mRNA_H-paniculata_contig2253.5997.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 109 bits (272), Expect = 4.440e-25 Identity = 59/131 (45.04%), Postives = 74/131 (56.49%), Query Frame = 1
Query: 4 FKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKD-LRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKDVY 393
K R++ GW +H IDCG T+ PV R SQL IAA G+ V +D AFL ++EEVY RQ EI D + G P MKL KS YGL+QSP+ ++ IGF A +SDP VYV G+ Y
Sbjct: 951 MKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTY 1081
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE) HSP 1 Score: 101 bits (252), Expect = 5.950e-24 Identity = 57/131 (43.51%), Postives = 72/131 (54.96%), Query Frame = 1
Query: 4 FKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKD-LRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKDVY 393
K R+ GW ++ ID G T+ PV R SQL IAA G+ V +D AFL ++EEVY RQ EI D + G P MKL KS YGL+QSP+ ++ IGF A +SDP VYV G+ Y
Sbjct: 55 MKARLTVQGWGQRYGIDYGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTY 185
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 1.300e-21 Identity = 54/120 (45.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query: 4 FKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKD-LRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDP 360
K R++ GW +H IDCG T+ PV R SQL IAA G+ V +D AFL K++EEVY RQ EI D + G P MKL KS YGL+QSP+ ++ IG A +SDP
Sbjct: 387 MKARLIVQGWGQRHGIDCGGTYGPVSRFSSQLVFMAIAAERGYDVETMDVVTAFLQSKVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGSTALLSDP 506
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: UPI001CC1BEB7 (DDE-type integrase/transposase/recombinase n=1 Tax=Corallococcus sp. AS-1-6 TaxID=2874599 RepID=UPI001CC1BEB7) HSP 1 Score: 93.2 bits (230), Expect = 2.030e-19 Identity = 56/126 (44.44%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKG 378
R+K R+V TG+S K+ ID TF+PV R ES IAA G S+ +D + AFLNGKLDEE+Y +Q K + + KL KS YGL+Q+P ++ ID L GF +D VYVKG
Sbjct: 973 RYKARLVCTGYSQKYGIDYEETFSPVVRPESIRLLVAIAAQLGGSIHQMDVTTAFLNGKLDEEIYVKQPMGYVQKGFEDKVY--KLKKSLYGLKQAPLCWNKEIDGVLTKFGFTRNKADHGVYVKG 1096
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A8J6CVB0_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CVB0_9ROSI) HSP 1 Score: 87.8 bits (216), Expect = 1.450e-17 Identity = 46/129 (35.66%), Postives = 75/129 (58.14%), Query Frame = 1
Query: 1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKD 387
+ K R+V G+S ++ +D TF PV R ++ +AA W + +D AFLNG L EE+Y Q ++K + + +K K+ YGL+Q+P+A + +D L +GF ++S+P++YVK SKD
Sbjct: 195 KHKARLVVKGYSQQYGVDFEVTFAPVARLDTIKLLFALAAQKKWQIHQLDVKSAFLNGFLKEEIYIEQPDGFQVKGQEDKVYRLK--KALYGLKQAPRAWYDRVDASLSKLGFEKSLSEPTLYVKKSKD 321
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A438HQP6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HQP6_VITVI) HSP 1 Score: 87.0 bits (214), Expect = 2.870e-17 Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 1
Query: 1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKD 387
R K R+VA G+S + +D TF PV R ++ +AA GW + +D AFLNGKL+EE+Y Q + + + KL K+ YGL+Q+P+A + ID GF+ + S+P++YVK SKD
Sbjct: 762 RLKARLVAKGYSQQPNVDFHETFAPVARLDTIRTIITVAAQKGWLLYQLDIKSAFLNGKLEEEIYVEQPQGFVVDGEENKVY--KLKKALYGLKQAPRAWYTQIDSYFIENGFIRSKSEPTLYVK-SKD 887
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A438FVW7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FVW7_VITVI) HSP 1 Score: 87.0 bits (214), Expect = 2.870e-17 Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 1
Query: 1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKD 387
R K R+VA G+S + +D TF PV R ++ +AA GW + +D AFLNGKL+EE+Y Q + + + KL K+ YGL+Q+P+A + ID GF+ + S+P++YVK SKD
Sbjct: 650 RLKARLVAKGYSQQPGVDFHETFAPVARLDTIRTIIAVAAQKGWLLYQLDIKSAFLNGKLEEEIYVEQPQGFVVDGEENKVY--KLKKALYGLKQAPRAWYTQIDSYFIENGFIRSKSEPTLYVK-SKD 775
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A2G8SFR3_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SFR3_9APHY) HSP 1 Score: 87.0 bits (214), Expect = 2.910e-17 Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 1
Query: 1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVK 375
++K R+VA G++ H +D TF PV R S IA+ +GW + DFS AFLN LDE+VY Q P E D RG+ F +KL K+ YGL+Q + + T+ L ++GF +D ++ K
Sbjct: 1074 KYKARLVARGFTQVHGVDYTETFAPVARLSSIRTIFAIASRNGWPIDVFDFSSAFLNSTLDEDVYLEQPPHHEFAD-RGK-FVLKLKKALYGLKQGGRKWYETLCAALADLGFGRVEADHGIFFK 1196
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A438H4J7_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H4J7_VITVI) HSP 1 Score: 86.7 bits (213), Expect = 3.870e-17 Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 1
Query: 1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKD 387
R K R+VA G+S + +D TF PV R ++ +AA GW + +D AFLNGKL+EE+Y Q + + + KL K+ YGL+Q+P+A + ID GF+ + S+P++YVK SKD
Sbjct: 613 RLKARLVAKGYSQQPGVDFHETFAPVARLDTIRTIIAVAAQKGWLLYQLDIKSAFLNGKLEEEIYVEQPQGFVVDGEENKVY--KLKKALYGLKQAPRAWYTQIDNYFIENGFIRSKSEPTLYVK-SKD 738
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA) HSP 1 Score: 86.7 bits (213), Expect = 3.940e-17 Identity = 49/129 (37.98%), Postives = 74/129 (57.36%), Query Frame = 1
Query: 1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKD 387
R+K R+VA G++ H ID TF PV + S +AA+ W + +D AFLNGKL+EEVY + P E ++ +L KS YGL+QSP+A ++ +G+V + +D +++VK SKD
Sbjct: 911 RYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFLNGKLEEEVYMKLPPGFEGEN---NDVVCRLNKSLYGLKQSPRAWFTRFSTTMKQLGYVQSQADHTLFVKKSKD 1036 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2253.5997.1 >prot_H-paniculata_contig2253.5997.1 ID=prot_H-paniculata_contig2253.5997.1|Name=mRNA_H-paniculata_contig2253.5997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDback to top mRNA from alignment at H-paniculata_contig2253:16317..16721+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2253.5997.1 ID=mRNA_H-paniculata_contig2253.5997.1|Name=mRNA_H-paniculata_contig2253.5997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at H-paniculata_contig2253:16317..16721+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2253:16317..16721+ >mRNA_H-paniculata_contig2253.5997.1 ID=mRNA_H-paniculata_contig2253.5997.1|Name=mRNA_H-paniculata_contig2253.5997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig2253:16317..16721+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |