585.6014.1

>prot_H-paniculata_contig22585.6014.1 ID=prot_H-paniculata_contig22585.6014.1|Name=mRNA_H-paniculata_contig22585.6014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
VAYYGLLQLFLTRRAVYLLVWDASQEGSRETATGGTMGELETLGILPWLR
AFSF
back to top

mRNA from alignment at H-paniculata_contig22585:2874..3037+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22585.6014.1 ID=mRNA_H-paniculata_contig22585.6014.1|Name=mRNA_H-paniculata_contig22585.6014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=164bp|location=Sequence derived from alignment at H-paniculata_contig22585:2874..3037+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCCTACTATGGCCTCCTTCAGCTATTTTTAACGCGCCGAGCGGTGTA
TCTCCTGGTGTGGGACGCGAGTCAGGAAGGAAGCAGGGAAACAGCCACGG
GTGGGACCATGGGCGAGCTTGAGACACTGGGTATCCTCCCGTGGCTGCGA
GCGTTTTCTTTCCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig22585:2874..3037+

>mRNA_H-paniculata_contig22585.6014.1 ID=mRNA_H-paniculata_contig22585.6014.1|Name=mRNA_H-paniculata_contig22585.6014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig22585:2874..3037+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCCTACTATGGCCTCCTTCAGCTATTTTTAACGCGCCGAGCGGTGTA
TCTCCTGGTGTGGGACGCGAGTCAGGAAGGAAGCAGGGAAACAGCCACGG
GTGGGACCATGGGCGAGCTTGAGACACTGGGTATCCTCCCGTGGCTGCGA
GCGTTTTCTTTCGTTGCCTACTATGGCCTCCTTCAGCTATTTTTAACGCG
CCGAGCGGTGTATCTCCTGGTGTGGGACGCGAGTCAGGAAGGAAGCAGGG
AAACAGCCACGGGTGGGACCATGGGCGAGCTTGAGACACTGGGTATCCTC
CCGTGGCTGCGAGCGTTTTCTTTC
back to top